{"id":"https://openalex.org/W2170245058","doi":"https://doi.org/10.1093/bioinformatics/bti560","title":"TO-GO: a Java-based Gene Ontology navigation environment","display_name":"TO-GO: a Java-based Gene Ontology navigation environment","publication_year":2005,"publication_date":"2005-06-30","ids":{"openalex":"https://openalex.org/W2170245058","doi":"https://doi.org/10.1093/bioinformatics/bti560","mag":"2170245058","pmid":"https://pubmed.ncbi.nlm.nih.gov/15994194"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bti560","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti560","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/17/3580/48981095/bioinformatics_21_17_3580.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/21/17/3580/48981095/bioinformatics_21_17_3580.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011462843","display_name":"Ung-Sik Yu","orcid":null},"institutions":[{"id":"https://openalex.org/I73616290","display_name":"Korea Research Institute of Bioscience and Biotechnology","ror":"https://ror.org/03ep23f07","country_code":"KR","type":"facility","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I73616290"]},{"id":"https://openalex.org/I171717699","display_name":"Genome Research Foundation","ror":"https://ror.org/03khjyh83","country_code":"KR","type":"nonprofit","lineage":["https://openalex.org/I171717699"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"U. Yu","raw_affiliation_strings":["National Genome Information Center, KRIBB, Oun 52, Yusong, Daejeon 305-333, Korea. ungsik@kribb.re.kr","National Genome Information Center, KRIBB, Oun 52, Yusong, Daejeon 305-333, Korea and"],"affiliations":[{"raw_affiliation_string":"National Genome Information Center, KRIBB, Oun 52, Yusong, Daejeon 305-333, Korea. ungsik@kribb.re.kr","institution_ids":["https://openalex.org/I171717699"]},{"raw_affiliation_string":"National Genome Information Center, KRIBB, Oun 52, Yusong, Daejeon 305-333, Korea and","institution_ids":["https://openalex.org/I171717699","https://openalex.org/I73616290"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035528550","display_name":"Youn-Seok Choi","orcid":"https://orcid.org/0000-0003-4439-0357"},"institutions":[{"id":"https://openalex.org/I171717699","display_name":"Genome Research Foundation","ror":"https://ror.org/03khjyh83","country_code":"KR","type":"nonprofit","lineage":["https://openalex.org/I171717699"]},{"id":"https://openalex.org/I73616290","display_name":"Korea Research Institute of Bioscience and Biotechnology","ror":"https://ror.org/03ep23f07","country_code":"KR","type":"facility","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I73616290"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Y. J. Choi","raw_affiliation_strings":["National Genome Information Center, KRIBB, Oun 52, Yusong, Daejeon 305-333, Korea and"],"affiliations":[{"raw_affiliation_string":"National Genome Information Center, KRIBB, Oun 52, Yusong, Daejeon 305-333, Korea and","institution_ids":["https://openalex.org/I171717699","https://openalex.org/I73616290"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102066354","display_name":"Jiwon Choi","orcid":"https://orcid.org/0009-0008-5664-3415"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"J. K. Choi","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5100739938","display_name":"Sujeong Kim","orcid":"https://orcid.org/0000-0002-2494-9216"},"institutions":[{"id":"https://openalex.org/I141371507","display_name":"Soongsil University","ror":"https://ror.org/017xnm587","country_code":"KR","type":"education","lineage":["https://openalex.org/I141371507"]},{"id":"https://openalex.org/I73616290","display_name":"Korea Research Institute of Bioscience and Biotechnology","ror":"https://ror.org/03ep23f07","country_code":"KR","type":"facility","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I73616290"]},{"id":"https://openalex.org/I171717699","display_name":"Genome Research Foundation","ror":"https://ror.org/03khjyh83","country_code":"KR","type":"nonprofit","lineage":["https://openalex.org/I171717699"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"S. Kim","raw_affiliation_strings":["Department of Bioinformatics and Life Science, Soongsil University, Seoul, Korea","National Genome Information Center, KRIBB, Oun 52, Yusong, Daejeon 305-333, Korea and"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Life Science, Soongsil University, Seoul, Korea","institution_ids":["https://openalex.org/I141371507"]},{"raw_affiliation_string":"National Genome Information Center, KRIBB, Oun 52, Yusong, Daejeon 305-333, Korea and","institution_ids":["https://openalex.org/I171717699","https://openalex.org/I73616290"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5011462843"],"corresponding_institution_ids":["https://openalex.org/I171717699","https://openalex.org/I73616290"],"apc_list":null,"apc_paid":null,"fwci":0.126,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.51653911,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"21","issue":"17","first_page":"3580","last_page":"3581"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.8331310749053955},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6885316371917725},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.5911413431167603},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5826466679573059},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.4450673758983612},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.35762470960617065},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19745972752571106},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19085916876792908}],"concepts":[{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.8331310749053955},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6885316371917725},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.5911413431167603},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5826466679573059},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.4450673758983612},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.35762470960617065},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19745972752571106},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19085916876792908},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bti560","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti560","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/17/3580/48981095/bioinformatics_21_17_3580.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15994194","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15994194","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:http://repository.kribb.re.kr:8080/:201005/7058","is_oa":false,"landing_page_url":"http://doi.org/10.1093/bioinformatics/bti560","pdf_url":null,"source":{"id":"https://openalex.org/S4406922719","display_name":"KRIBB Repository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"/dspace/upload/original/6012.pdf","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bti560","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti560","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/17/3580/48981095/bioinformatics_21_17_3580.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.41999998688697815,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2170245058.pdf","grobid_xml":"https://content.openalex.org/works/W2170245058.grobid-xml"},"referenced_works_count":4,"referenced_works":["https://openalex.org/W1998902445","https://openalex.org/W2100831836","https://openalex.org/W2103017472","https://openalex.org/W2159203162"],"related_works":["https://openalex.org/W2749690376","https://openalex.org/W2003333417","https://openalex.org/W2786317006","https://openalex.org/W4367724653","https://openalex.org/W2788563018","https://openalex.org/W2997587123","https://openalex.org/W2378862226","https://openalex.org/W4281673905","https://openalex.org/W118236634","https://openalex.org/W2794341036"],"abstract_inverted_index":{"ungsik@kribb.re.kr":[0]},"counts_by_year":[{"year":2019,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
