{"id":"https://openalex.org/W2151224868","doi":"https://doi.org/10.1093/bioinformatics/btm458","title":"IGG: A tool to integrate GeneChips for genetic studies","display_name":"IGG: A tool to integrate GeneChips for genetic studies","publication_year":2007,"publication_date":"2007-09-14","ids":{"openalex":"https://openalex.org/W2151224868","doi":"https://doi.org/10.1093/bioinformatics/btm458","mag":"2151224868","pmid":"https://pubmed.ncbi.nlm.nih.gov/17872914"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btm458","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm458","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/22/3105/49857601/bioinformatics_23_22_3105.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/23/22/3105/49857601/bioinformatics_23_22_3105.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040633212","display_name":"Miaoxin Li","orcid":"https://orcid.org/0000-0002-4733-0109"},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":true,"raw_author_name":"M.-X. Li","raw_affiliation_strings":["1 Department of Biochemistry, 2Department of Psychiatry, 3Department of Medicine, 4The Centre for Reproduction, Development and Growth, 5Genome Research Center, The University of Hong Kong, Pokfulam, Hong Kong and 6Hunan Business College, Changsha, Hunan 410205, China"],"affiliations":[{"raw_affiliation_string":"1 Department of Biochemistry, 2Department of Psychiatry, 3Department of Medicine, 4The Centre for Reproduction, Development and Growth, 5Genome Research Center, The University of Hong Kong, Pokfulam, Hong Kong and 6Hunan Business College, Changsha, Hunan 410205, China","institution_ids":["https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044609483","display_name":"Lei Jiang","orcid":"https://orcid.org/0000-0002-3505-4020"},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"L. Jiang","raw_affiliation_strings":["1 Department of Biochemistry, 2Department of Psychiatry, 3Department of Medicine, 4The Centre for Reproduction, Development and Growth, 5Genome Research Center, The University of Hong Kong, Pokfulam, Hong Kong and 6Hunan Business College, Changsha, Hunan 410205, China"],"affiliations":[{"raw_affiliation_string":"1 Department of Biochemistry, 2Department of Psychiatry, 3Department of Medicine, 4The Centre for Reproduction, Development and Growth, 5Genome Research Center, The University of Hong Kong, Pokfulam, Hong Kong and 6Hunan Business College, Changsha, Hunan 410205, China","institution_ids":["https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085912683","display_name":"SL Ho","orcid":null},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"S.-L. Ho","raw_affiliation_strings":["1 Department of Biochemistry, 2Department of Psychiatry, 3Department of Medicine, 4The Centre for Reproduction, Development and Growth, 5Genome Research Center, The University of Hong Kong, Pokfulam, Hong Kong and 6Hunan Business College, Changsha, Hunan 410205, China"],"affiliations":[{"raw_affiliation_string":"1 Department of Biochemistry, 2Department of Psychiatry, 3Department of Medicine, 4The Centre for Reproduction, Development and Growth, 5Genome Research Center, The University of Hong Kong, Pokfulam, Hong Kong and 6Hunan Business College, Changsha, Hunan 410205, China","institution_ids":["https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087582431","display_name":"You\u2010Qiang Song","orcid":"https://orcid.org/0000-0001-9407-2256"},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Y.-Q. Song","raw_affiliation_strings":["1 Department of Biochemistry, 2Department of Psychiatry, 3Department of Medicine, 4The Centre for Reproduction, Development and Growth, 5Genome Research Center, The University of Hong Kong, Pokfulam, Hong Kong and 6Hunan Business College, Changsha, Hunan 410205, China"],"affiliations":[{"raw_affiliation_string":"1 Department of Biochemistry, 2Department of Psychiatry, 3Department of Medicine, 4The Centre for Reproduction, Development and Growth, 5Genome Research Center, The University of Hong Kong, Pokfulam, Hong Kong and 6Hunan Business College, Changsha, Hunan 410205, China","institution_ids":["https://openalex.org/I889458895"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018516395","display_name":"Pak C. Sham","orcid":"https://orcid.org/0000-0002-2533-7270"},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"P.-C. Sham","raw_affiliation_strings":["1 Department of Biochemistry, 2Department of Psychiatry, 3Department of Medicine, 4The Centre for Reproduction, Development and Growth, 5Genome Research Center, The University of Hong Kong, Pokfulam, Hong Kong and 6Hunan Business College, Changsha, Hunan 410205, China"],"affiliations":[{"raw_affiliation_string":"1 Department of Biochemistry, 2Department of Psychiatry, 3Department of Medicine, 4The Centre for Reproduction, Development and Growth, 5Genome Research Center, The University of Hong Kong, Pokfulam, Hong Kong and 6Hunan Business College, Changsha, Hunan 410205, China","institution_ids":["https://openalex.org/I889458895"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5040633212"],"corresponding_institution_ids":["https://openalex.org/I889458895"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.7853,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.71259161,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"23","issue":"22","first_page":"3105","last_page":"3107"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9919999837875366,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/international-hapmap-project","display_name":"International HapMap Project","score":0.8874639272689819},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6823005080223083},{"id":"https://openalex.org/keywords/genotyping","display_name":"Genotyping","score":0.522377073764801},{"id":"https://openalex.org/keywords/linkage","display_name":"Linkage (software)","score":0.46352702379226685},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.4170266389846802},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3620772957801819},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15899154543876648},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14247381687164307},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09313550591468811}],"concepts":[{"id":"https://openalex.org/C177580304","wikidata":"https://www.wikidata.org/wiki/Q1147298","display_name":"International HapMap Project","level":5,"score":0.8874639272689819},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6823005080223083},{"id":"https://openalex.org/C31467283","wikidata":"https://www.wikidata.org/wiki/Q912147","display_name":"Genotyping","level":4,"score":0.522377073764801},{"id":"https://openalex.org/C31266012","wikidata":"https://www.wikidata.org/wiki/Q6554340","display_name":"Linkage (software)","level":3,"score":0.46352702379226685},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.4170266389846802},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3620772957801819},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15899154543876648},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14247381687164307},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09313550591468811}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btm458","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm458","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/22/3105/49857601/bioinformatics_23_22_3105.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17872914","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17872914","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:hub.hku.hk:10722/68111","is_oa":false,"landing_page_url":"http://hdl.handle.net/10722/68111","pdf_url":null,"source":{"id":"https://openalex.org/S4377196271","display_name":"The HKU Scholars Hub (University of Hong Kong)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I889458895","host_organization_name":"University of Hong Kong","host_organization_lineage":["https://openalex.org/I889458895"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btm458","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm458","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/22/3105/49857601/bioinformatics_23_22_3105.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5299999713897705,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"},{"score":0.4000000059604645,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2151224868.pdf","grobid_xml":"https://content.openalex.org/works/W2151224868.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W2002688528","https://openalex.org/W2009733794","https://openalex.org/W2025143098","https://openalex.org/W2055300468","https://openalex.org/W2105306382","https://openalex.org/W2119258997","https://openalex.org/W2122031852","https://openalex.org/W2149791927","https://openalex.org/W2150722176","https://openalex.org/W2153025946","https://openalex.org/W2217809488"],"related_works":["https://openalex.org/W2006966623","https://openalex.org/W2030089114","https://openalex.org/W2023828027","https://openalex.org/W3140018814","https://openalex.org/W2060628437","https://openalex.org/W2061684375","https://openalex.org/W2377518790","https://openalex.org/W2394359576","https://openalex.org/W2463477745","https://openalex.org/W2349105149"],"abstract_inverted_index":{"To":[0],"facilitate":[1],"genetic":[2,59],"studies":[3],"using":[4],"high-throughput":[5],"genotyping":[6],"technologies,":[7],"we":[8],"have":[9],"developed":[10],"an":[11],"open":[12],"source":[13],"tool":[14,72],"to":[15,94],"integrate":[16,28],"genotype":[17,68],"data":[18,33,53],"across":[19],"the":[20,40,51,65],"Affymetrix":[21],"and":[22,49,62,83,110],"Illumina":[23],"platforms.":[24],"It":[25],"can":[26],"efficiently":[27],"a":[29,44,95,100],"large":[30],"amount":[31],"of":[32,39,57,67,86,108],"from":[34],"various":[35],"GeneChips,":[36],"add":[37],"genotypes":[38],"HapMap":[41,111],"Project":[42],"into":[43],"specific":[45],"project,":[46],"flexibly":[47],"trim":[48],"export":[50],"integrated":[52],"with":[54],"different":[55],"formats":[56],"popular":[58],"analysis":[60],"tools,":[61],"highly":[63],"control":[64],"quality":[66],"data.":[69],"Furthermore,":[70],"this":[71],"has":[73,90],"sufficiently":[74],"simplified":[75],"its":[76,79],"usage":[77],"through":[78],"user-friendly":[80],"graphic":[81],"interface":[82],"is":[84],"independent":[85],"third-party":[87],"databases.":[88],"IGG":[89],"successfully":[91],"been":[92],"applied":[93],"genome-wide":[96],"linkage":[97],"scan":[98],"in":[99],"Charcot-Marie-Tooth":[101],"disease":[102],"pedigree":[103],"by":[104],"integrating":[105],"three":[106],"types":[107],"GeneChips":[109],"project":[112],"genotypes.":[113]},"counts_by_year":[{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
