{"id":"https://openalex.org/W2121063860","doi":"https://doi.org/10.1093/bioinformatics/btg246","title":"An XML message broker framework for exchange and integration of microarray data","display_name":"An XML message broker framework for exchange and integration of microarray data","publication_year":2003,"publication_date":"2003-09-22","ids":{"openalex":"https://openalex.org/W2121063860","doi":"https://doi.org/10.1093/bioinformatics/btg246","mag":"2121063860","pmid":"https://pubmed.ncbi.nlm.nih.gov/14512357"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btg246","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btg246","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/19/14/1844/48904522/bioinformatics_19_14_1844.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/19/14/1844/48904522/bioinformatics_19_14_1844.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044673987","display_name":"Donny Tjandra","orcid":null},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]},{"id":"https://openalex.org/I4210110664","display_name":"University of California San Francisco Medical Center","ror":"https://ror.org/01t8svj65","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210110664"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Donny Tjandra","raw_affiliation_strings":["UCSF Department of Radiology, 505 Parnassus Avenue, Box 0628, San Francisco, CA 94143-0628, USA. donny.tjandra@radiology.ucsf.edu","UCSF Department of Radiology, 505 Parnassus Avenue Box 0628, San Francisco, CA 94143-0628, USA"],"affiliations":[{"raw_affiliation_string":"UCSF Department of Radiology, 505 Parnassus Avenue, Box 0628, San Francisco, CA 94143-0628, USA. donny.tjandra@radiology.ucsf.edu","institution_ids":[]},{"raw_affiliation_string":"UCSF Department of Radiology, 505 Parnassus Avenue Box 0628, San Francisco, CA 94143-0628, USA","institution_ids":["https://openalex.org/I4210110664","https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015077092","display_name":"Stephen T.C. Wong","orcid":"https://orcid.org/0000-0001-9188-6502"},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stephen Wong","raw_affiliation_strings":["Department of Radiology, Brigham & Women Hospital, Harvard Medical School, Boston, MA 02115, USA,","Harvard Center for Neurodegeneration and Repair (HCNR), Harvard Medical School, Boston, MA 02115, USA,","Department of Systems Medicine & Bioengineering"],"affiliations":[{"raw_affiliation_string":"Department of Radiology, Brigham & Women Hospital, Harvard Medical School, Boston, MA 02115, USA,","institution_ids":["https://openalex.org/I1283280774","https://openalex.org/I136199984"]},{"raw_affiliation_string":"Harvard Center for Neurodegeneration and Repair (HCNR), Harvard Medical School, Boston, MA 02115, USA,","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"Department of Systems Medicine & Bioengineering","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048145308","display_name":"Weimin Shen","orcid":"https://orcid.org/0000-0001-7500-344X"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Weimin Shen","raw_affiliation_strings":["UCSF Department of Radiology, 505 Parnassus Avenue, Box 0628, San Francisco, CA 94143-0628, USA,","UCSF Department of Radiology;"],"affiliations":[{"raw_affiliation_string":"UCSF Department of Radiology, 505 Parnassus Avenue, Box 0628, San Francisco, CA 94143-0628, USA,","institution_ids":[]},{"raw_affiliation_string":"UCSF Department of Radiology;","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082880101","display_name":"Brian Pulliam","orcid":null},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brian Pulliam","raw_affiliation_strings":["Department of Biochemistry and Biophysics, University of California, San Francisco, CA 94143, USA,","University of California\u2014San Francisco"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Biophysics, University of California, San Francisco, CA 94143, USA,","institution_ids":["https://openalex.org/I180670191"]},{"raw_affiliation_string":"University of California\u2014San Francisco","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058282292","display_name":"Elaine A. Yu","orcid":"https://orcid.org/0000-0003-2433-9562"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]},{"id":"https://openalex.org/I4210154189","display_name":"Zero Breast Cancer","ror":"https://ror.org/05jd76e15","country_code":"US","type":"other","lineage":["https://openalex.org/I4210154189"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Elaine Yu","raw_affiliation_strings":["Carol Franc Buck Breast Care Center, University of California, San Francisco, CA 94115, USA and","University of California\u2014San Francisco"],"affiliations":[{"raw_affiliation_string":"Carol Franc Buck Breast Care Center, University of California, San Francisco, CA 94115, USA and","institution_ids":["https://openalex.org/I4210154189","https://openalex.org/I180670191"]},{"raw_affiliation_string":"University of California\u2014San Francisco","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5072789687","display_name":"Laura J. Esserman","orcid":"https://orcid.org/0000-0001-9202-4568"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]},{"id":"https://openalex.org/I2803209242","display_name":"University of California System","ror":"https://ror.org/00pjdza24","country_code":"US","type":"education","lineage":["https://openalex.org/I2803209242"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Laura Esserman","raw_affiliation_strings":["University of California, San Francisco","University of California School of Medicine"],"affiliations":[{"raw_affiliation_string":"University of California, San Francisco","institution_ids":["https://openalex.org/I180670191"]},{"raw_affiliation_string":"University of California School of Medicine","institution_ids":["https://openalex.org/I2803209242"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5044673987"],"corresponding_institution_ids":["https://openalex.org/I180670191","https://openalex.org/I4210110664"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.5674,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.64792473,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"19","issue":"14","first_page":"1844","last_page":"1845"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9825999736785889,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.7931979298591614},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7070178389549255},{"id":"https://openalex.org/keywords/microarray-databases","display_name":"Microarray databases","score":0.6875564455986023},{"id":"https://openalex.org/keywords/markup-language","display_name":"Markup language","score":0.5697259306907654},{"id":"https://openalex.org/keywords/data-exchange","display_name":"Data exchange","score":0.5621663928031921},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5486146807670593},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.47646164894104004},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4703253507614136},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.46056801080703735},{"id":"https://openalex.org/keywords/microarray-analysis-techniques","display_name":"Microarray analysis techniques","score":0.4257136583328247},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.35382145643234253},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.1940802037715912},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1063598096370697},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09080031514167786}],"concepts":[{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.7931979298591614},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7070178389549255},{"id":"https://openalex.org/C548314002","wikidata":"https://www.wikidata.org/wiki/Q6839218","display_name":"Microarray databases","level":5,"score":0.6875564455986023},{"id":"https://openalex.org/C45874996","wikidata":"https://www.wikidata.org/wiki/Q37045","display_name":"Markup language","level":3,"score":0.5697259306907654},{"id":"https://openalex.org/C15845906","wikidata":"https://www.wikidata.org/wiki/Q1172338","display_name":"Data exchange","level":2,"score":0.5621663928031921},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5486146807670593},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.47646164894104004},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4703253507614136},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.46056801080703735},{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.4257136583328247},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.35382145643234253},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.1940802037715912},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1063598096370697},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09080031514167786},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019146","descriptor_name":"Hypermedia","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019146","descriptor_name":"Hypermedia","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019146","descriptor_name":"Hypermedia","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btg246","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btg246","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/19/14/1844/48904522/bioinformatics_19_14_1844.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:14512357","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/14512357","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btg246","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btg246","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/19/14/1844/48904522/bioinformatics_19_14_1844.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2121063860.pdf","grobid_xml":"https://content.openalex.org/works/W2121063860.grobid-xml"},"referenced_works_count":3,"referenced_works":["https://openalex.org/W1486283310","https://openalex.org/W1544923801","https://openalex.org/W1838662240"],"related_works":["https://openalex.org/W2440748821","https://openalex.org/W2072881356","https://openalex.org/W2151007749","https://openalex.org/W2359120624","https://openalex.org/W2498363374","https://openalex.org/W2138100784","https://openalex.org/W1554236828","https://openalex.org/W2160130936","https://openalex.org/W1594655861","https://openalex.org/W2490137852"],"abstract_inverted_index":{"Open":[0],"source":[1],"software":[2],"will":[3],"be":[4],"available":[5],"from":[6],"SourceForge":[7],"(http://sourceforge.net/projects/microsoap/).":[8]},"counts_by_year":[],"updated_date":"2026-03-07T13:37:22.277990","created_date":"2025-10-10T00:00:00"}
