{"id":"https://openalex.org/W2096412974","doi":"https://doi.org/10.1093/bioinformatics/bti066","title":"Comparison of different melting temperature calculation methods for short DNA sequences","display_name":"Comparison of different melting temperature calculation methods for short DNA sequences","publication_year":2004,"publication_date":"2004-10-22","ids":{"openalex":"https://openalex.org/W2096412974","doi":"https://doi.org/10.1093/bioinformatics/bti066","mag":"2096412974","pmid":"https://pubmed.ncbi.nlm.nih.gov/15501913"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bti066","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti066","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/6/711/48962578/bioinformatics_21_6_711.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/21/6/711/48962578/bioinformatics_21_6_711.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050880477","display_name":"Alejandro Panjkovich","orcid":"https://orcid.org/0000-0002-9111-3232"},"institutions":[{"id":"https://openalex.org/I162148367","display_name":"Pontificia Universidad Cat\u00f3lica de Chile","ror":"https://ror.org/04teye511","country_code":"CL","type":"education","lineage":["https://openalex.org/I162148367"]}],"countries":["CL"],"is_corresponding":true,"raw_author_name":"Alejandro Panjkovich","raw_affiliation_strings":["Departamento de Gen\u00e9tica Molecular y Microbiolog\u00eda, Facultad de Ciencias Biol\u00f3gicas, Pontificia Universidad Cat\u00f3lica de Chile Alameda 340, Santiago, Chile"],"affiliations":[{"raw_affiliation_string":"Departamento de Gen\u00e9tica Molecular y Microbiolog\u00eda, Facultad de Ciencias Biol\u00f3gicas, Pontificia Universidad Cat\u00f3lica de Chile Alameda 340, Santiago, Chile","institution_ids":["https://openalex.org/I162148367"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032046108","display_name":"Francisco Melo","orcid":"https://orcid.org/0000-0002-0424-5991"},"institutions":[{"id":"https://openalex.org/I162148367","display_name":"Pontificia Universidad Cat\u00f3lica de Chile","ror":"https://ror.org/04teye511","country_code":"CL","type":"education","lineage":["https://openalex.org/I162148367"]}],"countries":["CL"],"is_corresponding":false,"raw_author_name":"Francisco Melo","raw_affiliation_strings":["Departamento de Gen\u00e9tica Molecular y Microbiolog\u00eda, Facultad de Ciencias Biol\u00f3gicas, Pontificia Universidad Cat\u00f3lica de Chile Alameda 340, Santiago, Chile"],"affiliations":[{"raw_affiliation_string":"Departamento de Gen\u00e9tica Molecular y Microbiolog\u00eda, Facultad de Ciencias Biol\u00f3gicas, Pontificia Universidad Cat\u00f3lica de Chile Alameda 340, Santiago, Chile","institution_ids":["https://openalex.org/I162148367"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5050880477"],"corresponding_institution_ids":["https://openalex.org/I162148367"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.8711,"has_fulltext":true,"cited_by_count":100,"citation_normalized_percentile":{"value":0.84624598,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"21","issue":"6","first_page":"711","last_page":"722"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/oligonucleotide","display_name":"Oligonucleotide","score":0.7375223636627197},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6116440892219543},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.578385591506958},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5401408076286316},{"id":"https://openalex.org/keywords/melting-temperature","display_name":"Melting temperature","score":0.538686990737915},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5043624639511108},{"id":"https://openalex.org/keywords/value","display_name":"Value (mathematics)","score":0.4804793894290924},{"id":"https://openalex.org/keywords/range","display_name":"Range (aeronautics)","score":0.47488540410995483},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4498136639595032},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.44464391469955444},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.4128338694572449},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3943046033382416},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.3866872191429138},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.3824670910835266},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24427655339241028},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.22168636322021484},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.20203977823257446},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.19871601462364197},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14508944749832153}],"concepts":[{"id":"https://openalex.org/C129312508","wikidata":"https://www.wikidata.org/wiki/Q133686","display_name":"Oligonucleotide","level":3,"score":0.7375223636627197},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6116440892219543},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.578385591506958},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5401408076286316},{"id":"https://openalex.org/C2985276288","wikidata":"https://www.wikidata.org/wiki/Q16873139","display_name":"Melting temperature","level":2,"score":0.538686990737915},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5043624639511108},{"id":"https://openalex.org/C2776291640","wikidata":"https://www.wikidata.org/wiki/Q2912517","display_name":"Value (mathematics)","level":2,"score":0.4804793894290924},{"id":"https://openalex.org/C204323151","wikidata":"https://www.wikidata.org/wiki/Q905424","display_name":"Range (aeronautics)","level":2,"score":0.47488540410995483},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4498136639595032},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.44464391469955444},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.4128338694572449},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3943046033382416},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.3866872191429138},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.3824670910835266},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24427655339241028},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.22168636322021484},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.20203977823257446},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.19871601462364197},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14508944749832153},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009841","descriptor_name":"Oligonucleotides","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D009841","descriptor_name":"Oligonucleotides","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D009841","descriptor_name":"Oligonucleotides","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D009841","descriptor_name":"Oligonucleotides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009841","descriptor_name":"Oligonucleotides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009841","descriptor_name":"Oligonucleotides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D044366","descriptor_name":"Transition Temperature","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044366","descriptor_name":"Transition Temperature","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044366","descriptor_name":"Transition Temperature","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bti066","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti066","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/6/711/48962578/bioinformatics_21_6_711.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15501913","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15501913","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bti066","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti066","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/6/711/48962578/bioinformatics_21_6_711.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2096412974.pdf","grobid_xml":"https://content.openalex.org/works/W2096412974.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W1512397531","https://openalex.org/W1613179247","https://openalex.org/W1970663985","https://openalex.org/W1988220558","https://openalex.org/W1988753748","https://openalex.org/W2009095852","https://openalex.org/W2009215649","https://openalex.org/W2012210882","https://openalex.org/W2021838563","https://openalex.org/W2059349870","https://openalex.org/W2059667789","https://openalex.org/W2064580019","https://openalex.org/W2070484449","https://openalex.org/W2076096295","https://openalex.org/W2077104455","https://openalex.org/W2082943954","https://openalex.org/W2087064181","https://openalex.org/W2125882871","https://openalex.org/W2135995702","https://openalex.org/W2164604555","https://openalex.org/W2170120409","https://openalex.org/W2416245991"],"related_works":["https://openalex.org/W2159038264","https://openalex.org/W2168160406","https://openalex.org/W2060852824","https://openalex.org/W2027177155","https://openalex.org/W2024398706","https://openalex.org/W1974344026","https://openalex.org/W2050630975","https://openalex.org/W1990057240","https://openalex.org/W1509371698","https://openalex.org/W2087429349"],"abstract_inverted_index":{"A":[0],"quantitative":[1,221],"comparison":[2,20],"on":[3,63,74],"the":[4,11,41,56,64,77,84,87,95,109,131,161,170,179,192,210,226],"similarities":[5],"and":[6,67,81,103,150,166,185,225],"differences":[7,51],"among":[8],"some":[9,60],"of":[10,28,44,79,97,106,117,147,156,194,204,214,228],"published":[12],"DNA/DNA":[13],"Tm":[14,122,172,181],"calculation":[15],"methods":[16,85,111,138],"is":[17,112,182,189],"reported.":[18,92],"The":[19,46],"was":[21,127],"carried":[22],"out":[23],"for":[24,83,108,168,209],"a":[25,70,101,120,154,183,201],"large":[26],"set":[27,203],"short":[29],"oligonucleotide":[30,65,88,148],"sequences":[31,159],"ranging":[32],"from":[33,134],"16":[34],"to":[35,94,143,206],"30":[36],"nt":[37],"long,":[38],"which":[39,58,169],"span":[40],"whole":[42],"range":[43,163],"CG-content.":[45],"results":[47,193],"showed":[48],"that":[49,139,178,191],"significant":[50],"were":[52,91],"observed":[53],"in":[54,59,69,86,160],"all":[55],"methods,":[57],"cases":[61],"depend":[62],"length":[66,149],"CG-content":[68,151],"non-trivial":[71],"manner.":[72],"Based":[73],"these":[75],"results,":[76],"regions":[78],"consensus":[80,121,180],"disagreement":[82],"feature":[89],"space":[90],"Owing":[93],"lack":[96],"sufficient":[98],"experimental":[99,171,212],"data,":[100],"fair":[102],"complete":[104],"assessment":[105],"accuracy":[107],"different":[110],"not":[113],"yet":[114],"possible.":[115],"Inspite":[116],"this":[118,195],"limitation,":[119],"with":[123],"minimal":[124],"error":[125],"probability":[126],"calculated":[128],"by":[129],"averaging":[130],"values":[132],"obtained":[133],"two":[135],"or":[136],"more":[137],"exhibit":[140],"similar":[141],"behavior":[142],"each":[144],"particular":[145],"combination":[146],"class.":[152],"Using":[153],"total":[155],"348":[157],"DNA":[158,230],"size":[162],"between":[164],"16mer":[165],"30mer,":[167],"data":[173],"are":[174],"available,":[175],"we":[176],"demonstrated":[177],"robust":[184],"accurate":[186],"measure.":[187],"It":[188],"expected":[190],"work":[196],"would":[197],"be":[198,207],"constituted":[199],"as":[200,220],"useful":[202],"guidelines":[205],"followed":[208],"successful":[211],"implementation":[213],"various":[215],"molecular":[216],"biology":[217],"techniques,":[218],"such":[219],"PCR,":[222],"multiplex":[223],"PCR":[224],"design":[227],"optimal":[229],"microarrays.":[231]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":5},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
