{"id":"https://openalex.org/W2149628296","doi":"https://doi.org/10.1093/bioinformatics/bti535","title":"Efficient sorting of genomic permutations by translocation, inversion and block interchange","display_name":"Efficient sorting of genomic permutations by translocation, inversion and block interchange","publication_year":2005,"publication_date":"2005-06-09","ids":{"openalex":"https://openalex.org/W2149628296","doi":"https://doi.org/10.1093/bioinformatics/bti535","mag":"2149628296"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bti535","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti535","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/16/3340/571439/bti535.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/21/16/3340/571439/bti535.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062588045","display_name":"Sophia Yancopoulos","orcid":null},"institutions":[{"id":"https://openalex.org/I1302444339","display_name":"Northwell Health","ror":"https://ror.org/02bxt4m23","country_code":"US","type":"funder","lineage":["https://openalex.org/I1302444339"]},{"id":"https://openalex.org/I1327576362","display_name":"Feinstein Institute for Medical Research","ror":"https://ror.org/05dnene97","country_code":"US","type":"facility","lineage":["https://openalex.org/I1302444339","https://openalex.org/I1327576362"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"S. Yancopoulos","raw_affiliation_strings":["The Feinstein Institute for Medical Research, North Shore-LIJ Health System, Manhasset, NY 11030, USA,"],"affiliations":[{"raw_affiliation_string":"The Feinstein Institute for Medical Research, North Shore-LIJ Health System, Manhasset, NY 11030, USA,","institution_ids":["https://openalex.org/I1327576362","https://openalex.org/I1302444339"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002373580","display_name":"Oliver Attie","orcid":"https://orcid.org/0000-0003-0618-5571"},"institutions":[{"id":"https://openalex.org/I39694355","display_name":"Hunter College","ror":"https://ror.org/00g2xk477","country_code":"US","type":"education","lineage":["https://openalex.org/I39694355"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"O. Attie","raw_affiliation_strings":["Center for the Study of Gene Structure and Function, Hunter College, NY, NY 10021, USA and"],"affiliations":[{"raw_affiliation_string":"Center for the Study of Gene Structure and Function, Hunter College, NY, NY 10021, USA and","institution_ids":["https://openalex.org/I39694355"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044560788","display_name":"R. Friedberg","orcid":"https://orcid.org/0000-0002-4507-6928"},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"R. Friedberg","raw_affiliation_strings":["Department of Physics, Columbia University, NY, NY 10027, USA"],"affiliations":[{"raw_affiliation_string":"Department of Physics, Columbia University, NY, NY 10027, USA","institution_ids":["https://openalex.org/I78577930"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5062588045"],"corresponding_institution_ids":["https://openalex.org/I1302444339","https://openalex.org/I1327576362"],"apc_list":null,"apc_paid":null,"fwci":12.0519,"has_fulltext":true,"cited_by_count":498,"citation_normalized_percentile":{"value":0.99017037,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"21","issue":"16","first_page":"3340","last_page":"3346"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9866999983787537,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transposition","display_name":"Transposition (logic)","score":0.6198756098747253},{"id":"https://openalex.org/keywords/breakpoint","display_name":"Breakpoint","score":0.5966364741325378},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5622774362564087},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.47156497836112976},{"id":"https://openalex.org/keywords/chromosome","display_name":"Chromosome","score":0.4706033170223236},{"id":"https://openalex.org/keywords/sorting","display_name":"Sorting","score":0.45249176025390625},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.43424737453460693},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.43169859051704407},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.41854211688041687},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.39525386691093445},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3087199926376343},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2919934093952179},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1806921362876892}],"concepts":[{"id":"https://openalex.org/C12455157","wikidata":"https://www.wikidata.org/wiki/Q7835331","display_name":"Transposition (logic)","level":2,"score":0.6198756098747253},{"id":"https://openalex.org/C206936463","wikidata":"https://www.wikidata.org/wiki/Q634179","display_name":"Breakpoint","level":4,"score":0.5966364741325378},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5622774362564087},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.47156497836112976},{"id":"https://openalex.org/C30481170","wikidata":"https://www.wikidata.org/wiki/Q37748","display_name":"Chromosome","level":3,"score":0.4706033170223236},{"id":"https://openalex.org/C111696304","wikidata":"https://www.wikidata.org/wiki/Q2303697","display_name":"Sorting","level":2,"score":0.45249176025390625},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.43424737453460693},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.43169859051704407},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.41854211688041687},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.39525386691093445},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3087199926376343},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2919934093952179},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1806921362876892},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1093/bioinformatics/bti535","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti535","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/16/3340/571439/bti535.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bti535","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti535","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/16/3340/571439/bti535.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2149628296.pdf","grobid_xml":"https://content.openalex.org/works/W2149628296.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W1785544","https://openalex.org/W49579657","https://openalex.org/W1194821837","https://openalex.org/W1553134725","https://openalex.org/W1557841343","https://openalex.org/W1958274537","https://openalex.org/W1966872307","https://openalex.org/W1969186620","https://openalex.org/W1975922463","https://openalex.org/W1980890118","https://openalex.org/W1989978323","https://openalex.org/W1993361911","https://openalex.org/W2001994573","https://openalex.org/W2004163905","https://openalex.org/W2023749136","https://openalex.org/W2025268107","https://openalex.org/W2068426944","https://openalex.org/W2070449673","https://openalex.org/W2093198858","https://openalex.org/W2093342565","https://openalex.org/W2100734112","https://openalex.org/W2113035810","https://openalex.org/W2119742790","https://openalex.org/W2122598328","https://openalex.org/W2130849966","https://openalex.org/W2145803764","https://openalex.org/W2159516494","https://openalex.org/W2161959030"],"related_works":["https://openalex.org/W2036289360","https://openalex.org/W2003824598","https://openalex.org/W2606481030","https://openalex.org/W2987034282","https://openalex.org/W1979375946","https://openalex.org/W2321977289","https://openalex.org/W2102889349","https://openalex.org/W2117117412","https://openalex.org/W2067409815","https://openalex.org/W2034155503"],"abstract_inverted_index":{"Motivation:":[0],"Finding":[1],"genomic":[2,19,58],"distance":[3,59],"based":[4,21],"on":[5,22],"gene":[6],"order":[7],"is":[8],"a":[9,43,47,56],"classic":[10],"problem":[11],"in":[12,36],"genome":[13],"rearrangements.":[14],"Efficient":[15],"exact":[16],"algorithms":[17],"for":[18],"distances":[20],"inversions":[23],"and/or":[24],"translocations":[25],"have":[26],"been":[27],"found":[28],"but":[29],"are":[30],"complicated":[31],"by":[32],"special":[33],"cases,":[34],"rare":[35],"simulations":[37],"and":[38,54],"empirical":[39],"data.":[40],"We":[41],"seek":[42],"universal":[44],"operation":[45],"underlying":[46],"more":[48],"inclusive":[49],"set":[50],"of":[51],"evolutionary":[52],"operations":[53],"yielding":[55],"tractable":[57],"with":[60],"simple":[61],"mathematical":[62],"form.":[63]},"counts_by_year":[{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":23},{"year":2023,"cited_by_count":26},{"year":2022,"cited_by_count":16},{"year":2021,"cited_by_count":21},{"year":2020,"cited_by_count":22},{"year":2019,"cited_by_count":23},{"year":2018,"cited_by_count":22},{"year":2017,"cited_by_count":31},{"year":2016,"cited_by_count":30},{"year":2015,"cited_by_count":21},{"year":2014,"cited_by_count":29},{"year":2013,"cited_by_count":28},{"year":2012,"cited_by_count":29}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2016-06-24T00:00:00"}