{"id":"https://openalex.org/W2088327421","doi":"https://doi.org/10.1093/bioinformatics/bti821","title":"PubMed Assistant: a biologist-friendly interface for enhanced PubMed search","display_name":"PubMed Assistant: a biologist-friendly interface for enhanced PubMed search","publication_year":2005,"publication_date":"2005-12-06","ids":{"openalex":"https://openalex.org/W2088327421","doi":"https://doi.org/10.1093/bioinformatics/bti821","mag":"2088327421","pmid":"https://pubmed.ncbi.nlm.nih.gov/16332704"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bti821","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti821","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/3/378/48838869/bioinformatics_22_3_378.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/22/3/378/48838869/bioinformatics_22_3_378.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101503403","display_name":"Jing Ding","orcid":"https://orcid.org/0000-0002-5893-4207"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jing Ding","raw_affiliation_strings":["Department of Electrical and Computer Engineering 1 \u00a0 1 \u00a0 \u00a0 Iowa State University, Ames, IA 50011, USA"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering 1 \u00a0 1 \u00a0 \u00a0 Iowa State University, Ames, IA 50011, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110267358","display_name":"L. M. Hughes","orcid":null},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"LaRon M. Hughes","raw_affiliation_strings":["Department of Electrical and Computer Engineering 1 \u00a0 1 \u00a0 \u00a0 Iowa State University, Ames, IA 50011, USA"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering 1 \u00a0 1 \u00a0 \u00a0 Iowa State University, Ames, IA 50011, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108822086","display_name":"Daniel Berleant","orcid":null},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel Berleant","raw_affiliation_strings":["Department of Electrical and Computer Engineering 1 \u00a0 1 \u00a0 \u00a0 Iowa State University, Ames, IA 50011, USA"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering 1 \u00a0 1 \u00a0 \u00a0 Iowa State University, Ames, IA 50011, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111910467","display_name":"Andy Fulmer","orcid":null},"institutions":[{"id":"https://openalex.org/I74680897","display_name":"Procter & Gamble (United States)","ror":"https://ror.org/04dkns738","country_code":"US","type":"company","lineage":["https://openalex.org/I74680897"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andy W. Fulmer","raw_affiliation_strings":["The Procter and Gamble Company 3 \u00a0 3 \u00a0 \u00a0 Cincinnati, OH 45252, USA"],"affiliations":[{"raw_affiliation_string":"The Procter and Gamble Company 3 \u00a0 3 \u00a0 \u00a0 Cincinnati, OH 45252, USA","institution_ids":["https://openalex.org/I74680897"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054812749","display_name":"Eve Syrkin Wurtele","orcid":"https://orcid.org/0000-0003-1552-9495"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eve Syrkin Wurtele","raw_affiliation_strings":["Department of Genetics, Development and Cell Biology 2 \u00a0 2 \u00a0 \u00a0 Iowa State University, Ames, IA 50011, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Development and Cell Biology 2 \u00a0 2 \u00a0 \u00a0 Iowa State University, Ames, IA 50011, USA","institution_ids":["https://openalex.org/I173911158"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5101503403"],"corresponding_institution_ids":["https://openalex.org/I173911158"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.0127,"has_fulltext":false,"cited_by_count":18,"citation_normalized_percentile":{"value":0.74258681,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":"22","issue":"3","first_page":"378","last_page":"380"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9803000092506409,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9803000092506409,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11744","display_name":"Health Sciences Research and Education","score":0.9606999754905701,"subfield":{"id":"https://openalex.org/subfields/3600","display_name":"General Health Professions"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9222999811172485,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8336491584777832},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.6351486444473267},{"id":"https://openalex.org/keywords/license","display_name":"License","score":0.6334921717643738},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5060939192771912},{"id":"https://openalex.org/keywords/medline","display_name":"MEDLINE","score":0.4512580335140228},{"id":"https://openalex.org/keywords/citation","display_name":"Citation","score":0.4459609389305115},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4458520710468292},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.42657002806663513},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2584056854248047}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8336491584777832},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.6351486444473267},{"id":"https://openalex.org/C2780560020","wikidata":"https://www.wikidata.org/wiki/Q79719","display_name":"License","level":2,"score":0.6334921717643738},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5060939192771912},{"id":"https://openalex.org/C2779473830","wikidata":"https://www.wikidata.org/wiki/Q1540899","display_name":"MEDLINE","level":2,"score":0.4512580335140228},{"id":"https://openalex.org/C2778805511","wikidata":"https://www.wikidata.org/wiki/Q1713","display_name":"Citation","level":2,"score":0.4459609389305115},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4458520710468292},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.42657002806663513},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2584056854248047},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001695","descriptor_name":"Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001695","descriptor_name":"Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001695","descriptor_name":"Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bti821","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti821","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/3/378/48838869/bioinformatics_22_3_378.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:16332704","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16332704","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.97.6486","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.97.6486","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/cgi/reprint/bti821v1.pdf","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bti821","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti821","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/3/378/48838869/bioinformatics_22_3_378.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2088327421.pdf","grobid_xml":"https://content.openalex.org/works/W2088327421.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2606446052","https://openalex.org/W2036021480","https://openalex.org/W3195777957","https://openalex.org/W2382668227","https://openalex.org/W2348482143","https://openalex.org/W2024584030","https://openalex.org/W2137048368","https://openalex.org/W1603675680","https://openalex.org/W1983668675","https://openalex.org/W3204065390"],"abstract_inverted_index":{"MEDLINE":[0],"is":[1,29],"one":[2],"of":[3,35,40],"the":[4,38,79],"most":[5],"important":[6],"bibliographical":[7],"information":[8,77],"sources":[9],"for":[10],"biologists":[11],"and":[12,25,43,81,98],"medical":[13],"workers.":[14],"Its":[15],"PubMed":[16,28,46,59,69],"interface":[17,73],"supports":[18],"Boolean":[19,52],"queries,":[20],"which":[21],"are":[22,101],"potentially":[23],"expressive":[24],"exact.":[26],"However,":[27],"also":[30],"designed":[31],"to":[32,61,90,95],"support":[33],"simplicity":[34],"use":[36],"at":[37],"expense":[39],"query":[41],"expressiveness":[42],"exactness.":[44],"Many":[45],"users":[47],"have":[48],"never":[49],"tried":[50],"explicit":[51],"queries.":[53],"We":[54],"developed":[55],"a":[56],"Java":[57],"program,":[58],"Assistant,":[60],"make":[62],"literature":[63],"access":[64],"easier":[65],"in":[66,103],"several":[67],"ways.":[68],"Assistant":[70],"provides":[71],"an":[72],"that":[74,100],"efficiently":[75],"displays":[76],"about":[78],"citations":[80],"includes":[82],"useful":[83],"functions":[84],"such":[85],"as":[86],"keyword":[87],"highlighting,":[88],"export":[89],"citation":[91],"managers,":[92],"clickable":[93],"links":[94],"Google":[96],"Scholar":[97],"others":[99],"lacking":[102],"PubMed.":[104]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
