{"id":"https://openalex.org/W2102653059","doi":"https://doi.org/10.1093/bioinformatics/btl485","title":"COPASI\u2014a COmplex PAthway SImulator","display_name":"COPASI\u2014a COmplex PAthway SImulator","publication_year":2006,"publication_date":"2006-10-10","ids":{"openalex":"https://openalex.org/W2102653059","doi":"https://doi.org/10.1093/bioinformatics/btl485","mag":"2102653059","pmid":"https://pubmed.ncbi.nlm.nih.gov/17032683"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btl485","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl485","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/24/3067/48838880/bioinformatics_22_24_3067.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/22/24/3067/48838880/bioinformatics_22_24_3067.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081050112","display_name":"Stefan Hoops","orcid":"https://orcid.org/0000-0001-8503-8371"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Stefan Hoops","raw_affiliation_strings":["Virginia Bioinformatics Institute, Virginia Tech 1 \u00a0 1 \u00a0 \u00a0 Washington St. 0477, Blacksburg, VA 24061, USA"],"affiliations":[{"raw_affiliation_string":"Virginia Bioinformatics Institute, Virginia Tech 1 \u00a0 1 \u00a0 \u00a0 Washington St. 0477, Blacksburg, VA 24061, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111964760","display_name":"Sven Sahle","orcid":null},"institutions":[{"id":"https://openalex.org/I4210110633","display_name":"European Media Laboratory (Germany)","ror":"https://ror.org/02rbfgr17","country_code":"DE","type":"company","lineage":["https://openalex.org/I4210110633"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sven Sahle","raw_affiliation_strings":["Bioinformatics and Computational Biochemistry, EML Research 2 \u00a0 2 \u00a0 \u00a0 Schloss-Wolfsbrunnenweg 33, D-69118 Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"Bioinformatics and Computational Biochemistry, EML Research 2 \u00a0 2 \u00a0 \u00a0 Schloss-Wolfsbrunnenweg 33, D-69118 Heidelberg, Germany","institution_ids":["https://openalex.org/I4210110633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041448665","display_name":"Ralph Gauges","orcid":null},"institutions":[{"id":"https://openalex.org/I4210110633","display_name":"European Media Laboratory (Germany)","ror":"https://ror.org/02rbfgr17","country_code":"DE","type":"company","lineage":["https://openalex.org/I4210110633"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ralph Gauges","raw_affiliation_strings":["Bioinformatics and Computational Biochemistry, EML Research 2 \u00a0 2 \u00a0 \u00a0 Schloss-Wolfsbrunnenweg 33, D-69118 Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"Bioinformatics and Computational Biochemistry, EML Research 2 \u00a0 2 \u00a0 \u00a0 Schloss-Wolfsbrunnenweg 33, D-69118 Heidelberg, Germany","institution_ids":["https://openalex.org/I4210110633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100604541","display_name":"Christine Lee","orcid":"https://orcid.org/0000-0002-3383-6360"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christine Lee","raw_affiliation_strings":["Virginia Bioinformatics Institute, Virginia Tech 1 \u00a0 1 \u00a0 \u00a0 Washington St. 0477, Blacksburg, VA 24061, USA"],"affiliations":[{"raw_affiliation_string":"Virginia Bioinformatics Institute, Virginia Tech 1 \u00a0 1 \u00a0 \u00a0 Washington St. 0477, Blacksburg, VA 24061, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041635420","display_name":"J\u00fcrgen Pahle","orcid":"https://orcid.org/0000-0002-7637-7547"},"institutions":[{"id":"https://openalex.org/I4210110633","display_name":"European Media Laboratory (Germany)","ror":"https://ror.org/02rbfgr17","country_code":"DE","type":"company","lineage":["https://openalex.org/I4210110633"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"J\u00fcrgen Pahle","raw_affiliation_strings":["Bioinformatics and Computational Biochemistry, EML Research 2 \u00a0 2 \u00a0 \u00a0 Schloss-Wolfsbrunnenweg 33, D-69118 Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"Bioinformatics and Computational Biochemistry, EML Research 2 \u00a0 2 \u00a0 \u00a0 Schloss-Wolfsbrunnenweg 33, D-69118 Heidelberg, Germany","institution_ids":["https://openalex.org/I4210110633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030791830","display_name":"Natalia Simus","orcid":null},"institutions":[{"id":"https://openalex.org/I4210110633","display_name":"European Media Laboratory (Germany)","ror":"https://ror.org/02rbfgr17","country_code":"DE","type":"company","lineage":["https://openalex.org/I4210110633"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Natalia Simus","raw_affiliation_strings":["Bioinformatics and Computational Biochemistry, EML Research 2 \u00a0 2 \u00a0 \u00a0 Schloss-Wolfsbrunnenweg 33, D-69118 Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"Bioinformatics and Computational Biochemistry, EML Research 2 \u00a0 2 \u00a0 \u00a0 Schloss-Wolfsbrunnenweg 33, D-69118 Heidelberg, Germany","institution_ids":["https://openalex.org/I4210110633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103547404","display_name":"Mudita Singhal","orcid":null},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mudita Singhal","raw_affiliation_strings":["Virginia Bioinformatics Institute, Virginia Tech 1 \u00a0 1 \u00a0 \u00a0 Washington St. 0477, Blacksburg, VA 24061, USA"],"affiliations":[{"raw_affiliation_string":"Virginia Bioinformatics Institute, Virginia Tech 1 \u00a0 1 \u00a0 \u00a0 Washington St. 0477, Blacksburg, VA 24061, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010135640","display_name":"Liang Xu","orcid":"https://orcid.org/0000-0002-5528-1298"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Liang Xu","raw_affiliation_strings":["Virginia Bioinformatics Institute, Virginia Tech 1 \u00a0 1 \u00a0 \u00a0 Washington St. 0477, Blacksburg, VA 24061, USA"],"affiliations":[{"raw_affiliation_string":"Virginia Bioinformatics Institute, Virginia Tech 1 \u00a0 1 \u00a0 \u00a0 Washington St. 0477, Blacksburg, VA 24061, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058635802","display_name":"Pedro Mendes","orcid":"https://orcid.org/0000-0001-6507-9168"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pedro Mendes","raw_affiliation_strings":["Virginia Bioinformatics Institute, Virginia Tech 1 \u00a0 1 \u00a0 \u00a0 Washington St. 0477, Blacksburg, VA 24061, USA"],"affiliations":[{"raw_affiliation_string":"Virginia Bioinformatics Institute, Virginia Tech 1 \u00a0 1 \u00a0 \u00a0 Washington St. 0477, Blacksburg, VA 24061, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036398559","display_name":"Ursula Kummer","orcid":null},"institutions":[{"id":"https://openalex.org/I4210110633","display_name":"European Media Laboratory (Germany)","ror":"https://ror.org/02rbfgr17","country_code":"DE","type":"company","lineage":["https://openalex.org/I4210110633"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ursula Kummer","raw_affiliation_strings":["Bioinformatics and Computational Biochemistry, EML Research 2 \u00a0 2 \u00a0 \u00a0 Schloss-Wolfsbrunnenweg 33, D-69118 Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"Bioinformatics and Computational Biochemistry, EML Research 2 \u00a0 2 \u00a0 \u00a0 Schloss-Wolfsbrunnenweg 33, D-69118 Heidelberg, Germany","institution_ids":["https://openalex.org/I4210110633"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5081050112"],"corresponding_institution_ids":["https://openalex.org/I859038795"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":31.4676,"has_fulltext":true,"cited_by_count":2676,"citation_normalized_percentile":{"value":0.999118,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"22","issue":"24","first_page":"3067","last_page":"3074"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9897000193595886,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/executable","display_name":"Executable","score":0.9060847759246826},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8301477432250977},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6397534012794495},{"id":"https://openalex.org/keywords/stochastic-simulation","display_name":"Stochastic simulation","score":0.5748078227043152},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5367575287818909},{"id":"https://openalex.org/keywords/license","display_name":"License","score":0.44321373105049133},{"id":"https://openalex.org/keywords/generator","display_name":"Generator (circuit theory)","score":0.43917766213417053},{"id":"https://openalex.org/keywords/simulation-software","display_name":"Simulation software","score":0.43616020679473877},{"id":"https://openalex.org/keywords/simulation","display_name":"Simulation","score":0.43352097272872925},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.42468714714050293},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.3478691279888153},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.33476272225379944},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.3188868761062622}],"concepts":[{"id":"https://openalex.org/C160145156","wikidata":"https://www.wikidata.org/wiki/Q778586","display_name":"Executable","level":2,"score":0.9060847759246826},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8301477432250977},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6397534012794495},{"id":"https://openalex.org/C25915931","wikidata":"https://www.wikidata.org/wiki/Q4180825","display_name":"Stochastic simulation","level":2,"score":0.5748078227043152},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5367575287818909},{"id":"https://openalex.org/C2780560020","wikidata":"https://www.wikidata.org/wiki/Q79719","display_name":"License","level":2,"score":0.44321373105049133},{"id":"https://openalex.org/C2780992000","wikidata":"https://www.wikidata.org/wiki/Q17016113","display_name":"Generator (circuit theory)","level":3,"score":0.43917766213417053},{"id":"https://openalex.org/C91757755","wikidata":"https://www.wikidata.org/wiki/Q11121294","display_name":"Simulation software","level":3,"score":0.43616020679473877},{"id":"https://openalex.org/C44154836","wikidata":"https://www.wikidata.org/wiki/Q45045","display_name":"Simulation","level":1,"score":0.43352097272872925},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.42468714714050293},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.3478691279888153},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.33476272225379944},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.3188868761062622},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0},{"id":"https://openalex.org/C163258240","wikidata":"https://www.wikidata.org/wiki/Q25342","display_name":"Power (physics)","level":2,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btl485","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl485","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/24/3067/48838880/bioinformatics_22_24_3067.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17032683","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17032683","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/97e559bc-8219-4cc2-aa38-15180da33fc6","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/97e559bc-8219-4cc2-aa38-15180da33fc6","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Hoops, S, Gauges, R, Lee, C, Pahle, J, Simus, N, Singhal, M, Xu, L, Mendes, P & Kummer, U 2006, 'COPASI - A COmplex PAthway SImulator', Bioinformatics, vol. 22, no. 24, pp. 3067-3074. https://doi.org/10.1093/bioinformatics/btl485","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.135.7514","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.135.7514","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/cgi/reprint/btl485v1.pdf","raw_type":"text"},{"id":"pmh:oai:pure.atira.dk:publications/97e559bc-8219-4cc2-aa38-15180da33fc6","is_oa":false,"landing_page_url":"https://www.research.manchester.ac.uk/portal/en/publications/copasi--a-complex-pathway-simulator(97e559bc-8219-4cc2-aa38-15180da33fc6).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Hoops, S, Gauges, R, Lee, C, Pahle, J, Simus, N, Singhal, M, Xu, L, Mendes, P & Kummer, U 2006, 'COPASI - A COmplex PAthway SImulator', Bioinformatics, vol. 22, no. 24, pp. 3067-3074. https://doi.org/10.1093/bioinformatics/btl485","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btl485","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl485","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/24/3067/48838880/bioinformatics_22_24_3067.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320324316","display_name":"Klaus Tschira Stiftung","ror":"https://ror.org/052jep661"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2102653059.pdf","grobid_xml":"https://content.openalex.org/works/W2102653059.grobid-xml"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W1480928214","https://openalex.org/W1484198052","https://openalex.org/W1495660511","https://openalex.org/W1561767438","https://openalex.org/W1963861745","https://openalex.org/W1964287788","https://openalex.org/W1964491374","https://openalex.org/W1973890190","https://openalex.org/W1982258483","https://openalex.org/W1988425770","https://openalex.org/W1993239172","https://openalex.org/W2002083262","https://openalex.org/W2006743818","https://openalex.org/W2008779528","https://openalex.org/W2033443827","https://openalex.org/W2042321087","https://openalex.org/W2042880070","https://openalex.org/W2044859335","https://openalex.org/W2051959027","https://openalex.org/W2053940560","https://openalex.org/W2074401358","https://openalex.org/W2078734278","https://openalex.org/W2087070363","https://openalex.org/W2095595785","https://openalex.org/W2099039198","https://openalex.org/W2107306984","https://openalex.org/W2111682035","https://openalex.org/W2116583079","https://openalex.org/W2121777611","https://openalex.org/W2131067724","https://openalex.org/W2138261199","https://openalex.org/W2142183404","https://openalex.org/W2143979843","https://openalex.org/W2150908245","https://openalex.org/W2151339633","https://openalex.org/W2151362395","https://openalex.org/W2152254020","https://openalex.org/W2152710595","https://openalex.org/W2153901189","https://openalex.org/W2163855763","https://openalex.org/W2170543954","https://openalex.org/W2256578114","https://openalex.org/W2894656633","https://openalex.org/W2986444355","https://openalex.org/W4229666556","https://openalex.org/W4300886904","https://openalex.org/W6640882963","https://openalex.org/W6680978561"],"related_works":["https://openalex.org/W2606446052","https://openalex.org/W2350278424","https://openalex.org/W2071432835","https://openalex.org/W2036021480","https://openalex.org/W2598672065","https://openalex.org/W3120610872","https://openalex.org/W1638297612","https://openalex.org/W2523911541","https://openalex.org/W2102653059","https://openalex.org/W2122372697"],"abstract_inverted_index":{"The":[0],"complete":[1],"software":[2],"is":[3],"available":[4],"in":[5],"binary":[6],"(executable)":[7],"for":[8],"MS":[9],"Windows,":[10],"OS":[11],"X,":[12],"Linux":[13],"(Intel)":[14],"and":[15],"Sun":[16],"Solaris":[17],"(SPARC),":[18],"as":[19,21],"well":[20],"the":[22],"full":[23],"source":[24,29],"code":[25],"under":[26],"an":[27],"open":[28],"license":[30],"from":[31],"http://www.copasi.org.":[32]},"counts_by_year":[{"year":2026,"cited_by_count":23},{"year":2025,"cited_by_count":157},{"year":2024,"cited_by_count":168},{"year":2023,"cited_by_count":140},{"year":2022,"cited_by_count":165},{"year":2021,"cited_by_count":177},{"year":2020,"cited_by_count":171},{"year":2019,"cited_by_count":151},{"year":2018,"cited_by_count":171},{"year":2017,"cited_by_count":140},{"year":2016,"cited_by_count":154},{"year":2015,"cited_by_count":151},{"year":2014,"cited_by_count":135},{"year":2013,"cited_by_count":165},{"year":2012,"cited_by_count":131}],"updated_date":"2026-04-18T07:56:08.524223","created_date":"2025-10-10T00:00:00"}
