{"id":"https://openalex.org/W2167713786","doi":"https://doi.org/10.1093/bioinformatics/btm241","title":"A phylogenetic Gibbs sampler that yields centroid solutions for<i>cis</i>-regulatory site prediction","display_name":"A phylogenetic Gibbs sampler that yields centroid solutions for<i>cis</i>-regulatory site prediction","publication_year":2007,"publication_date":"2007-05-08","ids":{"openalex":"https://openalex.org/W2167713786","doi":"https://doi.org/10.1093/bioinformatics/btm241","mag":"2167713786","pmid":"https://pubmed.ncbi.nlm.nih.gov/17488758"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btm241","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm241","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/14/1718/16858032/btm241.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/23/14/1718/16858032/btm241.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057953740","display_name":"Lee A. Newberg","orcid":"https://orcid.org/0000-0003-4644-8874"},"institutions":[{"id":"https://openalex.org/I165799507","display_name":"Rensselaer Polytechnic Institute","ror":"https://ror.org/01rtyzb94","country_code":"US","type":"education","lineage":["https://openalex.org/I165799507"]},{"id":"https://openalex.org/I1339417872","display_name":"Wadsworth Center","ror":"https://ror.org/050kf9c55","country_code":"US","type":"facility","lineage":["https://openalex.org/I1298060332","https://openalex.org/I1339417872"]},{"id":"https://openalex.org/I1298060332","display_name":"New York State Department of Health","ror":"https://ror.org/04hf5kq57","country_code":"US","type":"government","lineage":["https://openalex.org/I1298060332"]},{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lee A. Newberg","raw_affiliation_strings":["1 The Wadsworth Center, New York State Department of Health, Albany, NY 12201, 2Department of Computer Science, Rensselaer Polytechnic Institute, Troy, NY 12180, 3Center for Computational Molecular Biology and the Division of Applied Mathematics, Brown University, Providence, RI 02912 and 4Pacific Northwest National Laboratory, Richland, WA 99352, USA"],"affiliations":[{"raw_affiliation_string":"1 The Wadsworth Center, New York State Department of Health, Albany, NY 12201, 2Department of Computer Science, Rensselaer Polytechnic Institute, Troy, NY 12180, 3Center for Computational Molecular Biology and the Division of Applied Mathematics, Brown University, Providence, RI 02912 and 4Pacific Northwest National Laboratory, Richland, WA 99352, USA","institution_ids":["https://openalex.org/I1339417872","https://openalex.org/I1298060332","https://openalex.org/I165799507","https://openalex.org/I142606810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041840628","display_name":"William A. Thompson","orcid":"https://orcid.org/0000-0003-1306-9034"},"institutions":[{"id":"https://openalex.org/I165799507","display_name":"Rensselaer Polytechnic Institute","ror":"https://ror.org/01rtyzb94","country_code":"US","type":"education","lineage":["https://openalex.org/I165799507"]},{"id":"https://openalex.org/I1298060332","display_name":"New York State Department of Health","ror":"https://ror.org/04hf5kq57","country_code":"US","type":"government","lineage":["https://openalex.org/I1298060332"]},{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I1339417872","display_name":"Wadsworth Center","ror":"https://ror.org/050kf9c55","country_code":"US","type":"facility","lineage":["https://openalex.org/I1298060332","https://openalex.org/I1339417872"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"William A. Thompson","raw_affiliation_strings":["1 The Wadsworth Center, New York State Department of Health, Albany, NY 12201, 2Department of Computer Science, Rensselaer Polytechnic Institute, Troy, NY 12180, 3Center for Computational Molecular Biology and the Division of Applied Mathematics, Brown University, Providence, RI 02912 and 4Pacific Northwest National Laboratory, Richland, WA 99352, USA"],"affiliations":[{"raw_affiliation_string":"1 The Wadsworth Center, New York State Department of Health, Albany, NY 12201, 2Department of Computer Science, Rensselaer Polytechnic Institute, Troy, NY 12180, 3Center for Computational Molecular Biology and the Division of Applied Mathematics, Brown University, Providence, RI 02912 and 4Pacific Northwest National Laboratory, Richland, WA 99352, USA","institution_ids":["https://openalex.org/I1339417872","https://openalex.org/I1298060332","https://openalex.org/I165799507","https://openalex.org/I142606810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059753635","display_name":"Sean Conlan","orcid":"https://orcid.org/0000-0001-6848-3465"},"institutions":[{"id":"https://openalex.org/I1339417872","display_name":"Wadsworth Center","ror":"https://ror.org/050kf9c55","country_code":"US","type":"facility","lineage":["https://openalex.org/I1298060332","https://openalex.org/I1339417872"]},{"id":"https://openalex.org/I165799507","display_name":"Rensselaer Polytechnic Institute","ror":"https://ror.org/01rtyzb94","country_code":"US","type":"education","lineage":["https://openalex.org/I165799507"]},{"id":"https://openalex.org/I1298060332","display_name":"New York State Department of Health","ror":"https://ror.org/04hf5kq57","country_code":"US","type":"government","lineage":["https://openalex.org/I1298060332"]},{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sean Conlan","raw_affiliation_strings":["1 The Wadsworth Center, New York State Department of Health, Albany, NY 12201, 2Department of Computer Science, Rensselaer Polytechnic Institute, Troy, NY 12180, 3Center for Computational Molecular Biology and the Division of Applied Mathematics, Brown University, Providence, RI 02912 and 4Pacific Northwest National Laboratory, Richland, WA 99352, USA"],"affiliations":[{"raw_affiliation_string":"1 The Wadsworth Center, New York State Department of Health, Albany, NY 12201, 2Department of Computer Science, Rensselaer Polytechnic Institute, Troy, NY 12180, 3Center for Computational Molecular Biology and the Division of Applied Mathematics, Brown University, Providence, RI 02912 and 4Pacific Northwest National Laboratory, Richland, WA 99352, USA","institution_ids":["https://openalex.org/I1339417872","https://openalex.org/I1298060332","https://openalex.org/I165799507","https://openalex.org/I142606810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044471951","display_name":"Thomas M. Smith","orcid":"https://orcid.org/0000-0001-6343-2490"},"institutions":[{"id":"https://openalex.org/I1339417872","display_name":"Wadsworth Center","ror":"https://ror.org/050kf9c55","country_code":"US","type":"facility","lineage":["https://openalex.org/I1298060332","https://openalex.org/I1339417872"]},{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I1298060332","display_name":"New York State Department of Health","ror":"https://ror.org/04hf5kq57","country_code":"US","type":"government","lineage":["https://openalex.org/I1298060332"]},{"id":"https://openalex.org/I165799507","display_name":"Rensselaer Polytechnic Institute","ror":"https://ror.org/01rtyzb94","country_code":"US","type":"education","lineage":["https://openalex.org/I165799507"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Thomas M. Smith","raw_affiliation_strings":["1 The Wadsworth Center, New York State Department of Health, Albany, NY 12201, 2Department of Computer Science, Rensselaer Polytechnic Institute, Troy, NY 12180, 3Center for Computational Molecular Biology and the Division of Applied Mathematics, Brown University, Providence, RI 02912 and 4Pacific Northwest National Laboratory, Richland, WA 99352, USA"],"affiliations":[{"raw_affiliation_string":"1 The Wadsworth Center, New York State Department of Health, Albany, NY 12201, 2Department of Computer Science, Rensselaer Polytechnic Institute, Troy, NY 12180, 3Center for Computational Molecular Biology and the Division of Applied Mathematics, Brown University, Providence, RI 02912 and 4Pacific Northwest National Laboratory, Richland, WA 99352, USA","institution_ids":["https://openalex.org/I1339417872","https://openalex.org/I1298060332","https://openalex.org/I165799507","https://openalex.org/I142606810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055701440","display_name":"Lee Ann McCue","orcid":"https://orcid.org/0000-0003-4456-517X"},"institutions":[{"id":"https://openalex.org/I165799507","display_name":"Rensselaer Polytechnic Institute","ror":"https://ror.org/01rtyzb94","country_code":"US","type":"education","lineage":["https://openalex.org/I165799507"]},{"id":"https://openalex.org/I1298060332","display_name":"New York State Department of Health","ror":"https://ror.org/04hf5kq57","country_code":"US","type":"government","lineage":["https://openalex.org/I1298060332"]},{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I1339417872","display_name":"Wadsworth Center","ror":"https://ror.org/050kf9c55","country_code":"US","type":"facility","lineage":["https://openalex.org/I1298060332","https://openalex.org/I1339417872"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lee Ann McCue","raw_affiliation_strings":["1 The Wadsworth Center, New York State Department of Health, Albany, NY 12201, 2Department of Computer Science, Rensselaer Polytechnic Institute, Troy, NY 12180, 3Center for Computational Molecular Biology and the Division of Applied Mathematics, Brown University, Providence, RI 02912 and 4Pacific Northwest National Laboratory, Richland, WA 99352, USA"],"affiliations":[{"raw_affiliation_string":"1 The Wadsworth Center, New York State Department of Health, Albany, NY 12201, 2Department of Computer Science, Rensselaer Polytechnic Institute, Troy, NY 12180, 3Center for Computational Molecular Biology and the Division of Applied Mathematics, Brown University, Providence, RI 02912 and 4Pacific Northwest National Laboratory, Richland, WA 99352, USA","institution_ids":["https://openalex.org/I1339417872","https://openalex.org/I1298060332","https://openalex.org/I165799507","https://openalex.org/I142606810"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026511725","display_name":"Charles E. Lawrence","orcid":"https://orcid.org/0000-0003-4011-6692"},"institutions":[{"id":"https://openalex.org/I165799507","display_name":"Rensselaer Polytechnic Institute","ror":"https://ror.org/01rtyzb94","country_code":"US","type":"education","lineage":["https://openalex.org/I165799507"]},{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I1339417872","display_name":"Wadsworth Center","ror":"https://ror.org/050kf9c55","country_code":"US","type":"facility","lineage":["https://openalex.org/I1298060332","https://openalex.org/I1339417872"]},{"id":"https://openalex.org/I1298060332","display_name":"New York State Department of Health","ror":"https://ror.org/04hf5kq57","country_code":"US","type":"government","lineage":["https://openalex.org/I1298060332"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Charles E. Lawrence","raw_affiliation_strings":["1 The Wadsworth Center, New York State Department of Health, Albany, NY 12201, 2Department of Computer Science, Rensselaer Polytechnic Institute, Troy, NY 12180, 3Center for Computational Molecular Biology and the Division of Applied Mathematics, Brown University, Providence, RI 02912 and 4Pacific Northwest National Laboratory, Richland, WA 99352, USA"],"affiliations":[{"raw_affiliation_string":"1 The Wadsworth Center, New York State Department of Health, Albany, NY 12201, 2Department of Computer Science, Rensselaer Polytechnic Institute, Troy, NY 12180, 3Center for Computational Molecular Biology and the Division of Applied Mathematics, Brown University, Providence, RI 02912 and 4Pacific Northwest National Laboratory, Richland, WA 99352, USA","institution_ids":["https://openalex.org/I1339417872","https://openalex.org/I1298060332","https://openalex.org/I165799507","https://openalex.org/I142606810"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5041840628","https://openalex.org/A5044471951"],"corresponding_institution_ids":["https://openalex.org/I1298060332","https://openalex.org/I1339417872","https://openalex.org/I142606810","https://openalex.org/I165799507"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":2.4092,"has_fulltext":false,"cited_by_count":42,"citation_normalized_percentile":{"value":0.89037136,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"23","issue":"14","first_page":"1718","last_page":"1727"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/centroid","display_name":"Centroid","score":0.827006459236145},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.660524845123291},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.39252421259880066},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.3485032916069031},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3083285391330719},{"id":"https://openalex.org/keywords/geometry","display_name":"Geometry","score":0.12845510244369507},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11927720904350281},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.05891013145446777}],"concepts":[{"id":"https://openalex.org/C146599234","wikidata":"https://www.wikidata.org/wiki/Q511093","display_name":"Centroid","level":2,"score":0.827006459236145},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.660524845123291},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.39252421259880066},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.3485032916069031},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3083285391330719},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.12845510244369507},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11927720904350281},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.05891013145446777}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012045","descriptor_name":"Regulatory Sequences, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012045","descriptor_name":"Regulatory Sequences, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012045","descriptor_name":"Regulatory Sequences, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012045","descriptor_name":"Regulatory Sequences, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btm241","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm241","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/14/1718/16858032/btm241.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17488758","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17488758","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2268014","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2268014","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btm241","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm241","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/14/1718/16858032/btm241.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4000000059604645,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320306250","display_name":"Battelle","ror":"https://ror.org/01h5tnr73"},{"id":"https://openalex.org/F4320309070","display_name":"Brown University","ror":"https://ror.org/05gq02987"},{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320338354","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2167713786.pdf","grobid_xml":"https://content.openalex.org/works/W2167713786.grobid-xml"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W1512810258","https://openalex.org/W1554206434","https://openalex.org/W1574786390","https://openalex.org/W1984053739","https://openalex.org/W1984984816","https://openalex.org/W1988088510","https://openalex.org/W1994958179","https://openalex.org/W2001717309","https://openalex.org/W2015316514","https://openalex.org/W2016839209","https://openalex.org/W2051867008","https://openalex.org/W2062872358","https://openalex.org/W2067524083","https://openalex.org/W2068225247","https://openalex.org/W2069629144","https://openalex.org/W2069739265","https://openalex.org/W2074530889","https://openalex.org/W2077013196","https://openalex.org/W2087101057","https://openalex.org/W2089657469","https://openalex.org/W2091389826","https://openalex.org/W2097026233","https://openalex.org/W2102231586","https://openalex.org/W2102424972","https://openalex.org/W2111205680","https://openalex.org/W2111984347","https://openalex.org/W2134591904","https://openalex.org/W2135221645","https://openalex.org/W2138309709","https://openalex.org/W2161965550","https://openalex.org/W2162111678","https://openalex.org/W2168786813","https://openalex.org/W2177265400","https://openalex.org/W2247766769","https://openalex.org/W2519703809","https://openalex.org/W2798191126","https://openalex.org/W3199943451","https://openalex.org/W3214380909","https://openalex.org/W4245668478","https://openalex.org/W4247851360","https://openalex.org/W6633022324","https://openalex.org/W6634277808","https://openalex.org/W6646545609","https://openalex.org/W6669192394"],"related_works":["https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W1971568933","https://openalex.org/W1641042124"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":6}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2016-06-24T00:00:00"}
