{"id":"https://openalex.org/W2098780184","doi":"https://doi.org/10.1093/bioinformatics/bti097","title":"COBrA: a bio-ontology editor","display_name":"COBrA: a bio-ontology editor","publication_year":2004,"publication_date":"2004-10-28","ids":{"openalex":"https://openalex.org/W2098780184","doi":"https://doi.org/10.1093/bioinformatics/bti097","mag":"2098780184","pmid":"https://pubmed.ncbi.nlm.nih.gov/15513995"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bti097","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti097","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/6/825/48962500/bioinformatics_21_6_825.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/21/6/825/48962500/bioinformatics_21_6_825.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108077024","display_name":"Stuart Aitken","orcid":null},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Stuart Aitken","raw_affiliation_strings":["School of Informatics, The University of Edinburgh, Edinburgh EH8 9LE, UK. stuart@aiai.ed.ac.uk","School of Informatics, the University of Edinburgh, Edinburgh EH8 9LE, UK"],"affiliations":[{"raw_affiliation_string":"School of Informatics, The University of Edinburgh, Edinburgh EH8 9LE, UK. stuart@aiai.ed.ac.uk","institution_ids":["https://openalex.org/I98677209"]},{"raw_affiliation_string":"School of Informatics, the University of Edinburgh, Edinburgh EH8 9LE, UK","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016225937","display_name":"Roman Korf","orcid":null},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Roman Korf","raw_affiliation_strings":["School of Informatics, the University of Edinburgh, Edinburgh EH8 9LE, UK"],"affiliations":[{"raw_affiliation_string":"School of Informatics, the University of Edinburgh, Edinburgh EH8 9LE, UK","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089032031","display_name":"Bonnie Webber","orcid":"https://orcid.org/0000-0002-4284-8216"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Bonnie Webber","raw_affiliation_strings":["School of Informatics, the University of Edinburgh, Edinburgh EH8 9LE, UK"],"affiliations":[{"raw_affiliation_string":"School of Informatics, the University of Edinburgh, Edinburgh EH8 9LE, UK","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053050989","display_name":"Jonathan Bard","orcid":null},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jonathan Bard","raw_affiliation_strings":["Biomedical Science, The University of Edinburgh Edinburgh EH8 9LE, UK#TAB#"],"affiliations":[{"raw_affiliation_string":"Biomedical Science, The University of Edinburgh Edinburgh EH8 9LE, UK#TAB#","institution_ids":["https://openalex.org/I98677209"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5108077024"],"corresponding_institution_ids":["https://openalex.org/I98677209"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.2864,"has_fulltext":false,"cited_by_count":19,"citation_normalized_percentile":{"value":0.7800034,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"21","issue":"6","first_page":"825","last_page":"826"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9865000247955322,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cobra","display_name":"Cobra","score":0.8112442493438721},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7478505373001099},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7436973452568054},{"id":"https://openalex.org/keywords/rdf-schema","display_name":"RDF Schema","score":0.6887988448143005},{"id":"https://openalex.org/keywords/rdf","display_name":"RDF","score":0.61196368932724},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.5883293151855469},{"id":"https://openalex.org/keywords/owl-s","display_name":"OWL-S","score":0.5354528427124023},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.5028101801872253},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.5010838508605957},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.47798842191696167},{"id":"https://openalex.org/keywords/web-ontology-language","display_name":"Web Ontology Language","score":0.4177852272987366},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.4153295159339905},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3253970444202423},{"id":"https://openalex.org/keywords/sparql","display_name":"SPARQL","score":0.18339157104492188},{"id":"https://openalex.org/keywords/social-semantic-web","display_name":"Social Semantic Web","score":0.1761551797389984},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.15789365768432617},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.10829728841781616},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09873726963996887}],"concepts":[{"id":"https://openalex.org/C2779547071","wikidata":"https://www.wikidata.org/wiki/Q608565","display_name":"Cobra","level":2,"score":0.8112442493438721},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7478505373001099},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7436973452568054},{"id":"https://openalex.org/C15657843","wikidata":"https://www.wikidata.org/wiki/Q1751819","display_name":"RDF Schema","level":5,"score":0.6887988448143005},{"id":"https://openalex.org/C147497476","wikidata":"https://www.wikidata.org/wiki/Q54872","display_name":"RDF","level":3,"score":0.61196368932724},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.5883293151855469},{"id":"https://openalex.org/C50382505","wikidata":"https://www.wikidata.org/wiki/Q2553356","display_name":"OWL-S","level":4,"score":0.5354528427124023},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.5028101801872253},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.5010838508605957},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.47798842191696167},{"id":"https://openalex.org/C101230327","wikidata":"https://www.wikidata.org/wiki/Q826165","display_name":"Web Ontology Language","level":3,"score":0.4177852272987366},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.4153295159339905},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3253970444202423},{"id":"https://openalex.org/C41009113","wikidata":"https://www.wikidata.org/wiki/Q54871","display_name":"SPARQL","level":4,"score":0.18339157104492188},{"id":"https://openalex.org/C534406577","wikidata":"https://www.wikidata.org/wiki/Q7550843","display_name":"Social Semantic Web","level":3,"score":0.1761551797389984},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.15789365768432617},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.10829728841781616},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09873726963996887},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D002468","descriptor_name":"Cell Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002468","descriptor_name":"Cell Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002468","descriptor_name":"Cell Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015443","descriptor_name":"Word Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015443","descriptor_name":"Word Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015443","descriptor_name":"Word Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bti097","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti097","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/6/825/48962500/bioinformatics_21_6_825.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15513995","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15513995","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bti097","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti097","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/6/825/48962500/bioinformatics_21_6_825.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.4699999988079071}],"awards":[],"funders":[{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2098780184.pdf","grobid_xml":"https://content.openalex.org/works/W2098780184.grobid-xml"},"referenced_works_count":4,"referenced_works":["https://openalex.org/W1836367264","https://openalex.org/W1996599952","https://openalex.org/W2002185882","https://openalex.org/W2103017472"],"related_works":["https://openalex.org/W1868817428","https://openalex.org/W2373434917","https://openalex.org/W2483423859","https://openalex.org/W2088614744","https://openalex.org/W31627897","https://openalex.org/W94162661","https://openalex.org/W168971055","https://openalex.org/W2095530000","https://openalex.org/W2098780184","https://openalex.org/W1692289893"],"abstract_inverted_index":{"COBrA":[0,41],"is":[1],"a":[2],"Java-based":[3],"ontology":[4],"editor":[5],"for":[6],"bio-ontologies":[7],"that":[8],"distinguishes":[9],"itself":[10],"from":[11],"other":[12],"editors":[13],"by":[14],"supporting":[15],"the":[16,33,48],"linking":[17],"of":[18],"concepts":[19],"between":[20],"two":[21],"ontologies,":[22],"and":[23,27,36,44,54],"providing":[24],"sophisticated":[25],"analysis":[26],"verification":[28],"functions.":[29],"In":[30],"addition":[31],"to":[32],"Gene":[34],"Ontology":[35],"Open":[37],"Biology":[38],"Ontologies":[39],"formats,":[40],"can":[42],"import":[43],"export":[45],"ontologies":[46],"in":[47],"Semantic":[49],"Web":[50],"formats":[51],"RDF,":[52],"RDFS":[53],"OWL.":[55]},"counts_by_year":[{"year":2017,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
