{"id":"https://openalex.org/W1967115261","doi":"https://doi.org/10.1093/bioinformatics/bti246","title":"AGML Central: web based gel proteomic infrastructure","display_name":"AGML Central: web based gel proteomic infrastructure","publication_year":2005,"publication_date":"2005-01-12","ids":{"openalex":"https://openalex.org/W1967115261","doi":"https://doi.org/10.1093/bioinformatics/bti246","mag":"1967115261"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bti246","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti246","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/9/1754/48972498/bioinformatics_21_9_1754.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/21/9/1754/48972498/bioinformatics_21_9_1754.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056565633","display_name":"Romesh Stanislaus","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"R. Stanislaus","raw_affiliation_strings":["Department of Biostatistics, Bioinformatics and Epidemiology,","Department of Biostatistics, Bioinformatics and Epidemiology 135 Cannon Street, Suite 303, P.O. Box 250835, Charleston, SC 29425, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Biostatistics, Bioinformatics and Epidemiology,","institution_ids":[]},{"raw_affiliation_string":"Department of Biostatistics, Bioinformatics and Epidemiology 135 Cannon Street, Suite 303, P.O. Box 250835, Charleston, SC 29425, USA#TAB#","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004336328","display_name":"Chuming Chen","orcid":"https://orcid.org/0000-0002-7287-9013"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"C. Chen","raw_affiliation_strings":["Department of Biostatistics, Bioinformatics and Epidemiology,","Department of Biostatistics, Bioinformatics and Epidemiology 135 Cannon Street, Suite 303, P.O. Box 250835, Charleston, SC 29425, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Biostatistics, Bioinformatics and Epidemiology,","institution_ids":[]},{"raw_affiliation_string":"Department of Biostatistics, Bioinformatics and Epidemiology 135 Cannon Street, Suite 303, P.O. Box 250835, Charleston, SC 29425, USA#TAB#","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027366841","display_name":"Jennifer Franklin","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"J. Franklin","raw_affiliation_strings":["Department of Biostatistics, Bioinformatics and Epidemiology,","Department of Biostatistics, Bioinformatics and Epidemiology 135 Cannon Street, Suite 303, P.O. Box 250835, Charleston, SC 29425, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Biostatistics, Bioinformatics and Epidemiology,","institution_ids":[]},{"raw_affiliation_string":"Department of Biostatistics, Bioinformatics and Epidemiology 135 Cannon Street, Suite 303, P.O. Box 250835, Charleston, SC 29425, USA#TAB#","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025064016","display_name":"John M. Arthur","orcid":"https://orcid.org/0000-0003-4342-4762"},"institutions":[{"id":"https://openalex.org/I153297377","display_name":"Medical University of South Carolina","ror":"https://ror.org/012jban78","country_code":"US","type":"education","lineage":["https://openalex.org/I153297377"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. Arthur","raw_affiliation_strings":["Division of Nephrology, Department of Medicine, Medical University of South Carolina, 135 Cannon Street, Suite 303, P.O. Box 250835, Charleston, SC 29425, USA","Division of Nephrology, Department of Medicine, Medical University of South Carolina 135 Cannon Street, Suite 303, P.O. Box 250835, Charleston, SC 29425, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"Division of Nephrology, Department of Medicine, Medical University of South Carolina, 135 Cannon Street, Suite 303, P.O. Box 250835, Charleston, SC 29425, USA","institution_ids":["https://openalex.org/I153297377"]},{"raw_affiliation_string":"Division of Nephrology, Department of Medicine, Medical University of South Carolina 135 Cannon Street, Suite 303, P.O. Box 250835, Charleston, SC 29425, USA#TAB#","institution_ids":["https://openalex.org/I153297377"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103441563","display_name":"Jonas S. Almeida","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"J. S. Almeida","raw_affiliation_strings":["Department of Biostatistics, Bioinformatics and Epidemiology,","Department of Biostatistics, Bioinformatics and Epidemiology 135 Cannon Street, Suite 303, P.O. Box 250835, Charleston, SC 29425, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Biostatistics, Bioinformatics and Epidemiology,","institution_ids":[]},{"raw_affiliation_string":"Department of Biostatistics, Bioinformatics and Epidemiology 135 Cannon Street, Suite 303, P.O. Box 250835, Charleston, SC 29425, USA#TAB#","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5056565633"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":2.4047,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.88071755,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"21","issue":"9","first_page":"1754","last_page":"1757"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9883999824523926,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9592999815940857,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/java-applet","display_name":"Java applet","score":0.6916271448135376},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6698797941207886},{"id":"https://openalex.org/keywords/markup-language","display_name":"Markup language","score":0.5660337209701538},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.47155165672302246},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.46285808086395264},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.38313743472099304},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.22520986199378967},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.20724308490753174}],"concepts":[{"id":"https://openalex.org/C15524039","wikidata":"https://www.wikidata.org/wiki/Q865817","display_name":"Java applet","level":3,"score":0.6916271448135376},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6698797941207886},{"id":"https://openalex.org/C45874996","wikidata":"https://www.wikidata.org/wiki/Q37045","display_name":"Markup language","level":3,"score":0.5660337209701538},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.47155165672302246},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.46285808086395264},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.38313743472099304},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.22520986199378967},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.20724308490753174}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1093/bioinformatics/bti246","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti246","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/9/1754/48972498/bioinformatics_21_9_1754.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bti246","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti246","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/9/1754/48972498/bioinformatics_21_9_1754.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.6399999856948853}],"awards":[{"id":"https://openalex.org/G4388583276","display_name":null,"funder_award_id":"N01-HV-28181","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"}],"funders":[{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1967115261.pdf","grobid_xml":"https://content.openalex.org/works/W1967115261.grobid-xml"},"referenced_works_count":7,"referenced_works":["https://openalex.org/W2024935921","https://openalex.org/W2055471843","https://openalex.org/W2070681682","https://openalex.org/W2111006345","https://openalex.org/W2117693378","https://openalex.org/W2121387541","https://openalex.org/W2138648168"],"related_works":["https://openalex.org/W2344780600","https://openalex.org/W2948473269","https://openalex.org/W2473435377","https://openalex.org/W2096381758","https://openalex.org/W2028753068","https://openalex.org/W650470976","https://openalex.org/W626257650","https://openalex.org/W2914459301","https://openalex.org/W4242879402","https://openalex.org/W2494325768"],"abstract_inverted_index":{"AGML":[0,18,52,71,98,136,156],"Central":[1,72,157],"is":[2,62,118,151],"a":[3,26,66,77,147],"web-based":[4],"open-source":[5],"public":[6,101],"infrastructure":[7],"for":[8,68,80,99,109],"dissemination":[9,82],"of":[10,29,85,97],"two-dimensional":[11],"Gel":[12,21],"Electrophoresis":[13],"(2-DE)":[14],"proteomics":[15],"data":[16,81,87,103,137],"in":[17,65,154],"format":[19],"(Annotated":[20],"Markup":[22],"Language).":[23],"It":[24],"includes":[25],"growing":[27],"collection":[28],"converters":[30],"from":[31,111],"proprietary":[32,112],"formats":[33],"such":[34],"as":[35],"those":[36],"produced":[37],"by":[38],"PDQUEST":[39],"(BioRad),":[40],"PHORETIX":[41],"2-D":[42],"(Nonlinear":[43],"Dynamics)":[44],"and":[45,83,115],"Melanie":[46],"(GenBio":[47],"SA).":[48],"The":[49],"resulting":[50],"unifying":[51],"formatted":[53],"entry,":[54],"with":[55,138],"or":[56],"without":[57],"the":[58,135,155],"raw":[59],"gel":[60],"images,":[61],"optionally":[63],"stored":[64],"database":[67],"future":[69],"reference.":[70],"was":[73,131],"developed":[74,132],"to":[75,93,133,143],"provide":[76],"common":[78],"platform":[79],"development":[84],"2-DE":[86,100],"analysis":[88],"tools.":[89],"This":[90],"resource":[91],"responds":[92],"an":[94],"increasing":[95],"use":[96],"source":[102],"representation":[104],"which":[105],"requires":[106,124],"automated":[107,145],"tools":[108],"conversion":[110],"formats.":[113],"Conversion":[114],"short-term":[116],"storage":[117,123],"made":[119],"publicly":[120],"available,":[121],"permanent":[122],"prior":[125],"registering.":[126],"A":[127],"JAVA":[128],"applet":[129],"visualizer":[130],"visualize":[134],"cross-reference":[139],"links.":[140],"In":[141],"order":[142],"facilitate":[144],"access":[146],"SOAP":[148],"web":[149],"service":[150],"also":[152],"included":[153],"infrastructure.":[158]},"counts_by_year":[{"year":2019,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2016-06-24T00:00:00"}
