{"id":"https://openalex.org/W2107231094","doi":"https://doi.org/10.1093/bioinformatics/btl276","title":"A suite of algorithms for the comprehensive analysis of complex protein mixtures using high-resolution LC-MS","display_name":"A suite of algorithms for the comprehensive analysis of complex protein mixtures using high-resolution LC-MS","publication_year":2006,"publication_date":"2006-06-09","ids":{"openalex":"https://openalex.org/W2107231094","doi":"https://doi.org/10.1093/bioinformatics/btl276","mag":"2107231094","pmid":"https://pubmed.ncbi.nlm.nih.gov/16766559"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btl276","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl276","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/15/1902/48840036/bioinformatics_22_15_1902.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/22/15/1902/48840036/bioinformatics_22_15_1902.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057877402","display_name":"Matthew Bellew","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Matthew Bellew","raw_affiliation_strings":["LabKey Software, Seattle, WA 1 \u00a0 1 \u00a0 \u00a0 98109, USA"],"affiliations":[{"raw_affiliation_string":"LabKey Software, Seattle, WA 1 \u00a0 1 \u00a0 \u00a0 98109, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052481553","display_name":"Marc Coram","orcid":"https://orcid.org/0000-0002-8877-2501"},"institutions":[{"id":"https://openalex.org/I4210089486","display_name":"Fred Hutch Cancer Center","ror":"https://ror.org/007ps6h72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210089486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marc Coram","raw_affiliation_strings":["Fred Hutchinson Cancer Research Center, Seattle, WA 2 \u00a0 2 \u00a0 \u00a0 98109, USA"],"affiliations":[{"raw_affiliation_string":"Fred Hutchinson Cancer Research Center, Seattle, WA 2 \u00a0 2 \u00a0 \u00a0 98109, USA","institution_ids":["https://openalex.org/I4210089486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091202321","display_name":"Matthew Fitzgibbon","orcid":"https://orcid.org/0009-0008-7557-0442"},"institutions":[{"id":"https://openalex.org/I4210089486","display_name":"Fred Hutch Cancer Center","ror":"https://ror.org/007ps6h72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210089486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matthew Fitzgibbon","raw_affiliation_strings":["Fred Hutchinson Cancer Research Center, Seattle, WA 2 \u00a0 2 \u00a0 \u00a0 98109, USA"],"affiliations":[{"raw_affiliation_string":"Fred Hutchinson Cancer Research Center, Seattle, WA 2 \u00a0 2 \u00a0 \u00a0 98109, USA","institution_ids":["https://openalex.org/I4210089486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008156597","display_name":"Mark Igra","orcid":null},"institutions":[{"id":"https://openalex.org/I4210089486","display_name":"Fred Hutch Cancer Center","ror":"https://ror.org/007ps6h72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210089486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark Igra","raw_affiliation_strings":["Fred Hutchinson Cancer Research Center, Seattle, WA 2 \u00a0 2 \u00a0 \u00a0 98109, USA","LabKey Software, Seattle, WA 1 \u00a0 1 \u00a0 \u00a0 98109, USA"],"affiliations":[{"raw_affiliation_string":"Fred Hutchinson Cancer Research Center, Seattle, WA 2 \u00a0 2 \u00a0 \u00a0 98109, USA","institution_ids":["https://openalex.org/I4210089486"]},{"raw_affiliation_string":"LabKey Software, Seattle, WA 1 \u00a0 1 \u00a0 \u00a0 98109, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102810099","display_name":"Tim R Randolph","orcid":"https://orcid.org/0000-0002-6599-8532"},"institutions":[{"id":"https://openalex.org/I4210089486","display_name":"Fred Hutch Cancer Center","ror":"https://ror.org/007ps6h72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210089486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tim Randolph","raw_affiliation_strings":["Fred Hutchinson Cancer Research Center, Seattle, WA 2 \u00a0 2 \u00a0 \u00a0 98109, USA"],"affiliations":[{"raw_affiliation_string":"Fred Hutchinson Cancer Research Center, Seattle, WA 2 \u00a0 2 \u00a0 \u00a0 98109, USA","institution_ids":["https://openalex.org/I4210089486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100462647","display_name":"Pei Wang","orcid":"https://orcid.org/0000-0002-6890-6453"},"institutions":[{"id":"https://openalex.org/I4210089486","display_name":"Fred Hutch Cancer Center","ror":"https://ror.org/007ps6h72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210089486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pei Wang","raw_affiliation_strings":["Fred Hutchinson Cancer Research Center, Seattle, WA 2 \u00a0 2 \u00a0 \u00a0 98109, USA"],"affiliations":[{"raw_affiliation_string":"Fred Hutchinson Cancer Research Center, Seattle, WA 2 \u00a0 2 \u00a0 \u00a0 98109, USA","institution_ids":["https://openalex.org/I4210089486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019063351","display_name":"Damon May","orcid":"https://orcid.org/0000-0001-6902-3153"},"institutions":[{"id":"https://openalex.org/I4210089486","display_name":"Fred Hutch Cancer Center","ror":"https://ror.org/007ps6h72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210089486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Damon May","raw_affiliation_strings":["Fred Hutchinson Cancer Research Center, Seattle, WA 2 \u00a0 2 \u00a0 \u00a0 98109, USA"],"affiliations":[{"raw_affiliation_string":"Fred Hutchinson Cancer Research Center, Seattle, WA 2 \u00a0 2 \u00a0 \u00a0 98109, USA","institution_ids":["https://openalex.org/I4210089486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011565192","display_name":"Jimmy K. Eng","orcid":"https://orcid.org/0000-0001-6352-6737"},"institutions":[{"id":"https://openalex.org/I4210089486","display_name":"Fred Hutch Cancer Center","ror":"https://ror.org/007ps6h72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210089486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jimmy Eng","raw_affiliation_strings":["Fred Hutchinson Cancer Research Center, Seattle, WA 2 \u00a0 2 \u00a0 \u00a0 98109, USA"],"affiliations":[{"raw_affiliation_string":"Fred Hutchinson Cancer Research Center, Seattle, WA 2 \u00a0 2 \u00a0 \u00a0 98109, USA","institution_ids":["https://openalex.org/I4210089486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022121743","display_name":"Ruihua Fang","orcid":"https://orcid.org/0000-0001-5102-7156"},"institutions":[{"id":"https://openalex.org/I4210089486","display_name":"Fred Hutch Cancer Center","ror":"https://ror.org/007ps6h72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210089486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ruihua Fang","raw_affiliation_strings":["Fred Hutchinson Cancer Research Center, Seattle, WA 2 \u00a0 2 \u00a0 \u00a0 98109, USA"],"affiliations":[{"raw_affiliation_string":"Fred Hutchinson Cancer Research Center, Seattle, WA 2 \u00a0 2 \u00a0 \u00a0 98109, USA","institution_ids":["https://openalex.org/I4210089486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055968334","display_name":"Chenwei Lin","orcid":"https://orcid.org/0000-0001-7025-2770"},"institutions":[{"id":"https://openalex.org/I4210089486","display_name":"Fred Hutch Cancer Center","ror":"https://ror.org/007ps6h72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210089486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"ChenWei Lin","raw_affiliation_strings":["Fred Hutchinson Cancer Research Center, Seattle, WA 2 \u00a0 2 \u00a0 \u00a0 98109, USA"],"affiliations":[{"raw_affiliation_string":"Fred Hutchinson Cancer Research Center, Seattle, WA 2 \u00a0 2 \u00a0 \u00a0 98109, USA","institution_ids":["https://openalex.org/I4210089486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071384354","display_name":"Jinzhi Chen","orcid":"https://orcid.org/0000-0003-4131-771X"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]},{"id":"https://openalex.org/I4210089486","display_name":"Fred Hutch Cancer Center","ror":"https://ror.org/007ps6h72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210089486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jinzhi Chen","raw_affiliation_strings":["Fred Hutchinson Cancer Research Center, Seattle, WA 2 \u00a0 2 \u00a0 \u00a0 98109, USA","University of Washington, Seattle 3 \u00a0 3 \u00a0 \u00a0 WA 98195 USA"],"affiliations":[{"raw_affiliation_string":"Fred Hutchinson Cancer Research Center, Seattle, WA 2 \u00a0 2 \u00a0 \u00a0 98109, USA","institution_ids":["https://openalex.org/I4210089486"]},{"raw_affiliation_string":"University of Washington, Seattle 3 \u00a0 3 \u00a0 \u00a0 WA 98195 USA","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023542709","display_name":"David R. Goodlett","orcid":"https://orcid.org/0000-0002-8045-8200"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Goodlett","raw_affiliation_strings":["University of Washington, Seattle 3 \u00a0 3 \u00a0 \u00a0 WA 98195 USA"],"affiliations":[{"raw_affiliation_string":"University of Washington, Seattle 3 \u00a0 3 \u00a0 \u00a0 WA 98195 USA","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072278856","display_name":"Jeffrey R. Whiteaker","orcid":"https://orcid.org/0000-0001-5042-8580"},"institutions":[{"id":"https://openalex.org/I4210089486","display_name":"Fred Hutch Cancer Center","ror":"https://ror.org/007ps6h72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210089486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeffrey Whiteaker","raw_affiliation_strings":["Fred Hutchinson Cancer Research Center, Seattle, WA 2 \u00a0 2 \u00a0 \u00a0 98109, USA"],"affiliations":[{"raw_affiliation_string":"Fred Hutchinson Cancer Research Center, Seattle, WA 2 \u00a0 2 \u00a0 \u00a0 98109, USA","institution_ids":["https://openalex.org/I4210089486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022925020","display_name":"Amanda G. Paulovich","orcid":"https://orcid.org/0000-0001-6532-6499"},"institutions":[{"id":"https://openalex.org/I4210089486","display_name":"Fred Hutch Cancer Center","ror":"https://ror.org/007ps6h72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210089486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Amanda Paulovich","raw_affiliation_strings":["Fred Hutchinson Cancer Research Center, Seattle, WA 2 \u00a0 2 \u00a0 \u00a0 98109, USA"],"affiliations":[{"raw_affiliation_string":"Fred Hutchinson Cancer Research Center, Seattle, WA 2 \u00a0 2 \u00a0 \u00a0 98109, USA","institution_ids":["https://openalex.org/I4210089486"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5109208118","display_name":"Martin McIntosh","orcid":null},"institutions":[{"id":"https://openalex.org/I4210089486","display_name":"Fred Hutch Cancer Center","ror":"https://ror.org/007ps6h72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210089486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Martin McIntosh","raw_affiliation_strings":["Fred Hutchinson Cancer Research Center, Seattle, WA 2 \u00a0 2 \u00a0 \u00a0 98109, USA"],"affiliations":[{"raw_affiliation_string":"Fred Hutchinson Cancer Research Center, Seattle, WA 2 \u00a0 2 \u00a0 \u00a0 98109, USA","institution_ids":["https://openalex.org/I4210089486"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":15,"corresponding_author_ids":["https://openalex.org/A5057877402"],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":15.8831,"has_fulltext":true,"cited_by_count":268,"citation_normalized_percentile":{"value":0.99657662,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"22","issue":"15","first_page":"1902","last_page":"1909"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/software-suite","display_name":"Software suite","score":0.75458824634552},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7427064776420593},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6665955781936646},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.615501880645752},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.5864536762237549},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5585339069366455},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5248337388038635},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.4786228537559509},{"id":"https://openalex.org/keywords/workbench","display_name":"Workbench","score":0.4656520485877991},{"id":"https://openalex.org/keywords/file-format","display_name":"File format","score":0.45135626196861267},{"id":"https://openalex.org/keywords/resolution","display_name":"Resolution (logic)","score":0.4109792709350586},{"id":"https://openalex.org/keywords/open-source-software","display_name":"Open source software","score":0.4108719229698181},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3665078282356262},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2265963852405548},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.20128881931304932}],"concepts":[{"id":"https://openalex.org/C2778736646","wikidata":"https://www.wikidata.org/wiki/Q1143070","display_name":"Software suite","level":3,"score":0.75458824634552},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7427064776420593},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6665955781936646},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.615501880645752},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.5864536762237549},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5585339069366455},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5248337388038635},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.4786228537559509},{"id":"https://openalex.org/C2779145975","wikidata":"https://www.wikidata.org/wiki/Q347690","display_name":"Workbench","level":3,"score":0.4656520485877991},{"id":"https://openalex.org/C97250363","wikidata":"https://www.wikidata.org/wiki/Q235557","display_name":"File format","level":2,"score":0.45135626196861267},{"id":"https://openalex.org/C138268822","wikidata":"https://www.wikidata.org/wiki/Q1051925","display_name":"Resolution (logic)","level":2,"score":0.4109792709350586},{"id":"https://openalex.org/C2988343187","wikidata":"https://www.wikidata.org/wiki/Q1130645","display_name":"Open source software","level":3,"score":0.4108719229698181},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3665078282356262},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2265963852405548},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.20128881931304932},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002853","descriptor_name":"Chromatography, Liquid","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002853","descriptor_name":"Chromatography, Liquid","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002853","descriptor_name":"Chromatography, Liquid","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010449","descriptor_name":"Peptide Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010449","descriptor_name":"Peptide Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010449","descriptor_name":"Peptide Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D045424","descriptor_name":"Complex Mixtures","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D045424","descriptor_name":"Complex Mixtures","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D045424","descriptor_name":"Complex Mixtures","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btl276","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl276","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/15/1902/48840036/bioinformatics_22_15_1902.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:16766559","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16766559","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btl276","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl276","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/15/1902/48840036/bioinformatics_22_15_1902.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4399999976158142,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"},{"score":0.4099999964237213,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2107231094.pdf","grobid_xml":"https://content.openalex.org/works/W2107231094.grobid-xml"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W179928990","https://openalex.org/W1582484699","https://openalex.org/W1607252236","https://openalex.org/W1729812787","https://openalex.org/W1965555277","https://openalex.org/W1996644428","https://openalex.org/W2000305974","https://openalex.org/W2019196704","https://openalex.org/W2028163014","https://openalex.org/W2037837681","https://openalex.org/W2084151531","https://openalex.org/W2105696555","https://openalex.org/W2109408008","https://openalex.org/W2111208057","https://openalex.org/W2114172236","https://openalex.org/W2114754207","https://openalex.org/W2115755118","https://openalex.org/W2126897927","https://openalex.org/W2130213158","https://openalex.org/W2134389439","https://openalex.org/W2135817903","https://openalex.org/W2137238178","https://openalex.org/W2146103026","https://openalex.org/W2519438632","https://openalex.org/W2999729612","https://openalex.org/W3014310718","https://openalex.org/W4243727804","https://openalex.org/W4249303080","https://openalex.org/W4298352105","https://openalex.org/W4298882835","https://openalex.org/W6649376304","https://openalex.org/W6676978593","https://openalex.org/W6679212166"],"related_works":["https://openalex.org/W2567010819","https://openalex.org/W2113128227","https://openalex.org/W1981336497","https://openalex.org/W2061990085","https://openalex.org/W3118682726","https://openalex.org/W2120301307","https://openalex.org/W2904462035","https://openalex.org/W4311938462","https://openalex.org/W2308359027","https://openalex.org/W2885293781"],"abstract_inverted_index":{"The":[0,11],"msInspect":[1],"software":[2,12],"is":[3],"distributed":[4],"freely":[5],"under":[6],"an":[7],"Apache":[8],"2.0":[9],"license.":[10],"as":[13,15],"well":[14],"a":[16],"Zip":[17],"file":[18],"with":[19],"all":[20],"peptide":[21],"feature":[22],"files":[23],"and":[24,31],"scripts":[25],"needed":[26],"to":[27],"generate":[28],"the":[29],"tables":[30],"figures":[32],"in":[33],"this":[34],"article":[35],"are":[36],"available":[37],"at":[38],"http://proteomics.fhcrc.org/.":[39]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":16},{"year":2014,"cited_by_count":20},{"year":2013,"cited_by_count":27},{"year":2012,"cited_by_count":16}],"updated_date":"2026-03-08T08:50:53.379069","created_date":"2025-10-10T00:00:00"}
