{"id":"https://openalex.org/W2127764240","doi":"https://doi.org/10.1093/bioinformatics/bth119","title":"galaxie\u2014CGI scripts for sequence identification through automated phylogenetic analysis","display_name":"galaxie\u2014CGI scripts for sequence identification through automated phylogenetic analysis","publication_year":2004,"publication_date":"2004-02-19","ids":{"openalex":"https://openalex.org/W2127764240","doi":"https://doi.org/10.1093/bioinformatics/bth119","mag":"2127764240","pmid":"https://pubmed.ncbi.nlm.nih.gov/14976034"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bth119","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth119","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/9/1447/48905455/bioinformatics_20_9_1447.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/20/9/1447/48905455/bioinformatics_20_9_1447.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005681890","display_name":"R. Henrik Nilsson","orcid":"https://orcid.org/0000-0002-8052-0107"},"institutions":[{"id":"https://openalex.org/I881427289","display_name":"University of Gothenburg","ror":"https://ror.org/01tm6cn81","country_code":"SE","type":"education","lineage":["https://openalex.org/I881427289"]}],"countries":["SE"],"is_corresponding":true,"raw_author_name":"R. Henrik Nilsson","raw_affiliation_strings":["Botanical Institute, Goteborg University, Box 461, 405 30 Goteborg, Sweden. henrik.nilsson@botany.gu.se","Botanical Institute, G\u00f6teborg University, Box 461, 405 30 G\u00f6teborg, Sweden#TAB#"],"affiliations":[{"raw_affiliation_string":"Botanical Institute, Goteborg University, Box 461, 405 30 Goteborg, Sweden. henrik.nilsson@botany.gu.se","institution_ids":["https://openalex.org/I881427289"]},{"raw_affiliation_string":"Botanical Institute, G\u00f6teborg University, Box 461, 405 30 G\u00f6teborg, Sweden#TAB#","institution_ids":["https://openalex.org/I881427289"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053425744","display_name":"Karl\u2010Henrik Larsson","orcid":"https://orcid.org/0000-0002-1248-3674"},"institutions":[{"id":"https://openalex.org/I881427289","display_name":"University of Gothenburg","ror":"https://ror.org/01tm6cn81","country_code":"SE","type":"education","lineage":["https://openalex.org/I881427289"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Karl-Henrik Larsson","raw_affiliation_strings":["Botanical Institute, G\u00f6teborg University, Box 461, 405 30 G\u00f6teborg, Sweden#TAB#"],"affiliations":[{"raw_affiliation_string":"Botanical Institute, G\u00f6teborg University, Box 461, 405 30 G\u00f6teborg, Sweden#TAB#","institution_ids":["https://openalex.org/I881427289"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5113585835","display_name":"Bj\u00f6rn M. Ursing","orcid":null},"institutions":[{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Bj\u00f6rn M. Ursing","raw_affiliation_strings":["Center for Genomics and Bioinformatics, Karolinska Institutet, Berzelius v. 35, 171 77 Stockholm, Sweden#TAB#"],"affiliations":[{"raw_affiliation_string":"Center for Genomics and Bioinformatics, Karolinska Institutet, Berzelius v. 35, 171 77 Stockholm, Sweden#TAB#","institution_ids":["https://openalex.org/I28166907"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5005681890"],"corresponding_institution_ids":["https://openalex.org/I881427289"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.0525,"has_fulltext":false,"cited_by_count":26,"citation_normalized_percentile":{"value":0.74561553,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"20","issue":"9","first_page":"1447","last_page":"1452"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9850999712944031,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.7836467027664185},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.7400540113449097},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6644086837768555},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5912015438079834},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5168309807777405},{"id":"https://openalex.org/keywords/sequence-analysis","display_name":"Sequence analysis","score":0.4960075318813324},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4602583348751068},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4208866357803345},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4078490138053894},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.31753766536712646},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2188936471939087},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13152796030044556}],"concepts":[{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.7836467027664185},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.7400540113449097},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6644086837768555},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5912015438079834},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5168309807777405},{"id":"https://openalex.org/C61053724","wikidata":"https://www.wikidata.org/wiki/Q1154615","display_name":"Sequence analysis","level":3,"score":0.4960075318813324},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4602583348751068},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4208866357803345},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4078490138053894},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.31753766536712646},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2188936471939087},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13152796030044556},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003195","descriptor_name":"Computer Communication Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003195","descriptor_name":"Computer Communication Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003195","descriptor_name":"Computer Communication Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bth119","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth119","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/9/1447/48905455/bioinformatics_20_9_1447.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:14976034","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/14976034","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bth119","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth119","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/9/1447/48905455/bioinformatics_20_9_1447.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322125","display_name":"Stiftelserna Wilhelm och Martina Lundgrens","ror":"https://ror.org/00f08y308"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2127764240.pdf","grobid_xml":"https://content.openalex.org/works/W2127764240.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W1487781539","https://openalex.org/W1519581273","https://openalex.org/W1558365920","https://openalex.org/W2015292449","https://openalex.org/W2022144066","https://openalex.org/W2099901798","https://openalex.org/W2101131956","https://openalex.org/W2106763642","https://openalex.org/W2106882534","https://openalex.org/W2110369783","https://openalex.org/W2116320740","https://openalex.org/W2129161606","https://openalex.org/W2140163059","https://openalex.org/W2151831732","https://openalex.org/W2158714788","https://openalex.org/W2166865790","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2046765700","https://openalex.org/W4384345686","https://openalex.org/W262455470","https://openalex.org/W4242899858","https://openalex.org/W2145834781","https://openalex.org/W2357937784","https://openalex.org/W2547618384","https://openalex.org/W2577782152","https://openalex.org/W2087388313","https://openalex.org/W2391956478"],"abstract_inverted_index":{"A":[0],"service":[1],"installation":[2],"and":[3,13],"a":[4],"version":[5],"for":[6],"local":[7],"use":[8],"are":[9],"found":[10],"at":[11],"http://andromeda.botany.gu.se/galaxiewelcome.html":[12],"http://galaxie.cgb.ki.se":[14]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2012,"cited_by_count":2}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
