{"id":"https://openalex.org/W2048796447","doi":"https://doi.org/10.1093/bioinformatics/btl043","title":"Comparison of <i>P-RnaPredict</i> and <i>mfold</i>\u2014algorithms for RNA secondary structure prediction","display_name":"Comparison of <i>P-RnaPredict</i> and <i>mfold</i>\u2014algorithms for RNA secondary structure prediction","publication_year":2006,"publication_date":"2006-02-10","ids":{"openalex":"https://openalex.org/W2048796447","doi":"https://doi.org/10.1093/bioinformatics/btl043","mag":"2048796447","pmid":"https://pubmed.ncbi.nlm.nih.gov/16473869"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btl043","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl043","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/8/934/48840382/bioinformatics_22_8_934.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/22/8/934/48840382/bioinformatics_22_8_934.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049270004","display_name":"Kay C. Wiese","orcid":"https://orcid.org/0000-0003-4507-1892"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Kay C. Wiese","raw_affiliation_strings":["School of Computing Science and InfoNet Media Centre, Simon Fraser University \u00a0 15th Floor, Central City Tower, 13450 102nd Avenue, Surrey, BC, Canada V3T 5X3","School of Computing Science and InfoNet Media Centre, Simon Fraser University 15th Floor, Central City Tower, 13450 102nd Avenue, Surrey, BC, Canada V3T 5X3#TAB#"],"affiliations":[{"raw_affiliation_string":"School of Computing Science and InfoNet Media Centre, Simon Fraser University \u00a0 15th Floor, Central City Tower, 13450 102nd Avenue, Surrey, BC, Canada V3T 5X3","institution_ids":["https://openalex.org/I18014758"]},{"raw_affiliation_string":"School of Computing Science and InfoNet Media Centre, Simon Fraser University 15th Floor, Central City Tower, 13450 102nd Avenue, Surrey, BC, Canada V3T 5X3#TAB#","institution_ids":["https://openalex.org/I18014758"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051043145","display_name":"A. Hendriks","orcid":null},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Andrew Hendriks","raw_affiliation_strings":["School of Computing Science and InfoNet Media Centre, Simon Fraser University \u00a0 15th Floor, Central City Tower, 13450 102nd Avenue, Surrey, BC, Canada V3T 5X3","School of Computing Science and InfoNet Media Centre, Simon Fraser University 15th Floor, Central City Tower, 13450 102nd Avenue, Surrey, BC, Canada V3T 5X3#TAB#"],"affiliations":[{"raw_affiliation_string":"School of Computing Science and InfoNet Media Centre, Simon Fraser University \u00a0 15th Floor, Central City Tower, 13450 102nd Avenue, Surrey, BC, Canada V3T 5X3","institution_ids":["https://openalex.org/I18014758"]},{"raw_affiliation_string":"School of Computing Science and InfoNet Media Centre, Simon Fraser University 15th Floor, Central City Tower, 13450 102nd Avenue, Surrey, BC, Canada V3T 5X3#TAB#","institution_ids":["https://openalex.org/I18014758"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5049270004"],"corresponding_institution_ids":["https://openalex.org/I18014758"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":3.4055,"has_fulltext":false,"cited_by_count":55,"citation_normalized_percentile":{"value":0.92471799,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"22","issue":"8","first_page":"934","last_page":"942"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9782999753952026,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.5417994856834412},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5296869874000549},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4948548674583435},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.327711820602417},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15326568484306335},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09676027297973633},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.05416971445083618}],"concepts":[{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5417994856834412},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5296869874000549},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4948548674583435},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.327711820602417},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15326568484306335},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09676027297973633},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.05416971445083618}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btl043","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl043","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/8/934/48840382/bioinformatics_22_8_934.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:16473869","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16473869","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btl043","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl043","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/8/934/48840382/bioinformatics_22_8_934.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2165548363","display_name":null,"funder_award_id":"Canada","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G8284766523","display_name":null,"funder_award_id":"(NSERC)","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"}],"funders":[{"id":"https://openalex.org/F4320322551","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2048796447.pdf","grobid_xml":"https://content.openalex.org/works/W2048796447.grobid-xml"},"referenced_works_count":66,"referenced_works":["https://openalex.org/W17748033","https://openalex.org/W99032621","https://openalex.org/W113288072","https://openalex.org/W119114865","https://openalex.org/W165213868","https://openalex.org/W337967372","https://openalex.org/W1495011002","https://openalex.org/W1497256448","https://openalex.org/W1501816594","https://openalex.org/W1514875444","https://openalex.org/W1519185585","https://openalex.org/W1541691514","https://openalex.org/W1541914161","https://openalex.org/W1559956479","https://openalex.org/W1574643310","https://openalex.org/W1576818901","https://openalex.org/W1585306636","https://openalex.org/W1859892029","https://openalex.org/W1945034450","https://openalex.org/W2002164298","https://openalex.org/W2007799540","https://openalex.org/W2009818318","https://openalex.org/W2017313617","https://openalex.org/W2024734101","https://openalex.org/W2025763720","https://openalex.org/W2036456126","https://openalex.org/W2039509053","https://openalex.org/W2040015982","https://openalex.org/W2051713039","https://openalex.org/W2054931730","https://openalex.org/W2057989705","https://openalex.org/W2064580019","https://openalex.org/W2067822099","https://openalex.org/W2075702353","https://openalex.org/W2091735434","https://openalex.org/W2096718668","https://openalex.org/W2107432340","https://openalex.org/W2123575095","https://openalex.org/W2133173643","https://openalex.org/W2139138332","https://openalex.org/W2141157874","https://openalex.org/W2142056356","https://openalex.org/W2151084831","https://openalex.org/W2155544170","https://openalex.org/W2164943294","https://openalex.org/W2166843422","https://openalex.org/W2171909013","https://openalex.org/W2278794844","https://openalex.org/W2415556764","https://openalex.org/W2481777865","https://openalex.org/W2502569966","https://openalex.org/W2913091258","https://openalex.org/W3149025087","https://openalex.org/W4285719527","https://openalex.org/W6600690991","https://openalex.org/W6604038483","https://openalex.org/W6604818702","https://openalex.org/W6629689861","https://openalex.org/W6630263271","https://openalex.org/W6632371923","https://openalex.org/W6652830724","https://openalex.org/W6681001129","https://openalex.org/W6684084814","https://openalex.org/W6684802410","https://openalex.org/W6694609041","https://openalex.org/W6721998264"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2051487156","https://openalex.org/W2073681303","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829"],"abstract_inverted_index":{"P-RnaPredict":[0],"is":[1],"available":[2],"for":[3],"non-commercial":[4],"usage.":[5],"Interested":[6],"parties":[7],"should":[8],"contact":[9],"Kay":[10],"C.":[11],"Wiese":[12],"(wiese@cs.sfu.ca).":[13]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2016-06-24T00:00:00"}
