{"id":"https://openalex.org/W2150343616","doi":"https://doi.org/10.1093/bioinformatics/btm602","title":"Automated programming for bioinformatics algorithm deployment","display_name":"Automated programming for bioinformatics algorithm deployment","publication_year":2008,"publication_date":"2008-01-03","ids":{"openalex":"https://openalex.org/W2150343616","doi":"https://doi.org/10.1093/bioinformatics/btm602","mag":"2150343616","pmid":"https://pubmed.ncbi.nlm.nih.gov/18174185"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btm602","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm602","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103190902","display_name":"Gil Alterovitz","orcid":"https://orcid.org/0000-0002-5952-9844"},"institutions":[{"id":"https://openalex.org/I1332596392","display_name":"Shriners Hospitals for Children - Erie","ror":"https://ror.org/02gffk937","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1332596392","https://openalex.org/I4210144267"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Gil Alterovitz","raw_affiliation_strings":["1 Children's Hospital Informatics Program at the Division of Health Sciences and Technology, Harvard University and Massachusetts Institute of Technology, 2Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology and 3Harvard Partners Center for Genetics and Genomics, Harvard Medical School, Boston, USA"],"affiliations":[{"raw_affiliation_string":"1 Children's Hospital Informatics Program at the Division of Health Sciences and Technology, Harvard University and Massachusetts Institute of Technology, 2Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology and 3Harvard Partners Center for Genetics and Genomics, Harvard Medical School, Boston, USA","institution_ids":["https://openalex.org/I1332596392"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051666416","display_name":"Adnaan Jiwaji","orcid":null},"institutions":[{"id":"https://openalex.org/I1332596392","display_name":"Shriners Hospitals for Children - Erie","ror":"https://ror.org/02gffk937","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1332596392","https://openalex.org/I4210144267"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adnaan Jiwaji","raw_affiliation_strings":["1 Children's Hospital Informatics Program at the Division of Health Sciences and Technology, Harvard University and Massachusetts Institute of Technology, 2Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology and 3Harvard Partners Center for Genetics and Genomics, Harvard Medical School, Boston, USA"],"affiliations":[{"raw_affiliation_string":"1 Children's Hospital Informatics Program at the Division of Health Sciences and Technology, Harvard University and Massachusetts Institute of Technology, 2Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology and 3Harvard Partners Center for Genetics and Genomics, Harvard Medical School, Boston, USA","institution_ids":["https://openalex.org/I1332596392"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054056109","display_name":"Marco Ramoni","orcid":null},"institutions":[{"id":"https://openalex.org/I1332596392","display_name":"Shriners Hospitals for Children - Erie","ror":"https://ror.org/02gffk937","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1332596392","https://openalex.org/I4210144267"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marco F. Ramoni","raw_affiliation_strings":["1 Children's Hospital Informatics Program at the Division of Health Sciences and Technology, Harvard University and Massachusetts Institute of Technology, 2Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology and 3Harvard Partners Center for Genetics and Genomics, Harvard Medical School, Boston, USA"],"affiliations":[{"raw_affiliation_string":"1 Children's Hospital Informatics Program at the Division of Health Sciences and Technology, Harvard University and Massachusetts Institute of Technology, 2Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology and 3Harvard Partners Center for Genetics and Genomics, Harvard Medical School, Boston, USA","institution_ids":["https://openalex.org/I1332596392"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5103190902"],"corresponding_institution_ids":["https://openalex.org/I1332596392"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.0691,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.9087227,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":null,"biblio":{"volume":"24","issue":"3","first_page":"450","last_page":"451"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9825000166893005,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.822536051273346},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.7066367864608765},{"id":"https://openalex.org/keywords/wizard","display_name":"Wizard","score":0.6853130459785461},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.6483928561210632},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.6363325715065002},{"id":"https://openalex.org/keywords/usable","display_name":"USable","score":0.5977688431739807},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5702670812606812},{"id":"https://openalex.org/keywords/application-programming-interface","display_name":"Application programming interface","score":0.5511316657066345},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.4937957227230072},{"id":"https://openalex.org/keywords/software-deployment","display_name":"Software deployment","score":0.4904648959636688},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.456533282995224},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.43850457668304443},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.4241962730884552},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4042683243751526},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.24453914165496826},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.21396362781524658}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.822536051273346},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.7066367864608765},{"id":"https://openalex.org/C2776784076","wikidata":"https://www.wikidata.org/wiki/Q580334","display_name":"Wizard","level":2,"score":0.6853130459785461},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.6483928561210632},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.6363325715065002},{"id":"https://openalex.org/C2780615836","wikidata":"https://www.wikidata.org/wiki/Q2471869","display_name":"USable","level":2,"score":0.5977688431739807},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5702670812606812},{"id":"https://openalex.org/C99613125","wikidata":"https://www.wikidata.org/wiki/Q165194","display_name":"Application programming interface","level":2,"score":0.5511316657066345},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.4937957227230072},{"id":"https://openalex.org/C105339364","wikidata":"https://www.wikidata.org/wiki/Q2297740","display_name":"Software deployment","level":2,"score":0.4904648959636688},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.456533282995224},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.43850457668304443},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.4241962730884552},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4042683243751526},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.24453914165496826},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.21396362781524658},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btm602","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm602","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18174185","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18174185","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":3,"referenced_works":["https://openalex.org/W2035547462","https://openalex.org/W2145904912","https://openalex.org/W2153657280"],"related_works":["https://openalex.org/W2077082352","https://openalex.org/W1550042627","https://openalex.org/W2168715864","https://openalex.org/W2364022518","https://openalex.org/W2150343616","https://openalex.org/W2127877131","https://openalex.org/W83892589","https://openalex.org/W2078627343","https://openalex.org/W1992987618","https://openalex.org/W2039349979"],"abstract_inverted_index":{"The":[0],"open":[1],"source":[2],"code":[3],"can":[4],"be":[5],"downloaded":[6],"from:":[7],"http://bcl.med.harvard.edu/proteomics/proj/APBA/.":[8]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
