{"id":"https://openalex.org/W2111576144","doi":"https://doi.org/10.1093/bioinformatics/btm111","title":"Using DNA microarrays to study gene expression in closely related species","display_name":"Using DNA microarrays to study gene expression in closely related species","publication_year":2007,"publication_date":"2007-03-23","ids":{"openalex":"https://openalex.org/W2111576144","doi":"https://doi.org/10.1093/bioinformatics/btm111","mag":"2111576144","pmid":"https://pubmed.ncbi.nlm.nih.gov/17384014"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btm111","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm111","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/10/1235/49813126/bioinformatics_23_10_1235.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/23/10/1235/49813126/bioinformatics_23_10_1235.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066632434","display_name":"Alicia Oshlack","orcid":"https://orcid.org/0000-0001-9788-5690"},"institutions":[{"id":"https://openalex.org/I196021976","display_name":"Walter and Eliza Hall Institute of Medical Research","ror":"https://ror.org/01b6kha49","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I196021976"]},{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["AU","US"],"is_corresponding":true,"raw_author_name":"Alicia Oshlack","raw_affiliation_strings":["1 Walter and Eliza Hall Institute of Medical Research, Parkville, Vic 3050, Australia and 2Department of Human Genetics, University of Chicago, Chicago, IL 60605, USA"],"affiliations":[{"raw_affiliation_string":"1 Walter and Eliza Hall Institute of Medical Research, Parkville, Vic 3050, Australia and 2Department of Human Genetics, University of Chicago, Chicago, IL 60605, USA","institution_ids":["https://openalex.org/I196021976","https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023888891","display_name":"Adrien E. Chabot","orcid":null},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]},{"id":"https://openalex.org/I196021976","display_name":"Walter and Eliza Hall Institute of Medical Research","ror":"https://ror.org/01b6kha49","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I196021976"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"Adrien E. Chabot","raw_affiliation_strings":["1 Walter and Eliza Hall Institute of Medical Research, Parkville, Vic 3050, Australia and 2Department of Human Genetics, University of Chicago, Chicago, IL 60605, USA"],"affiliations":[{"raw_affiliation_string":"1 Walter and Eliza Hall Institute of Medical Research, Parkville, Vic 3050, Australia and 2Department of Human Genetics, University of Chicago, Chicago, IL 60605, USA","institution_ids":["https://openalex.org/I196021976","https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054704071","display_name":"Gordon K. Smyth","orcid":"https://orcid.org/0000-0001-9221-2892"},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]},{"id":"https://openalex.org/I196021976","display_name":"Walter and Eliza Hall Institute of Medical Research","ror":"https://ror.org/01b6kha49","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I196021976"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"Gordon K. Smyth","raw_affiliation_strings":["1 Walter and Eliza Hall Institute of Medical Research, Parkville, Vic 3050, Australia and 2Department of Human Genetics, University of Chicago, Chicago, IL 60605, USA"],"affiliations":[{"raw_affiliation_string":"1 Walter and Eliza Hall Institute of Medical Research, Parkville, Vic 3050, Australia and 2Department of Human Genetics, University of Chicago, Chicago, IL 60605, USA","institution_ids":["https://openalex.org/I196021976","https://openalex.org/I40347166"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014642082","display_name":"Yoav Gilad","orcid":"https://orcid.org/0000-0001-8284-8926"},"institutions":[{"id":"https://openalex.org/I196021976","display_name":"Walter and Eliza Hall Institute of Medical Research","ror":"https://ror.org/01b6kha49","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I196021976"]},{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"Yoav Gilad","raw_affiliation_strings":["1 Walter and Eliza Hall Institute of Medical Research, Parkville, Vic 3050, Australia and 2Department of Human Genetics, University of Chicago, Chicago, IL 60605, USA"],"affiliations":[{"raw_affiliation_string":"1 Walter and Eliza Hall Institute of Medical Research, Parkville, Vic 3050, Australia and 2Department of Human Genetics, University of Chicago, Chicago, IL 60605, USA","institution_ids":["https://openalex.org/I196021976","https://openalex.org/I40347166"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5066632434"],"corresponding_institution_ids":["https://openalex.org/I196021976","https://openalex.org/I40347166"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":5.6472,"has_fulltext":true,"cited_by_count":67,"citation_normalized_percentile":{"value":0.96929938,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"23","issue":"10","first_page":"1235","last_page":"1242"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9872999787330627,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.9060990214347839},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7743639945983887},{"id":"https://openalex.org/keywords/microarray","display_name":"Microarray","score":0.7358667254447937},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.645384669303894},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.628630518913269},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6004952192306519},{"id":"https://openalex.org/keywords/gene-chip-analysis","display_name":"Gene chip analysis","score":0.5551222562789917},{"id":"https://openalex.org/keywords/gene-expression-profiling","display_name":"Gene expression profiling","score":0.523343026638031},{"id":"https://openalex.org/keywords/complementary-dna","display_name":"Complementary DNA","score":0.5204454064369202},{"id":"https://openalex.org/keywords/microarray-analysis-techniques","display_name":"Microarray analysis techniques","score":0.5055282115936279},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.505160391330719},{"id":"https://openalex.org/keywords/phenotype","display_name":"Phenotype","score":0.4367217421531677},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.3407066762447357},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3233160674571991}],"concepts":[{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.9060990214347839},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7743639945983887},{"id":"https://openalex.org/C186836561","wikidata":"https://www.wikidata.org/wiki/Q1931516","display_name":"Microarray","level":4,"score":0.7358667254447937},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.645384669303894},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.628630518913269},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6004952192306519},{"id":"https://openalex.org/C24361400","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Gene chip analysis","level":5,"score":0.5551222562789917},{"id":"https://openalex.org/C18431079","wikidata":"https://www.wikidata.org/wiki/Q1502169","display_name":"Gene expression profiling","level":4,"score":0.523343026638031},{"id":"https://openalex.org/C187882448","wikidata":"https://www.wikidata.org/wiki/Q283478","display_name":"Complementary DNA","level":3,"score":0.5204454064369202},{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.5055282115936279},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.505160391330719},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.4367217421531677},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3407066762447357},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3233160674571991}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011323","descriptor_name":"Primates","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011323","descriptor_name":"Primates","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011323","descriptor_name":"Primates","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018075","descriptor_name":"RNA, Complementary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018075","descriptor_name":"RNA, Complementary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018075","descriptor_name":"RNA, Complementary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018076","descriptor_name":"DNA, Complementary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018076","descriptor_name":"DNA, Complementary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018076","descriptor_name":"DNA, Complementary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btm111","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm111","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/10/1235/49813126/bioinformatics_23_10_1235.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17384014","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17384014","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btm111","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm111","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/10/1235/49813126/bioinformatics_23_10_1235.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.6399999856948853}],"awards":[{"id":"https://openalex.org/G2007800266","display_name":null,"funder_award_id":"257529","funder_id":"https://openalex.org/F4320334705","funder_display_name":"National Health and Medical Research Council"}],"funders":[{"id":"https://openalex.org/F4320334705","display_name":"National Health and Medical Research Council","ror":"https://ror.org/011kf5r70"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2111576144.pdf","grobid_xml":"https://content.openalex.org/works/W2111576144.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W641275596","https://openalex.org/W1533335653","https://openalex.org/W1546952499","https://openalex.org/W1549647993","https://openalex.org/W1587094587","https://openalex.org/W1593470657","https://openalex.org/W1689369637","https://openalex.org/W1971977350","https://openalex.org/W2010637767","https://openalex.org/W2014279841","https://openalex.org/W2017093817","https://openalex.org/W2018843280","https://openalex.org/W2033934032","https://openalex.org/W2049089966","https://openalex.org/W2052188398","https://openalex.org/W2062619252","https://openalex.org/W2066908868","https://openalex.org/W2078586740","https://openalex.org/W2081098333","https://openalex.org/W2084112513","https://openalex.org/W2089812316","https://openalex.org/W2090512662","https://openalex.org/W2093477772","https://openalex.org/W2095178364","https://openalex.org/W2100668965","https://openalex.org/W2103320667","https://openalex.org/W2110065044","https://openalex.org/W2110225946","https://openalex.org/W2119274294","https://openalex.org/W2131160279","https://openalex.org/W2138610208","https://openalex.org/W2142415307","https://openalex.org/W2143364665","https://openalex.org/W2147881874","https://openalex.org/W2154542179","https://openalex.org/W2156523138","https://openalex.org/W2160618807","https://openalex.org/W2167908770","https://openalex.org/W2169428598","https://openalex.org/W2169686453","https://openalex.org/W2170824309","https://openalex.org/W2170989872","https://openalex.org/W4206439534"],"related_works":["https://openalex.org/W3004855132","https://openalex.org/W2767847608","https://openalex.org/W2361788533","https://openalex.org/W2051808073","https://openalex.org/W2015700328","https://openalex.org/W170658859","https://openalex.org/W1996185163","https://openalex.org/W2081127504","https://openalex.org/W4310366902","https://openalex.org/W2490137852"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}