{"id":"https://openalex.org/W4415309441","doi":"https://doi.org/10.1093/bioinformatics/btaf579","title":"DeepFold-PLM: accelerating protein structure prediction via efficient homology search using protein language models","display_name":"DeepFold-PLM: accelerating protein structure prediction via efficient homology search using protein language models","publication_year":2025,"publication_date":"2025-10-15","ids":{"openalex":"https://openalex.org/W4415309441","doi":"https://doi.org/10.1093/bioinformatics/btaf579","pmid":"https://pubmed.ncbi.nlm.nih.gov/41104652"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf579","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf579","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/41/11/btaf579/64729797/btaf579.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/41/11/btaf579/64729797/btaf579.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100362663","display_name":"Minsoo Kim","orcid":"https://orcid.org/0000-0002-3961-9703"},"institutions":[{"id":"https://openalex.org/I848706","display_name":"Sungkyunkwan University","ror":"https://ror.org/04q78tk20","country_code":"KR","type":"education","lineage":["https://openalex.org/I848706"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Minsoo Kim","raw_affiliation_strings":["Department of Physics, Sungkyunkwan University , Suwon 16419,","Department of Physics, Sungkyunkwan University, Suwon 16419, Korea"],"affiliations":[{"raw_affiliation_string":"Department of Physics, Sungkyunkwan University , Suwon 16419,","institution_ids":["https://openalex.org/I848706"]},{"raw_affiliation_string":"Department of Physics, Sungkyunkwan University, Suwon 16419, Korea","institution_ids":["https://openalex.org/I848706"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Hanjin Bae","orcid":null},"institutions":[{"id":"https://openalex.org/I848706","display_name":"Sungkyunkwan University","ror":"https://ror.org/04q78tk20","country_code":"KR","type":"education","lineage":["https://openalex.org/I848706"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Hanjin Bae","raw_affiliation_strings":["Department of Physics, Sungkyunkwan University , Suwon 16419,","Department of Physics, Sungkyunkwan University, Suwon 16419, Korea"],"affiliations":[{"raw_affiliation_string":"Department of Physics, Sungkyunkwan University , Suwon 16419,","institution_ids":["https://openalex.org/I848706"]},{"raw_affiliation_string":"Department of Physics, Sungkyunkwan University, Suwon 16419, Korea","institution_ids":["https://openalex.org/I848706"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5116257136","display_name":"Gyeongpil Jo","orcid":null},"institutions":[{"id":"https://openalex.org/I848706","display_name":"Sungkyunkwan University","ror":"https://ror.org/04q78tk20","country_code":"KR","type":"education","lineage":["https://openalex.org/I848706"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Gyeongpil Jo","raw_affiliation_strings":["Department of Physics, Sungkyunkwan University , Suwon 16419,","Department of Physics, Sungkyunkwan University, Suwon 16419, Korea"],"affiliations":[{"raw_affiliation_string":"Department of Physics, Sungkyunkwan University , Suwon 16419,","institution_ids":["https://openalex.org/I848706"]},{"raw_affiliation_string":"Department of Physics, Sungkyunkwan University, Suwon 16419, Korea","institution_ids":["https://openalex.org/I848706"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101770892","display_name":"Kun-Woo Kim","orcid":"https://orcid.org/0000-0002-4729-5243"},"institutions":[{"id":"https://openalex.org/I848706","display_name":"Sungkyunkwan University","ror":"https://ror.org/04q78tk20","country_code":"KR","type":"education","lineage":["https://openalex.org/I848706"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Kunwoo Kim","raw_affiliation_strings":["Department of Physics, Sungkyunkwan University , Suwon 16419,","Department of Physics, Sungkyunkwan University, Suwon 16419, Korea"],"affiliations":[{"raw_affiliation_string":"Department of Physics, Sungkyunkwan University , Suwon 16419,","institution_ids":["https://openalex.org/I848706"]},{"raw_affiliation_string":"Department of Physics, Sungkyunkwan University, Suwon 16419, Korea","institution_ids":["https://openalex.org/I848706"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002432971","display_name":"Sung Jong Lee","orcid":"https://orcid.org/0000-0002-6077-2649"},"institutions":[{"id":"https://openalex.org/I174101054","display_name":"Changwon National University","ror":"https://ror.org/04ts4qa58","country_code":"KR","type":"education","lineage":["https://openalex.org/I174101054"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Sung Jong Lee","raw_affiliation_strings":["Basic Science Research Institute, Changwon National University , Changwon 51140,","Basic Science Research Institute, Changwon National University, Changwon 51140, Korea"],"affiliations":[{"raw_affiliation_string":"Basic Science Research Institute, Changwon National University , Changwon 51140,","institution_ids":["https://openalex.org/I174101054"]},{"raw_affiliation_string":"Basic Science Research Institute, Changwon National University, Changwon 51140, Korea","institution_ids":["https://openalex.org/I174101054"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008976394","display_name":"Jejoong Yoo","orcid":"https://orcid.org/0000-0001-7120-8464"},"institutions":[{"id":"https://openalex.org/I125608817","display_name":"Korea Institute for Advanced Study","ror":"https://ror.org/041hz9568","country_code":"KR","type":"facility","lineage":["https://openalex.org/I125608817"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jejoong Yoo","raw_affiliation_strings":["School of Computational Sciences, Korea Institute for Advanced Study , Seoul 02455,","School of Computational Sciences, Korea Institute for Advanced Study, Seoul 02455, Korea"],"affiliations":[{"raw_affiliation_string":"School of Computational Sciences, Korea Institute for Advanced Study , Seoul 02455,","institution_ids":["https://openalex.org/I125608817"]},{"raw_affiliation_string":"School of Computational Sciences, Korea Institute for Advanced Study, Seoul 02455, Korea","institution_ids":["https://openalex.org/I125608817"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025114921","display_name":"Keehyoung Joo","orcid":"https://orcid.org/0000-0002-4612-0927"},"institutions":[{"id":"https://openalex.org/I125608817","display_name":"Korea Institute for Advanced Study","ror":"https://ror.org/041hz9568","country_code":"KR","type":"facility","lineage":["https://openalex.org/I125608817"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Keehyoung Joo","raw_affiliation_strings":["Center for Advanced Computation, Korea Institute for Advanced Study , Seoul 02455,","Center for Advanced Computation, Korea Institute for Advanced Study, Seoul 02455, Korea"],"affiliations":[{"raw_affiliation_string":"Center for Advanced Computation, Korea Institute for Advanced Study , Seoul 02455,","institution_ids":["https://openalex.org/I125608817"]},{"raw_affiliation_string":"Center for Advanced Computation, Korea Institute for Advanced Study, Seoul 02455, Korea","institution_ids":["https://openalex.org/I125608817"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5100362663"],"corresponding_institution_ids":["https://openalex.org/I848706"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.7371,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.75998518,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"41","issue":"11","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.8709999918937683},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.6079999804496765},{"id":"https://openalex.org/keywords/homology","display_name":"Homology (biology)","score":0.4966000020503998},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.4749000072479248},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.47360000014305115},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.44110000133514404},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.4277999997138977}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.8709999918937683},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7559000253677368},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.6079999804496765},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.510200023651123},{"id":"https://openalex.org/C165525559","wikidata":"https://www.wikidata.org/wiki/Q224180","display_name":"Homology (biology)","level":3,"score":0.4966000020503998},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.4749000072479248},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.47360000014305115},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.44110000133514404},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.4277999997138977},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4275999963283539},{"id":"https://openalex.org/C169627665","wikidata":"https://www.wikidata.org/wiki/Q5767913","display_name":"Homology modeling","level":3,"score":0.3953999876976013},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.38190001249313354},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.3409999907016754},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.31859999895095825},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3149999976158142},{"id":"https://openalex.org/C2984968299","wikidata":"https://www.wikidata.org/wiki/Q1077784","display_name":"Software tool","level":3,"score":0.29989999532699585},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.2906000018119812},{"id":"https://openalex.org/C66153294","wikidata":"https://www.wikidata.org/wiki/Q899291","display_name":"CASP","level":4,"score":0.2806999981403351},{"id":"https://openalex.org/C200307862","wikidata":"https://www.wikidata.org/wiki/Q7797175","display_name":"Threading (protein sequence)","level":3,"score":0.27720001339912415},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2628999948501587},{"id":"https://openalex.org/C111364199","wikidata":"https://www.wikidata.org/wiki/Q2915896","display_name":"Protein methods","level":4,"score":0.25440001487731934}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaf579","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf579","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/41/11/btaf579/64729797/btaf579.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41104652","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41104652","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:11408984","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12598648","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf579","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf579","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/41/11/btaf579/64729797/btaf579.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1451011034","display_name":null,"funder_award_id":"2021-II212068","funder_id":"https://openalex.org/F4320328359","funder_display_name":"Ministry of Science and ICT, South Korea"},{"id":"https://openalex.org/G4893661161","display_name":null,"funder_award_id":"RS-2023-00220628","funder_id":"https://openalex.org/F4320328359","funder_display_name":"Ministry of Science and ICT, South Korea"},{"id":"https://openalex.org/G5439187163","display_name":null,"funder_award_id":"RS-2021-II21206","funder_id":"https://openalex.org/F4320335489","funder_display_name":"Institute for Information and Communications Technology Promotion"},{"id":"https://openalex.org/G6072120315","display_name":null,"funder_award_id":"funded","funder_id":"https://openalex.org/F4320335489","funder_display_name":"Institute for Information and Communications Technology Promotion"},{"id":"https://openalex.org/G7575369263","display_name":null,"funder_award_id":"RS-2021-II212068","funder_id":"https://openalex.org/F4320335489","funder_display_name":"Institute for Information and Communications Technology Promotion"},{"id":"https://openalex.org/G7699972493","display_name":null,"funder_award_id":"RS-2021-II212068","funder_id":"https://openalex.org/F4320328359","funder_display_name":"Ministry of Science and ICT, South Korea"},{"id":"https://openalex.org/G8182824290","display_name":null,"funder_award_id":"RS-2023-00220628","funder_id":"https://openalex.org/F4320335489","funder_display_name":"Institute for Information and Communications Technology Promotion"}],"funders":[{"id":"https://openalex.org/F4320328359","display_name":"Ministry of Science and ICT, South Korea","ror":"https://ror.org/01wpjm123"},{"id":"https://openalex.org/F4320335489","display_name":"Institute for Information and Communications Technology Promotion","ror":"https://ror.org/01g0hqq23"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4415309441.pdf","grobid_xml":"https://content.openalex.org/works/W4415309441.grobid-xml"},"referenced_works_count":45,"referenced_works":["https://openalex.org/W2045204781","https://openalex.org/W2049349724","https://openalex.org/W2051210555","https://openalex.org/W2101220662","https://openalex.org/W2102461176","https://openalex.org/W2138122982","https://openalex.org/W2145268834","https://openalex.org/W2159500193","https://openalex.org/W2785722441","https://openalex.org/W2950954328","https://openalex.org/W2972411752","https://openalex.org/W3047171714","https://openalex.org/W3146944767","https://openalex.org/W3177828909","https://openalex.org/W3186179742","https://openalex.org/W3202105508","https://openalex.org/W3216341763","https://openalex.org/W4220824576","https://openalex.org/W4220887281","https://openalex.org/W4220990251","https://openalex.org/W4224325531","https://openalex.org/W4281790889","https://openalex.org/W4282984452","https://openalex.org/W4286500588","https://openalex.org/W4286669150","https://openalex.org/W4293475204","https://openalex.org/W4294719209","https://openalex.org/W4309506674","https://openalex.org/W4317802023","https://openalex.org/W4324308135","https://openalex.org/W4327550249","https://openalex.org/W4383216409","https://openalex.org/W4383313853","https://openalex.org/W4385263863","https://openalex.org/W4386496033","https://openalex.org/W4387451333","https://openalex.org/W4387559225","https://openalex.org/W4388982171","https://openalex.org/W4390590489","https://openalex.org/W4393342758","https://openalex.org/W4396721167","https://openalex.org/W4396895148","https://openalex.org/W4401463754","https://openalex.org/W4401900858","https://openalex.org/W4414335961"],"related_works":[],"abstract_inverted_index":{"Source":[0],"codes":[1],"and":[2],"user-friendly":[3],"Python":[4],"API":[5],"of":[6,9],"all":[7],"modules":[8],"DeepFold-PLM":[10],"publicly":[11],"available":[12],"at":[13],"https://github.com/DeepFoldProtein/DeepFold-PLM.":[14]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-04-17T18:11:37.981687","created_date":"2025-10-18T00:00:00"}