{"id":"https://openalex.org/W2107603310","doi":"https://doi.org/10.1093/bioinformatics/btm333","title":"Eu.Gene Analyzer a tool for integrating gene expression data with pathway databases","display_name":"Eu.Gene Analyzer a tool for integrating gene expression data with pathway databases","publication_year":2007,"publication_date":"2007-06-28","ids":{"openalex":"https://openalex.org/W2107603310","doi":"https://doi.org/10.1093/bioinformatics/btm333","mag":"2107603310","pmid":"https://pubmed.ncbi.nlm.nih.gov/17599938"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btm333","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm333","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/19/2631/16861227/btm333.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/23/19/2631/16861227/btm333.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056119983","display_name":"Duccio Cavalieri","orcid":"https://orcid.org/0000-0001-6426-5719"},"institutions":[{"id":"https://openalex.org/I45084792","display_name":"University of Florence","ror":"https://ror.org/04jr1s763","country_code":"IT","type":"education","lineage":["https://openalex.org/I45084792"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Duccio Cavalieri","raw_affiliation_strings":["1 Department of Preclinical and Clinical Pharmacology, 2Department of Statistics, University of Florence, Florence, Italy, 3BIGCAT Bioinformatics, University of Maastricht, Maastricht, The Netherlands and 4Inspect.it, Capolona (Arezzo), Italy"],"affiliations":[{"raw_affiliation_string":"1 Department of Preclinical and Clinical Pharmacology, 2Department of Statistics, University of Florence, Florence, Italy, 3BIGCAT Bioinformatics, University of Maastricht, Maastricht, The Netherlands and 4Inspect.it, Capolona (Arezzo), Italy","institution_ids":["https://openalex.org/I45084792"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062143166","display_name":"Cinzia Castagnini","orcid":null},"institutions":[{"id":"https://openalex.org/I45084792","display_name":"University of Florence","ror":"https://ror.org/04jr1s763","country_code":"IT","type":"education","lineage":["https://openalex.org/I45084792"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Cinzia Castagnini","raw_affiliation_strings":["1 Department of Preclinical and Clinical Pharmacology, 2Department of Statistics, University of Florence, Florence, Italy, 3BIGCAT Bioinformatics, University of Maastricht, Maastricht, The Netherlands and 4Inspect.it, Capolona (Arezzo), Italy"],"affiliations":[{"raw_affiliation_string":"1 Department of Preclinical and Clinical Pharmacology, 2Department of Statistics, University of Florence, Florence, Italy, 3BIGCAT Bioinformatics, University of Maastricht, Maastricht, The Netherlands and 4Inspect.it, Capolona (Arezzo), Italy","institution_ids":["https://openalex.org/I45084792"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037952121","display_name":"Simona Toti","orcid":null},"institutions":[{"id":"https://openalex.org/I45084792","display_name":"University of Florence","ror":"https://ror.org/04jr1s763","country_code":"IT","type":"education","lineage":["https://openalex.org/I45084792"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Simona Toti","raw_affiliation_strings":["1 Department of Preclinical and Clinical Pharmacology, 2Department of Statistics, University of Florence, Florence, Italy, 3BIGCAT Bioinformatics, University of Maastricht, Maastricht, The Netherlands and 4Inspect.it, Capolona (Arezzo), Italy"],"affiliations":[{"raw_affiliation_string":"1 Department of Preclinical and Clinical Pharmacology, 2Department of Statistics, University of Florence, Florence, Italy, 3BIGCAT Bioinformatics, University of Maastricht, Maastricht, The Netherlands and 4Inspect.it, Capolona (Arezzo), Italy","institution_ids":["https://openalex.org/I45084792"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061741533","display_name":"Karolina Maciag","orcid":"https://orcid.org/0000-0003-0803-4312"},"institutions":[{"id":"https://openalex.org/I45084792","display_name":"University of Florence","ror":"https://ror.org/04jr1s763","country_code":"IT","type":"education","lineage":["https://openalex.org/I45084792"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Karolina Maciag","raw_affiliation_strings":["1 Department of Preclinical and Clinical Pharmacology, 2Department of Statistics, University of Florence, Florence, Italy, 3BIGCAT Bioinformatics, University of Maastricht, Maastricht, The Netherlands and 4Inspect.it, Capolona (Arezzo), Italy"],"affiliations":[{"raw_affiliation_string":"1 Department of Preclinical and Clinical Pharmacology, 2Department of Statistics, University of Florence, Florence, Italy, 3BIGCAT Bioinformatics, University of Maastricht, Maastricht, The Netherlands and 4Inspect.it, Capolona (Arezzo), Italy","institution_ids":["https://openalex.org/I45084792"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036590063","display_name":"Thomas Kelder","orcid":"https://orcid.org/0000-0002-5311-2247"},"institutions":[{"id":"https://openalex.org/I45084792","display_name":"University of Florence","ror":"https://ror.org/04jr1s763","country_code":"IT","type":"education","lineage":["https://openalex.org/I45084792"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Thomas Kelder","raw_affiliation_strings":["1 Department of Preclinical and Clinical Pharmacology, 2Department of Statistics, University of Florence, Florence, Italy, 3BIGCAT Bioinformatics, University of Maastricht, Maastricht, The Netherlands and 4Inspect.it, Capolona (Arezzo), Italy"],"affiliations":[{"raw_affiliation_string":"1 Department of Preclinical and Clinical Pharmacology, 2Department of Statistics, University of Florence, Florence, Italy, 3BIGCAT Bioinformatics, University of Maastricht, Maastricht, The Netherlands and 4Inspect.it, Capolona (Arezzo), Italy","institution_ids":["https://openalex.org/I45084792"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054053553","display_name":"Luca Gambineri","orcid":null},"institutions":[{"id":"https://openalex.org/I45084792","display_name":"University of Florence","ror":"https://ror.org/04jr1s763","country_code":"IT","type":"education","lineage":["https://openalex.org/I45084792"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Luca Gambineri","raw_affiliation_strings":["1 Department of Preclinical and Clinical Pharmacology, 2Department of Statistics, University of Florence, Florence, Italy, 3BIGCAT Bioinformatics, University of Maastricht, Maastricht, The Netherlands and 4Inspect.it, Capolona (Arezzo), Italy"],"affiliations":[{"raw_affiliation_string":"1 Department of Preclinical and Clinical Pharmacology, 2Department of Statistics, University of Florence, Florence, Italy, 3BIGCAT Bioinformatics, University of Maastricht, Maastricht, The Netherlands and 4Inspect.it, Capolona (Arezzo), Italy","institution_ids":["https://openalex.org/I45084792"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004939408","display_name":"Samuele Angioli","orcid":null},"institutions":[{"id":"https://openalex.org/I45084792","display_name":"University of Florence","ror":"https://ror.org/04jr1s763","country_code":"IT","type":"education","lineage":["https://openalex.org/I45084792"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Samuele Angioli","raw_affiliation_strings":["1 Department of Preclinical and Clinical Pharmacology, 2Department of Statistics, University of Florence, Florence, Italy, 3BIGCAT Bioinformatics, University of Maastricht, Maastricht, The Netherlands and 4Inspect.it, Capolona (Arezzo), Italy"],"affiliations":[{"raw_affiliation_string":"1 Department of Preclinical and Clinical Pharmacology, 2Department of Statistics, University of Florence, Florence, Italy, 3BIGCAT Bioinformatics, University of Maastricht, Maastricht, The Netherlands and 4Inspect.it, Capolona (Arezzo), Italy","institution_ids":["https://openalex.org/I45084792"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5108124876","display_name":"Piero Dolara","orcid":null},"institutions":[{"id":"https://openalex.org/I45084792","display_name":"University of Florence","ror":"https://ror.org/04jr1s763","country_code":"IT","type":"education","lineage":["https://openalex.org/I45084792"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Piero Dolara","raw_affiliation_strings":["1 Department of Preclinical and Clinical Pharmacology, 2Department of Statistics, University of Florence, Florence, Italy, 3BIGCAT Bioinformatics, University of Maastricht, Maastricht, The Netherlands and 4Inspect.it, Capolona (Arezzo), Italy"],"affiliations":[{"raw_affiliation_string":"1 Department of Preclinical and Clinical Pharmacology, 2Department of Statistics, University of Florence, Florence, Italy, 3BIGCAT Bioinformatics, University of Maastricht, Maastricht, The Netherlands and 4Inspect.it, Capolona (Arezzo), Italy","institution_ids":["https://openalex.org/I45084792"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5056119983"],"corresponding_institution_ids":["https://openalex.org/I45084792"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.9576,"has_fulltext":true,"cited_by_count":42,"citation_normalized_percentile":{"value":0.91504039,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"23","issue":"19","first_page":"2631","last_page":"2632"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.7542574405670166},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7418782114982605},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6247682571411133},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.566230297088623},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.5614728927612305},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5056040287017822},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4977865219116211},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.48346978425979614},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.475541353225708},{"id":"https://openalex.org/keywords/download","display_name":"Download","score":0.4279102683067322},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4102550446987152},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.257242888212204},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.24770209193229675},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.14132630825042725},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13956007361412048}],"concepts":[{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.7542574405670166},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7418782114982605},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6247682571411133},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.566230297088623},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.5614728927612305},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5056040287017822},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4977865219116211},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.48346978425979614},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.475541353225708},{"id":"https://openalex.org/C2780154274","wikidata":"https://www.wikidata.org/wiki/Q7126717","display_name":"Download","level":2,"score":0.4279102683067322},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4102550446987152},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.257242888212204},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.24770209193229675},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.14132630825042725},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13956007361412048},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btm333","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm333","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/19/2631/16861227/btm333.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17599938","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17599938","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:cris.maastrichtuniversity.nl:openaire/237dd202-e7ec-493b-93a1-62fdb5cafd42","is_oa":true,"landing_page_url":"https://cris.maastrichtuniversity.nl/en/publications/237dd202-e7ec-493b-93a1-62fdb5cafd42","pdf_url":null,"source":{"id":"https://openalex.org/S4306402616","display_name":"Research Publications (Maastricht University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I34352273","host_organization_name":"Maastricht University","host_organization_lineage":["https://openalex.org/I34352273"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Cavalieri, D, Castagnini, C, Toti, S, Maciag, K, Kelder, T A J, Gambineri, L, Anqioli, S & Dolara, P 2007, 'Eu.Gene Analyzer a tool for integrating gene expression data with pathway databases.', Bioinformatics, vol. 23, no. 19, pp. 2631-2632. https://doi.org/10.1093/bioinformatics/btm333","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:flore.unifi.it:2158/251649","is_oa":false,"landing_page_url":"http://hdl.handle.net/2158/251649","pdf_url":null,"source":{"id":"https://openalex.org/S4306402033","display_name":"Florence Research (University of Florence)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45084792","host_organization_name":"University of Florence","host_organization_lineage":["https://openalex.org/I45084792"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:zenodo.org:100671","is_oa":true,"landing_page_url":"https://www.openaccessrepository.it/record/100671","pdf_url":null,"source":{"id":"https://openalex.org/S4306402478","display_name":"INFM-OAR (INFN Catania)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210116497","host_organization_name":"Istituto Nazionale di Fisica Nucleare, Sezione di Catania","host_organization_lineage":["https://openalex.org/I4210116497"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btm333","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm333","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/19/2631/16861227/btm333.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320323054","display_name":"Associazione Italiana per la Ricerca sul Cancro","ror":"https://ror.org/02g2x7380"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2107603310.pdf","grobid_xml":"https://content.openalex.org/works/W2107603310.grobid-xml"},"referenced_works_count":7,"referenced_works":["https://openalex.org/W2021239799","https://openalex.org/W2100474154","https://openalex.org/W2130410032","https://openalex.org/W2147714160","https://openalex.org/W2161441225","https://openalex.org/W2165674132","https://openalex.org/W4210241463"],"related_works":["https://openalex.org/W1502256359","https://openalex.org/W1538236101","https://openalex.org/W2121696621","https://openalex.org/W1571558219","https://openalex.org/W1558040955","https://openalex.org/W185412380","https://openalex.org/W2057087473","https://openalex.org/W2034050865","https://openalex.org/W3091016370","https://openalex.org/W1978349093"],"abstract_inverted_index":{"Eu.Gene":[0,38,105],"Analyzer":[1,106],"is":[2,92,107],"an":[3,28],"easy-to-use,":[4],"stand-alone":[5],"application":[6,111],"that":[7,112],"allows":[8],"rapid":[9],"and":[10,30,46,55,70,97],"powerful":[11],"microarray":[12],"data":[13,58],"analysis":[14],"in":[15,129],"the":[16,35,66,71],"context":[17],"of":[18,42,90,115,126],"biological":[19,81],"pathways.":[20],"Its":[21],"intuitive":[22,132],"graphical":[23],"user":[24],"interface":[25],"makes":[26],"it":[27],"easy":[29],"flexible":[31],"tool,":[32],"even":[33],"for":[34],"first-time":[36],"user.":[37],"supports":[39],"a":[40,108,123,130],"variety":[41],"array":[43],"platforms,":[44],"organisms":[45],"pathway":[47,101,119],"ontologies,":[48],"transparently":[49],"deals":[50],"with":[51],"multiple":[52,118],"nomenclature":[53],"systems":[54],"seamlessly":[56],"integrates":[57],"from":[59,117],"different":[60,63],"sources.":[61],"Two":[62],"statistical":[64],"methods,":[65],"Fisher":[67],"Exact":[68],"Test":[69],"Gene":[72],"Set":[73],"Enrichment":[74],"Analysis":[75],"(GSEA),":[76],"are":[77],"implemented":[78],"to":[79,94,121],"identify":[80],"pathways":[82],"transcriptionally":[83],"affected":[84],"under":[85],"experimental":[86,127],"conditions.":[87],"A":[88],"suite":[89],"tools":[91],"offered":[93],"define,":[95],"visualize":[96],"share":[98],"custom":[99],"non-redundant":[100],"sets.":[102],"In":[103],"conclusion,":[104],"new":[109],"software":[110],"takes":[113],"advantage":[114],"information":[116],"databases":[120],"build":[122],"comprehensive":[124],"interpretation":[125],"results":[128],"simple,":[131],"environment.":[133]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
