{"id":"https://openalex.org/W2136846651","doi":"https://doi.org/10.1093/bioinformatics/btl570","title":"Reliable prediction of Drosha processing sites improves microRNA gene prediction","display_name":"Reliable prediction of Drosha processing sites improves microRNA gene prediction","publication_year":2006,"publication_date":"2006-11-14","ids":{"openalex":"https://openalex.org/W2136846651","doi":"https://doi.org/10.1093/bioinformatics/btl570","mag":"2136846651","pmid":"https://pubmed.ncbi.nlm.nih.gov/17105718"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btl570","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl570","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049621459","display_name":"Snorre Andreas Helvik","orcid":null},"institutions":[{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Snorre A. Helvik","raw_affiliation_strings":["Department of Computer and Information Science, Norwegian University of Science and Technology 1 \u00a0 1 \u00a0 \u00a0 NO-7052 Trondheim, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science, Norwegian University of Science and Technology 1 \u00a0 1 \u00a0 \u00a0 NO-7052 Trondheim, Norway","institution_ids":["https://openalex.org/I204778367"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079695556","display_name":"Ola Sn\u00f8ve","orcid":null},"institutions":[{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Ola Sn\u00f8ve","raw_affiliation_strings":["Department of Cancer Research and Molecular Medicine, Faculty of Medicine, Norwegian University of Science and Technology 3 \u00a0 3 \u00a0 \u00a0 N0-7489 Trondheim, Norway","Interagon AS, Laboratoriesenteret 2 \u00a0 2 \u00a0 \u00a0 NO-7006 Trondheim, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Cancer Research and Molecular Medicine, Faculty of Medicine, Norwegian University of Science and Technology 3 \u00a0 3 \u00a0 \u00a0 N0-7489 Trondheim, Norway","institution_ids":["https://openalex.org/I204778367"]},{"raw_affiliation_string":"Interagon AS, Laboratoriesenteret 2 \u00a0 2 \u00a0 \u00a0 NO-7006 Trondheim, Norway","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081217777","display_name":"P\u00e5l S\u00e6trom","orcid":"https://orcid.org/0000-0001-8142-7441"},"institutions":[{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]}],"countries":["NO"],"is_corresponding":true,"raw_author_name":"P\u00e5l S\u00e6trom","raw_affiliation_strings":["Department of Computer and Information Science, Norwegian University of Science and Technology 1 \u00a0 1 \u00a0 \u00a0 NO-7052 Trondheim, Norway","Interagon AS, Laboratoriesenteret 2 \u00a0 2 \u00a0 \u00a0 NO-7006 Trondheim, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science, Norwegian University of Science and Technology 1 \u00a0 1 \u00a0 \u00a0 NO-7052 Trondheim, Norway","institution_ids":["https://openalex.org/I204778367"]},{"raw_affiliation_string":"Interagon AS, Laboratoriesenteret 2 \u00a0 2 \u00a0 \u00a0 NO-7006 Trondheim, Norway","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5081217777"],"corresponding_institution_ids":["https://openalex.org/I204778367"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":4.6636,"has_fulltext":false,"cited_by_count":98,"citation_normalized_percentile":{"value":0.95591631,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"23","issue":"2","first_page":"142","last_page":"149"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/drosha","display_name":"Drosha","score":0.9938398003578186},{"id":"https://openalex.org/keywords/dicer","display_name":"Dicer","score":0.7146947383880615},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.6918402314186096},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.6525768041610718},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.5838029384613037},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.558138370513916},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.502739429473877},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3653321862220764},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.34473466873168945},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3259155750274658},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.20731908082962036},{"id":"https://openalex.org/keywords/rna-interference","display_name":"RNA interference","score":0.16605466604232788},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.06266874074935913}],"concepts":[{"id":"https://openalex.org/C2776802755","wikidata":"https://www.wikidata.org/wiki/Q261483","display_name":"Drosha","level":5,"score":0.9938398003578186},{"id":"https://openalex.org/C2779867133","wikidata":"https://www.wikidata.org/wiki/Q21111297","display_name":"Dicer","level":5,"score":0.7146947383880615},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.6918402314186096},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.6525768041610718},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.5838029384613037},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.558138370513916},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.502739429473877},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3653321862220764},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.34473466873168945},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3259155750274658},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.20731908082962036},{"id":"https://openalex.org/C166703698","wikidata":"https://www.wikidata.org/wiki/Q201993","display_name":"RNA interference","level":4,"score":0.16605466604232788},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.06266874074935913}],"mesh":[{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012323","descriptor_name":"RNA Processing, Post-Transcriptional","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012323","descriptor_name":"RNA Processing, Post-Transcriptional","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012323","descriptor_name":"RNA Processing, Post-Transcriptional","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D043244","descriptor_name":"Ribonuclease III","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D043244","descriptor_name":"Ribonuclease III","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D043244","descriptor_name":"Ribonuclease III","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btl570","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl570","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17105718","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17105718","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":50,"referenced_works":["https://openalex.org/W144423133","https://openalex.org/W854322902","https://openalex.org/W1648301895","https://openalex.org/W1680392829","https://openalex.org/W1845151788","https://openalex.org/W1920564293","https://openalex.org/W1967633197","https://openalex.org/W1977064582","https://openalex.org/W1980269624","https://openalex.org/W1985974546","https://openalex.org/W1993799748","https://openalex.org/W2014946489","https://openalex.org/W2016294118","https://openalex.org/W2017642141","https://openalex.org/W2020458511","https://openalex.org/W2038766179","https://openalex.org/W2038783205","https://openalex.org/W2045402423","https://openalex.org/W2047526957","https://openalex.org/W2050066317","https://openalex.org/W2054109341","https://openalex.org/W2066213138","https://openalex.org/W2082213106","https://openalex.org/W2085442947","https://openalex.org/W2098044747","https://openalex.org/W2103250001","https://openalex.org/W2109831613","https://openalex.org/W2111436354","https://openalex.org/W2117991391","https://openalex.org/W2123079914","https://openalex.org/W2124531879","https://openalex.org/W2125523949","https://openalex.org/W2126732736","https://openalex.org/W2128882718","https://openalex.org/W2130979840","https://openalex.org/W2133763262","https://openalex.org/W2136148915","https://openalex.org/W2136991248","https://openalex.org/W2137257434","https://openalex.org/W2139212933","https://openalex.org/W2140446903","https://openalex.org/W2149291473","https://openalex.org/W2150770935","https://openalex.org/W2153478121","https://openalex.org/W2157569278","https://openalex.org/W2157825442","https://openalex.org/W2161283857","https://openalex.org/W2165764599","https://openalex.org/W2168230240","https://openalex.org/W6637386731"],"related_works":["https://openalex.org/W2895040015","https://openalex.org/W2299595562","https://openalex.org/W2142223308","https://openalex.org/W3022306555","https://openalex.org/W1571427930","https://openalex.org/W2188380310","https://openalex.org/W1968525732","https://openalex.org/W2071572917","https://openalex.org/W2081766653","https://openalex.org/W2767478808"],"abstract_inverted_index":{"The":[0],"classifiers":[1],"are":[2],"publicly":[3],"available":[4],"at":[5],"https://demo1.interagon.com/miRNA/":[6]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":8},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":10}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
