{"id":"https://openalex.org/W7124858100","doi":"https://doi.org/10.1093/bioinformatics/btag036","title":"Uniform design-embedded predictions of (tetra-)peptide physicochemical properties","display_name":"Uniform design-embedded predictions of (tetra-)peptide physicochemical properties","publication_year":2026,"publication_date":"2026-01-15","ids":{"openalex":"https://openalex.org/W7124858100","doi":"https://doi.org/10.1093/bioinformatics/btag036","pmid":"https://pubmed.ncbi.nlm.nih.gov/41555497"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btag036","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btag036","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bioinformatics/btag036","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5123411166","display_name":"Zhihui Zhu","orcid":null},"institutions":[{"id":"https://openalex.org/I168879160","display_name":"Zhejiang University of Science and Technology","ror":"https://ror.org/05mx0wr29","country_code":"CN","type":"education","lineage":["https://openalex.org/I168879160"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhihui Zhu","raw_affiliation_strings":["ZJU-Hangzhou Global Scientific and Technological Innovation Center, Zhejiang University , Hangzhou, Zhejiang 311215,"],"affiliations":[{"raw_affiliation_string":"ZJU-Hangzhou Global Scientific and Technological Innovation Center, Zhejiang University , Hangzhou, Zhejiang 311215,","institution_ids":["https://openalex.org/I168879160"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072436458","display_name":"Huapeng Liu","orcid":null},"institutions":[{"id":"https://openalex.org/I69356397","display_name":"Xi\u2019an Jiaotong-Liverpool University","ror":"https://ror.org/03zmrmn05","country_code":"CN","type":"education","lineage":["https://openalex.org/I69356397"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huapeng Liu","raw_affiliation_strings":["Wisdom Lake Academy of Pharmacy, Xi\u2019an Jiaotong-Liverpool University , Suzhou, Jiangsu 215123,"],"affiliations":[{"raw_affiliation_string":"Wisdom Lake Academy of Pharmacy, Xi\u2019an Jiaotong-Liverpool University , Suzhou, Jiangsu 215123,","institution_ids":["https://openalex.org/I69356397"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5123414024","display_name":"Xuechen Li","orcid":null},"institutions":[{"id":"https://openalex.org/I4210130449","display_name":"State Key Laboratory of Synthetic Chemistry","ror":"https://ror.org/038ey3e97","country_code":"CN","type":"facility","lineage":["https://openalex.org/I177725633","https://openalex.org/I19820366","https://openalex.org/I4210112946","https://openalex.org/I4210130449","https://openalex.org/I889458895"]},{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["CN","HK"],"is_corresponding":false,"raw_author_name":"Xuechen Li","raw_affiliation_strings":["Department of Chemistry, State Key Laboratory of Synthetic Chemistry, The University of Hong Kong , Pokfulam, Hong Kong SAR 999077,"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry, State Key Laboratory of Synthetic Chemistry, The University of Hong Kong , Pokfulam, Hong Kong SAR 999077,","institution_ids":["https://openalex.org/I4210130449","https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5123377092","display_name":"Haojin Zhou","orcid":null},"institutions":[{"id":"https://openalex.org/I69356397","display_name":"Xi\u2019an Jiaotong-Liverpool University","ror":"https://ror.org/03zmrmn05","country_code":"CN","type":"education","lineage":["https://openalex.org/I69356397"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haojin Zhou","raw_affiliation_strings":["Wisdom Lake Academy of Pharmacy, Xi\u2019an Jiaotong-Liverpool University , Suzhou, Jiangsu 215123,"],"affiliations":[{"raw_affiliation_string":"Wisdom Lake Academy of Pharmacy, Xi\u2019an Jiaotong-Liverpool University , Suzhou, Jiangsu 215123,","institution_ids":["https://openalex.org/I69356397"]}]},{"author_position":"last","author":{"id":null,"display_name":"Jiaqi Wang","orcid":"https://orcid.org/0000-0002-5045-1497"},"institutions":[{"id":"https://openalex.org/I4210130449","display_name":"State Key Laboratory of Synthetic Chemistry","ror":"https://ror.org/038ey3e97","country_code":"CN","type":"facility","lineage":["https://openalex.org/I177725633","https://openalex.org/I19820366","https://openalex.org/I4210112946","https://openalex.org/I4210130449","https://openalex.org/I889458895"]},{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["CN","HK"],"is_corresponding":false,"raw_author_name":"Jiaqi Wang","raw_affiliation_strings":["Department of Chemistry, State Key Laboratory of Synthetic Chemistry, The University of Hong Kong , Pokfulam, Hong Kong SAR 999077,"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry, State Key Laboratory of Synthetic Chemistry, The University of Hong Kong , Pokfulam, Hong Kong SAR 999077,","institution_ids":["https://openalex.org/I4210130449","https://openalex.org/I889458895"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5123411166"],"corresponding_institution_ids":["https://openalex.org/I168879160"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.13378102,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"42","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.8431000113487244,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.8431000113487244,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11419","display_name":"Supramolecular Self-Assembly in Materials","score":0.03269999846816063,"subfield":{"id":"https://openalex.org/subfields/2502","display_name":"Biomaterials"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.029500000178813934,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4115000069141388}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5478000044822693},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.4474000036716461},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4115000069141388},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.35339999198913574},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3521000146865845},{"id":"https://openalex.org/C28826006","wikidata":"https://www.wikidata.org/wiki/Q33521","display_name":"Applied mathematics","level":1,"score":0.328900009393692},{"id":"https://openalex.org/C21880701","wikidata":"https://www.wikidata.org/wiki/Q2144042","display_name":"Process engineering","level":1,"score":0.27399998903274536},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.25920000672340393},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2556000053882599},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2542000114917755}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009842","descriptor_name":"Oligopeptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D009842","descriptor_name":"Oligopeptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057927","descriptor_name":"Hydrophobic and Hydrophilic Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057927","descriptor_name":"Hydrophobic and Hydrophilic Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btag036","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btag036","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41555497","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41555497","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:13032896","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13032896/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btag036","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btag036","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3928359561","display_name":null,"funder_award_id":"52101023","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":38,"referenced_works":["https://openalex.org/W1031578623","https://openalex.org/W1981416330","https://openalex.org/W1999611683","https://openalex.org/W2000729091","https://openalex.org/W2001850844","https://openalex.org/W2003657827","https://openalex.org/W2008056655","https://openalex.org/W2026593599","https://openalex.org/W2040396531","https://openalex.org/W2051864856","https://openalex.org/W2067258309","https://openalex.org/W2079315534","https://openalex.org/W2113242816","https://openalex.org/W2119267663","https://openalex.org/W2129888542","https://openalex.org/W2171464043","https://openalex.org/W2239529933","https://openalex.org/W2314292783","https://openalex.org/W2507241899","https://openalex.org/W2765204032","https://openalex.org/W2963433607","https://openalex.org/W2999173924","https://openalex.org/W3041561710","https://openalex.org/W3157808708","https://openalex.org/W4213283575","https://openalex.org/W4230321861","https://openalex.org/W4304810496","https://openalex.org/W4307715799","https://openalex.org/W4313433600","https://openalex.org/W4367692695","https://openalex.org/W4382775111","https://openalex.org/W4387034105","https://openalex.org/W4388776996","https://openalex.org/W4391243484","https://openalex.org/W4392091326","https://openalex.org/W4402200037","https://openalex.org/W4404501413","https://openalex.org/W4417290157"],"related_works":[],"abstract_inverted_index":{"The":[0],"complete":[1],"datasets,":[2],"source":[3],"code,":[4],"and":[5,16],"pretrained":[6],"models":[7],"are":[8],"made":[9],"available":[10],"at":[11],"the":[12],"Github":[13],"repository":[14],"(https://github.com/JiaqiBenWang/UD-AI-Peptide)":[15],"Zenodo":[17],"(https://doi.org/10.5281/zenodo.17984124).":[18]},"counts_by_year":[],"updated_date":"2026-04-09T08:11:56.329763","created_date":"2026-01-21T00:00:00"}
