{"id":"https://openalex.org/W4415830215","doi":"https://doi.org/10.1093/bioinformatics/btaf601","title":"RNAtive to recognize native-like structure in a set of RNA 3D models","display_name":"RNAtive to recognize native-like structure in a set of RNA 3D models","publication_year":2025,"publication_date":"2025-10-29","ids":{"openalex":"https://openalex.org/W4415830215","doi":"https://doi.org/10.1093/bioinformatics/btaf601","pmid":"https://pubmed.ncbi.nlm.nih.gov/41183118"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf601","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf601","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/41/11/btaf601/65132113/btaf601.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/41/11/btaf601/65132113/btaf601.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5118819047","display_name":"Jan Pielesiak","orcid":"https://orcid.org/0009-0007-3791-9482"},"institutions":[{"id":"https://openalex.org/I46597724","display_name":"Pozna\u0144 University of Technology","ror":"https://ror.org/00p7p3302","country_code":"PL","type":"education","lineage":["https://openalex.org/I46597724"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Jan Pielesiak","raw_affiliation_strings":["Institute of Computing Science, Poznan University of Technology , Poznan 60-965,","Institute of Computing Science, Poznan University of Technology, Poznan, 60-965, Poland"],"affiliations":[{"raw_affiliation_string":"Institute of Computing Science, Poznan University of Technology , Poznan 60-965,","institution_ids":["https://openalex.org/I46597724"]},{"raw_affiliation_string":"Institute of Computing Science, Poznan University of Technology, Poznan, 60-965, Poland","institution_ids":["https://openalex.org/I46597724"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045163807","display_name":"Maciej Antczak","orcid":"https://orcid.org/0000-0002-5320-2023"},"institutions":[{"id":"https://openalex.org/I4210152414","display_name":"Institute of Bioorganic Chemistry, Polish Academy of Sciences","ror":"https://ror.org/04ejdtr48","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210152414","https://openalex.org/I99542240"]},{"id":"https://openalex.org/I46597724","display_name":"Pozna\u0144 University of Technology","ror":"https://ror.org/00p7p3302","country_code":"PL","type":"education","lineage":["https://openalex.org/I46597724"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Maciej Antczak","raw_affiliation_strings":["Institute of Bioorganic Chemistry, Polish Academy of Sciences , Poznan 61-704,","Institute of Computing Science, Poznan University of Technology , Poznan 60-965,","Institute of Computing Science, Poznan University of Technology, Poznan, 60-965, Poland","Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, 61-704, Poland"],"affiliations":[{"raw_affiliation_string":"Institute of Bioorganic Chemistry, Polish Academy of Sciences , Poznan 61-704,","institution_ids":["https://openalex.org/I4210152414"]},{"raw_affiliation_string":"Institute of Computing Science, Poznan University of Technology , Poznan 60-965,","institution_ids":["https://openalex.org/I46597724"]},{"raw_affiliation_string":"Institute of Computing Science, Poznan University of Technology, Poznan, 60-965, Poland","institution_ids":["https://openalex.org/I46597724"]},{"raw_affiliation_string":"Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, 61-704, Poland","institution_ids":["https://openalex.org/I4210152414"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056736610","display_name":"Marta Szachniuk","orcid":"https://orcid.org/0000-0002-8724-7908"},"institutions":[{"id":"https://openalex.org/I4210152414","display_name":"Institute of Bioorganic Chemistry, Polish Academy of Sciences","ror":"https://ror.org/04ejdtr48","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210152414","https://openalex.org/I99542240"]},{"id":"https://openalex.org/I46597724","display_name":"Pozna\u0144 University of Technology","ror":"https://ror.org/00p7p3302","country_code":"PL","type":"education","lineage":["https://openalex.org/I46597724"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Marta Szachniuk","raw_affiliation_strings":["Institute of Bioorganic Chemistry, Polish Academy of Sciences , Poznan 61-704,","Institute of Computing Science, Poznan University of Technology , Poznan 60-965,","Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, 61-704, Poland","Institute of Computing Science, Poznan University of Technology, Poznan, 60-965, Poland"],"affiliations":[{"raw_affiliation_string":"Institute of Bioorganic Chemistry, Polish Academy of Sciences , Poznan 61-704,","institution_ids":["https://openalex.org/I4210152414"]},{"raw_affiliation_string":"Institute of Computing Science, Poznan University of Technology , Poznan 60-965,","institution_ids":["https://openalex.org/I46597724"]},{"raw_affiliation_string":"Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, 61-704, Poland","institution_ids":["https://openalex.org/I4210152414"]},{"raw_affiliation_string":"Institute of Computing Science, Poznan University of Technology, Poznan, 60-965, Poland","institution_ids":["https://openalex.org/I46597724"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091783406","display_name":"Tomasz \u017bok","orcid":"https://orcid.org/0000-0003-4103-9238"},"institutions":[{"id":"https://openalex.org/I46597724","display_name":"Pozna\u0144 University of Technology","ror":"https://ror.org/00p7p3302","country_code":"PL","type":"education","lineage":["https://openalex.org/I46597724"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Tomasz Zok","raw_affiliation_strings":["Institute of Computing Science, Poznan University of Technology , Poznan 60-965,","Institute of Computing Science, Poznan University of Technology, Poznan, 60-965, Poland"],"affiliations":[{"raw_affiliation_string":"Institute of Computing Science, Poznan University of Technology , Poznan 60-965,","institution_ids":["https://openalex.org/I46597724"]},{"raw_affiliation_string":"Institute of Computing Science, Poznan University of Technology, Poznan, 60-965, Poland","institution_ids":["https://openalex.org/I46597724"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5118819047"],"corresponding_institution_ids":["https://openalex.org/I46597724"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.8149,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.78321349,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"41","issue":"11","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12610","display_name":"RNA regulation and disease","score":0.6610000133514404,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12610","display_name":"RNA regulation and disease","score":0.6610000133514404,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.1655000001192093,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.053599998354911804,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.7124000191688538},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.5306000113487244},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5066999793052673},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.4546000063419342},{"id":"https://openalex.org/keywords/nucleic-acid-structure","display_name":"Nucleic acid structure","score":0.3160000145435333}],"concepts":[{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.7124000191688538},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7034000158309937},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5306000113487244},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5066999793052673},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.47510001063346863},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.4546000063419342},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3880000114440918},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.37619999051094055},{"id":"https://openalex.org/C126142528","wikidata":"https://www.wikidata.org/wiki/Q3771876","display_name":"Nucleic acid structure","level":4,"score":0.3160000145435333},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3149000108242035},{"id":"https://openalex.org/C3019007443","wikidata":"https://www.wikidata.org/wiki/Q568742","display_name":"3d model","level":2,"score":0.2904999852180481},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.2838999927043915},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.2639000117778778}],"mesh":[{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaf601","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf601","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/41/11/btaf601/65132113/btaf601.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41183118","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41183118","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:11418499","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12607262","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf601","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf601","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/41/11/btaf601/65132113/btaf601.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322481","display_name":"Politechnika Pozna\u0144ska","ror":"https://ror.org/00p7p3302"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4415830215.pdf"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W1944024379","https://openalex.org/W1982680051","https://openalex.org/W2015898726","https://openalex.org/W2021581601","https://openalex.org/W2024148070","https://openalex.org/W2035091896","https://openalex.org/W2091705944","https://openalex.org/W2103894153","https://openalex.org/W2110483430","https://openalex.org/W2119896557","https://openalex.org/W2120768154","https://openalex.org/W2122339645","https://openalex.org/W2131169717","https://openalex.org/W2140673705","https://openalex.org/W2143407915","https://openalex.org/W2158073100","https://openalex.org/W2463016798","https://openalex.org/W2518104501","https://openalex.org/W2765459505","https://openalex.org/W2765948208","https://openalex.org/W2799989945","https://openalex.org/W2891315578","https://openalex.org/W2902320679","https://openalex.org/W2941779667","https://openalex.org/W2952457720","https://openalex.org/W2981760759","https://openalex.org/W2988889042","https://openalex.org/W3088433853","https://openalex.org/W3160175161","https://openalex.org/W3195820203","https://openalex.org/W3213615006","https://openalex.org/W4205417573","https://openalex.org/W4220987767","https://openalex.org/W4224235635","https://openalex.org/W4280593620","https://openalex.org/W4292240017","https://openalex.org/W4307137870","https://openalex.org/W4323076291","https://openalex.org/W4380291688","https://openalex.org/W4387931208","https://openalex.org/W4388412569","https://openalex.org/W4403172808","https://openalex.org/W4404249429"],"related_works":[],"abstract_inverted_index":{"RNAtive":[0],"is":[1],"a":[2,8],"freely":[3],"accessible":[4],"web":[5],"server":[6],"with":[7],"modern,":[9],"user-friendly":[10],"interface,":[11],"available":[12],"for":[13],"scientific,":[14],"educational,":[15],"and":[16],"commercial":[17],"use":[18],"at":[19],"https://rnative.cs.put.poznan.pl/.":[20]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-03-27T14:29:43.386196","created_date":"2025-11-04T00:00:00"}
