{"id":"https://openalex.org/W1992800126","doi":"https://doi.org/10.1093/bioinformatics/bti020","title":"Clann: investigating phylogenetic information through supertree analyses","display_name":"Clann: investigating phylogenetic information through supertree analyses","publication_year":2004,"publication_date":"2004-09-16","ids":{"openalex":"https://openalex.org/W1992800126","doi":"https://doi.org/10.1093/bioinformatics/bti020","mag":"1992800126","pmid":"https://pubmed.ncbi.nlm.nih.gov/15374874"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bti020","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti020","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/3/390/50305668/bioinformatics_21_3_390.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/21/3/390/50305668/bioinformatics_21_3_390.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061955804","display_name":"Christopher J. Creevey","orcid":"https://orcid.org/0000-0001-7183-1555"},"institutions":[{"id":"https://openalex.org/I157286207","display_name":"National University of Ireland, Maynooth","ror":"https://ror.org/048nfjm95","country_code":"IE","type":"education","lineage":["https://openalex.org/I157286207"]}],"countries":["IE"],"is_corresponding":true,"raw_author_name":"C. J. Creevey","raw_affiliation_strings":["Bioinformatics and Pharmacogenomics Laboratory, Department of Biology, National University of Ireland Maynooth, Co. Kildare, Ireland"],"affiliations":[{"raw_affiliation_string":"Bioinformatics and Pharmacogenomics Laboratory, Department of Biology, National University of Ireland Maynooth, Co. Kildare, Ireland","institution_ids":["https://openalex.org/I157286207"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037761875","display_name":"James O. McInerney","orcid":"https://orcid.org/0000-0003-1885-2503"},"institutions":[{"id":"https://openalex.org/I157286207","display_name":"National University of Ireland, Maynooth","ror":"https://ror.org/048nfjm95","country_code":"IE","type":"education","lineage":["https://openalex.org/I157286207"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"J. O. McInerney","raw_affiliation_strings":["Bioinformatics and Pharmacogenomics Laboratory, Department of Biology, National University of Ireland Maynooth, Co. Kildare, Ireland"],"affiliations":[{"raw_affiliation_string":"Bioinformatics and Pharmacogenomics Laboratory, Department of Biology, National University of Ireland Maynooth, Co. Kildare, Ireland","institution_ids":["https://openalex.org/I157286207"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5061955804"],"corresponding_institution_ids":["https://openalex.org/I157286207"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":4.4357,"has_fulltext":true,"cited_by_count":200,"citation_normalized_percentile":{"value":0.95249931,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"21","issue":"3","first_page":"390","last_page":"392"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11354","display_name":"Evolution and Paleontology Studies","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1911","display_name":"Paleontology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/supertree","display_name":"Supertree","score":0.9636777639389038},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7664710283279419},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.7425693869590759},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.605562150478363},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.5747005939483643},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.5566930770874023},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5118829011917114},{"id":"https://openalex.org/keywords/os-x","display_name":"OS X","score":0.4387027621269226},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.36478641629219055},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1626606583595276},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.08656859397888184},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07443243265151978}],"concepts":[{"id":"https://openalex.org/C55919133","wikidata":"https://www.wikidata.org/wiki/Q7644297","display_name":"Supertree","level":4,"score":0.9636777639389038},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7664710283279419},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.7425693869590759},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.605562150478363},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.5747005939483643},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.5566930770874023},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5118829011917114},{"id":"https://openalex.org/C515153823","wikidata":"https://www.wikidata.org/wiki/Q14116","display_name":"OS X","level":3,"score":0.4387027621269226},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.36478641629219055},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1626606583595276},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.08656859397888184},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07443243265151978},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010375","descriptor_name":"Pedigree","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010375","descriptor_name":"Pedigree","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010375","descriptor_name":"Pedigree","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bti020","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti020","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/3/390/50305668/bioinformatics_21_3_390.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15374874","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15374874","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:aber.ac.uk:publications/fdb0b017-80f9-4bbb-aaee-d503b58eee98","is_oa":true,"landing_page_url":null,"pdf_url":"https://pure.aber.ac.uk/portal/en/publications/clann-investigating-phylogenetic-information-through-supertree-analyses(fdb0b017-80f9-4bbb-aaee-d503b58eee98).html","source":{"id":"https://openalex.org/S4306401660","display_name":"Aberystwyth Research portal (Aberystwyth University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I16038530","host_organization_name":"Aberystwyth University","host_organization_lineage":["https://openalex.org/I16038530"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bti020","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti020","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/3/390/50305668/bioinformatics_21_3_390.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1992800126.pdf","grobid_xml":"https://content.openalex.org/works/W1992800126.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W1596422325","https://openalex.org/W1602258815","https://openalex.org/W1998459277","https://openalex.org/W2004116552","https://openalex.org/W2060665252","https://openalex.org/W2081030047","https://openalex.org/W2109596230","https://openalex.org/W2113093080","https://openalex.org/W2117897510","https://openalex.org/W2122240788","https://openalex.org/W2140000899","https://openalex.org/W2163924163","https://openalex.org/W2315781448","https://openalex.org/W3217097258","https://openalex.org/W4246728774","https://openalex.org/W4252749322"],"related_works":["https://openalex.org/W3111214985","https://openalex.org/W2145844324","https://openalex.org/W70956880","https://openalex.org/W4233205955","https://openalex.org/W2086288781","https://openalex.org/W2570931575","https://openalex.org/W2168234145","https://openalex.org/W1992800126","https://openalex.org/W4388212605","https://openalex.org/W3081644756"],"abstract_inverted_index":{"Clann":[0],"has":[1],"been":[2],"written":[3],"in":[4],"the":[5],"C":[6],"programming":[7],"language.":[8],"Source":[9],"code":[10],"is":[11],"available":[12],"on":[13],"request.":[14]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":13},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":9},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":15},{"year":2013,"cited_by_count":9},{"year":2012,"cited_by_count":14}],"updated_date":"2026-03-17T17:19:04.345684","created_date":"2025-10-10T00:00:00"}