{"id":"https://openalex.org/W2108239673","doi":"https://doi.org/10.1093/bioinformatics/bti139","title":"SlidingBayes: exploring recombination using a sliding window approach based on Bayesian phylogenetic inference","display_name":"SlidingBayes: exploring recombination using a sliding window approach based on Bayesian phylogenetic inference","publication_year":2004,"publication_date":"2004-11-16","ids":{"openalex":"https://openalex.org/W2108239673","doi":"https://doi.org/10.1093/bioinformatics/bti139","mag":"2108239673","pmid":"https://pubmed.ncbi.nlm.nih.gov/15546940"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bti139","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti139","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/7/1274/749526/bti139.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/21/7/1274/749526/bti139.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088996103","display_name":"Dimitrios Paraskevis","orcid":"https://orcid.org/0000-0001-6167-7152"},"institutions":[{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]},{"id":"https://openalex.org/I24156275","display_name":"Rega Institute for Medical Research","ror":"https://ror.org/03w5j8p12","country_code":"BE","type":"facility","lineage":["https://openalex.org/I24156275"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"D. Paraskevis","raw_affiliation_strings":["Laboratory for Clinical and Epidemiological Virology, Rega Institute for Medical Research, Katholieke Universiteit Leuven, Minderbroedersstraat 10, B-3000 Leuven, Belgium. dparask@cc.uoa.gr","Laboratory for Clinical and Epidemiological Virology, Rega Institute for Medical Research, Katholieke Universiteit Leuven Minderbroedersstraat 10, B-3000 Leuven, Belgium#TAB#"],"affiliations":[{"raw_affiliation_string":"Laboratory for Clinical and Epidemiological Virology, Rega Institute for Medical Research, Katholieke Universiteit Leuven, Minderbroedersstraat 10, B-3000 Leuven, Belgium. dparask@cc.uoa.gr","institution_ids":["https://openalex.org/I24156275","https://openalex.org/I99464096"]},{"raw_affiliation_string":"Laboratory for Clinical and Epidemiological Virology, Rega Institute for Medical Research, Katholieke Universiteit Leuven Minderbroedersstraat 10, B-3000 Leuven, Belgium#TAB#","institution_ids":["https://openalex.org/I24156275"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081337249","display_name":"Koen Deforche","orcid":"https://orcid.org/0000-0003-3898-9494"},"institutions":[{"id":"https://openalex.org/I24156275","display_name":"Rega Institute for Medical Research","ror":"https://ror.org/03w5j8p12","country_code":"BE","type":"facility","lineage":["https://openalex.org/I24156275"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"K. Deforche","raw_affiliation_strings":["Laboratory for Clinical and Epidemiological Virology, Rega Institute for Medical Research, Katholieke Universiteit Leuven Minderbroedersstraat 10, B-3000 Leuven, Belgium#TAB#"],"affiliations":[{"raw_affiliation_string":"Laboratory for Clinical and Epidemiological Virology, Rega Institute for Medical Research, Katholieke Universiteit Leuven Minderbroedersstraat 10, B-3000 Leuven, Belgium#TAB#","institution_ids":["https://openalex.org/I24156275"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039280845","display_name":"Philippe Lemey","orcid":"https://orcid.org/0000-0003-2826-5353"},"institutions":[{"id":"https://openalex.org/I24156275","display_name":"Rega Institute for Medical Research","ror":"https://ror.org/03w5j8p12","country_code":"BE","type":"facility","lineage":["https://openalex.org/I24156275"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"P. Lemey","raw_affiliation_strings":["Laboratory for Clinical and Epidemiological Virology, Rega Institute for Medical Research, Katholieke Universiteit Leuven Minderbroedersstraat 10, B-3000 Leuven, Belgium#TAB#"],"affiliations":[{"raw_affiliation_string":"Laboratory for Clinical and Epidemiological Virology, Rega Institute for Medical Research, Katholieke Universiteit Leuven Minderbroedersstraat 10, B-3000 Leuven, Belgium#TAB#","institution_ids":["https://openalex.org/I24156275"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056419497","display_name":"Gkikas Magiorkinis","orcid":"https://orcid.org/0000-0002-0141-4753"},"institutions":[{"id":"https://openalex.org/I72702400","display_name":"Athens State University","ror":"https://ror.org/01zx16v02","country_code":"US","type":"education","lineage":["https://openalex.org/I72702400"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"G. Magiorkinis","raw_affiliation_strings":["National Retrovirus Reference Center, Department of Hygiene and Epidemiology, Athens University Medical School Mikras Asias 75, GR-11527, Athens, Greece#TAB#"],"affiliations":[{"raw_affiliation_string":"National Retrovirus Reference Center, Department of Hygiene and Epidemiology, Athens University Medical School Mikras Asias 75, GR-11527, Athens, Greece#TAB#","institution_ids":["https://openalex.org/I72702400"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043868687","display_name":"Angelos Hatzakis","orcid":"https://orcid.org/0000-0001-8420-3830"},"institutions":[{"id":"https://openalex.org/I72702400","display_name":"Athens State University","ror":"https://ror.org/01zx16v02","country_code":"US","type":"education","lineage":["https://openalex.org/I72702400"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. Hatzakis","raw_affiliation_strings":["National Retrovirus Reference Center, Department of Hygiene and Epidemiology, Athens University Medical School Mikras Asias 75, GR-11527, Athens, Greece#TAB#"],"affiliations":[{"raw_affiliation_string":"National Retrovirus Reference Center, Department of Hygiene and Epidemiology, Athens University Medical School Mikras Asias 75, GR-11527, Athens, Greece#TAB#","institution_ids":["https://openalex.org/I72702400"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5065034994","display_name":"Anne\u2013Mieke Vandamme","orcid":"https://orcid.org/0000-0002-6594-2766"},"institutions":[{"id":"https://openalex.org/I24156275","display_name":"Rega Institute for Medical Research","ror":"https://ror.org/03w5j8p12","country_code":"BE","type":"facility","lineage":["https://openalex.org/I24156275"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"A.-M. Vandamme","raw_affiliation_strings":["Laboratory for Clinical and Epidemiological Virology, Rega Institute for Medical Research, Katholieke Universiteit Leuven Minderbroedersstraat 10, B-3000 Leuven, Belgium#TAB#"],"affiliations":[{"raw_affiliation_string":"Laboratory for Clinical and Epidemiological Virology, Rega Institute for Medical Research, Katholieke Universiteit Leuven Minderbroedersstraat 10, B-3000 Leuven, Belgium#TAB#","institution_ids":["https://openalex.org/I24156275"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5088996103"],"corresponding_institution_ids":["https://openalex.org/I24156275","https://openalex.org/I99464096"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.0853,"has_fulltext":false,"cited_by_count":24,"citation_normalized_percentile":{"value":0.75198357,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"21","issue":"7","first_page":"1274","last_page":"1275"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9898999929428101,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9898999929428101,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9891999959945679,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10487","display_name":"Plant and animal studies","score":0.9873999953269958,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.7678548097610474},{"id":"https://openalex.org/keywords/window","display_name":"Window (computing)","score":0.6934192180633545},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.68522047996521},{"id":"https://openalex.org/keywords/sliding-window-protocol","display_name":"Sliding window protocol","score":0.6746779084205627},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.623110830783844},{"id":"https://openalex.org/keywords/bayesian-inference","display_name":"Bayesian inference","score":0.5798560976982117},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4941127598285675},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.43322986364364624},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.359951913356781},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.30150866508483887},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.18702712655067444},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07863795757293701},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.06138873100280762}],"concepts":[{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.7678548097610474},{"id":"https://openalex.org/C2778751112","wikidata":"https://www.wikidata.org/wiki/Q835016","display_name":"Window (computing)","level":2,"score":0.6934192180633545},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.68522047996521},{"id":"https://openalex.org/C102392041","wikidata":"https://www.wikidata.org/wiki/Q592860","display_name":"Sliding window protocol","level":3,"score":0.6746779084205627},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.623110830783844},{"id":"https://openalex.org/C160234255","wikidata":"https://www.wikidata.org/wiki/Q812535","display_name":"Bayesian inference","level":3,"score":0.5798560976982117},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4941127598285675},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.43322986364364624},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.359951913356781},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.30150866508483887},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18702712655067444},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07863795757293701},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.06138873100280762}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004279","descriptor_name":"DNA, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004279","descriptor_name":"DNA, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004279","descriptor_name":"DNA, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011995","descriptor_name":"Recombination, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011995","descriptor_name":"Recombination, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011995","descriptor_name":"Recombination, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bti139","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti139","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/7/1274/749526/bti139.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15546940","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15546940","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:ora.ox.ac.uk:uuid:ec48a578-9bd6-4802-8030-9f1d89569c74","is_oa":false,"landing_page_url":"https://ora.ox.ac.uk/objects/uuid:ec48a578-9bd6-4802-8030-9f1d89569c74","pdf_url":null,"source":{"id":"https://openalex.org/S4306402636","display_name":"Oxford University Research Archive (ORA) (University of Oxford)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I40120149","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/I40120149"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Symplectic Elements at Oxford","raw_type":"Journal article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bti139","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti139","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/7/1274/749526/bti139.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.49000000953674316,"id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321730","display_name":"Fonds Wetenschappelijk Onderzoek","ror":"https://ror.org/03qtxy027"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2108239673.pdf","grobid_xml":"https://content.openalex.org/works/W2108239673.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W1990096140","https://openalex.org/W2012560378","https://openalex.org/W2022296639","https://openalex.org/W2022767995","https://openalex.org/W2029353650","https://openalex.org/W2042007272","https://openalex.org/W2059513540","https://openalex.org/W2068233660","https://openalex.org/W2070324371","https://openalex.org/W2101876586","https://openalex.org/W2121865822","https://openalex.org/W2130582243","https://openalex.org/W2138866629","https://openalex.org/W2138930698","https://openalex.org/W2141913814","https://openalex.org/W2144427666","https://openalex.org/W2152886327","https://openalex.org/W2163400707","https://openalex.org/W4248841475"],"related_works":["https://openalex.org/W3014558862","https://openalex.org/W2407375987","https://openalex.org/W2505726097","https://openalex.org/W2950975704","https://openalex.org/W2010643158","https://openalex.org/W3049691116","https://openalex.org/W2106867672","https://openalex.org/W4310268968","https://openalex.org/W3081214562","https://openalex.org/W2053745677"],"abstract_inverted_index":{"We":[0],"developed":[1],"a":[2,16,56],"software":[3],"tool":[4,65],"(SlidingBayes)":[5],"for":[6,19,32,69,92],"recombination":[7],"analysis":[8],"based":[9],"on":[10],"Bayesian":[11],"phylogenetic":[12],"inference.":[13],"Sliding-Bayes":[14],"provides":[15],"powerful":[17],"approach":[18],"detecting":[20],"potential":[21],"recombination,":[22],"especially":[23],"between":[24],"highly":[25],"divergent":[26],"sequences":[27,74],"and":[28,71,75],"complex":[29],"HIV-1":[30],"recombinants":[31],"which":[33],"simpler":[34],"methods":[35],"like":[36],"neighbor":[37],"joining":[38],"(NJ)":[39],"may":[40],"be":[41,67],"less":[42],"powerful.":[43],"SlidingBayes":[44],"guides":[45],"Markov":[46],"Chain":[47],"Monte":[48],"Carlo":[49],"(MCMC)":[50],"sampling":[51],"performed":[52],"by":[53],"MrBayes":[54,82],"in":[55],"sliding":[57],"window":[58],"across":[59],"the":[60,78,84,88],"alignment":[61],"(Bayesian":[62],"scanning).":[63],"The":[64],"can":[66],"used":[68],"nucleotide":[70],"amino":[72],"acid":[73],"combines":[76],"all":[77],"modeling":[79],"possibilities":[80],"of":[81,94,97],"with":[83],"ability":[85],"to":[86],"plot":[87],"posterior":[89],"probability":[90],"support":[91],"clustering":[93],"various":[95],"combinations":[96],"taxa.":[98]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}