{"id":"https://openalex.org/W4414861110","doi":"https://doi.org/10.1093/bioinformatics/btaf553","title":"NOODAI: a webserver for network-oriented multi-omics data analysis and integration pipeline","display_name":"NOODAI: a webserver for network-oriented multi-omics data analysis and integration pipeline","publication_year":2025,"publication_date":"2025-10-02","ids":{"openalex":"https://openalex.org/W4414861110","doi":"https://doi.org/10.1093/bioinformatics/btaf553","pmid":"https://pubmed.ncbi.nlm.nih.gov/41051225"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf553","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf553","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf553/64518930/btaf553.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf553/64518930/btaf553.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5012465506","display_name":"Tiberiu Totu","orcid":"https://orcid.org/0000-0001-8268-1740"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I2799323385","display_name":"Board of the Swiss Federal Institutes of Technology","ror":"https://ror.org/01rvn4p91","country_code":"CH","type":"government","lineage":["https://openalex.org/I2799323385"]},{"id":"https://openalex.org/I71824836","display_name":"Swiss Federal Laboratories for Materials Science and Technology","ror":"https://ror.org/02x681a42","country_code":"CH","type":"facility","lineage":["https://openalex.org/I2799323385","https://openalex.org/I71824836"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Tiberiu Totu","raw_affiliation_strings":["Department of Health Sciences and Technology, Eidgen\u00f6ssische Technische Hochschule Z\u00fcrich (ETH) , 8092 Zurich,","Nanomaterials in Health Laboratory, Swiss Federal Laboratories for Materials Science and Technology (Empa) , 9014 St. Gallen,","Swiss Institute of Bioinformatics (SIB) , 1015 Lausanne,","Eidgen\u00f6ssische Technische Hochschule Z\u00fcrich (ETH) Department of Health Sciences and Technology, , Zurich,","Swiss Federal Laboratories for Materials Science and Technology (Empa) Nanomaterials in Health Laboratory, , St. Gallen,","Swiss Institute of Bioinformatics (SIB) , Lausanne,"],"affiliations":[{"raw_affiliation_string":"Department of Health Sciences and Technology, Eidgen\u00f6ssische Technische Hochschule Z\u00fcrich (ETH) , 8092 Zurich,","institution_ids":["https://openalex.org/I2799323385"]},{"raw_affiliation_string":"Nanomaterials in Health Laboratory, Swiss Federal Laboratories for Materials Science and Technology (Empa) , 9014 St. Gallen,","institution_ids":["https://openalex.org/I71824836"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics (SIB) , 1015 Lausanne,","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"Eidgen\u00f6ssische Technische Hochschule Z\u00fcrich (ETH) Department of Health Sciences and Technology, , Zurich,","institution_ids":["https://openalex.org/I2799323385"]},{"raw_affiliation_string":"Swiss Federal Laboratories for Materials Science and Technology (Empa) Nanomaterials in Health Laboratory, , St. Gallen,","institution_ids":["https://openalex.org/I71824836"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics (SIB) , Lausanne,","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039324985","display_name":"Rafael Riudavets Puig","orcid":"https://orcid.org/0000-0002-2855-9952"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I71824836","display_name":"Swiss Federal Laboratories for Materials Science and Technology","ror":"https://ror.org/02x681a42","country_code":"CH","type":"facility","lineage":["https://openalex.org/I2799323385","https://openalex.org/I71824836"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Rafael Riudavets Puig","raw_affiliation_strings":["Nanomaterials in Health Laboratory, Swiss Federal Laboratories for Materials Science and Technology (Empa) , 9014 St. Gallen,","Swiss Institute of Bioinformatics (SIB) , 1015 Lausanne,","Swiss Federal Laboratories for Materials Science and Technology (Empa) Nanomaterials in Health Laboratory, , St. Gallen,","Swiss Institute of Bioinformatics (SIB) , Lausanne,"],"affiliations":[{"raw_affiliation_string":"Nanomaterials in Health Laboratory, Swiss Federal Laboratories for Materials Science and Technology (Empa) , 9014 St. Gallen,","institution_ids":["https://openalex.org/I71824836"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics (SIB) , 1015 Lausanne,","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"Swiss Federal Laboratories for Materials Science and Technology (Empa) Nanomaterials in Health Laboratory, , St. Gallen,","institution_ids":["https://openalex.org/I71824836"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics (SIB) , Lausanne,","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049880652","display_name":"Lukas Hauser","orcid":null},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I2799323385","display_name":"Board of the Swiss Federal Institutes of Technology","ror":"https://ror.org/01rvn4p91","country_code":"CH","type":"government","lineage":["https://openalex.org/I2799323385"]},{"id":"https://openalex.org/I71824836","display_name":"Swiss Federal Laboratories for Materials Science and Technology","ror":"https://ror.org/02x681a42","country_code":"CH","type":"facility","lineage":["https://openalex.org/I2799323385","https://openalex.org/I71824836"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Lukas Jonathan H\u00e4user","raw_affiliation_strings":["Department of Health Sciences and Technology, Eidgen\u00f6ssische Technische Hochschule Z\u00fcrich (ETH) , 8092 Zurich,","Nanomaterials in Health Laboratory, Swiss Federal Laboratories for Materials Science and Technology (Empa) , 9014 St. Gallen,","Swiss Institute of Bioinformatics (SIB) , 1015 Lausanne,","Swiss Institute of Bioinformatics (SIB) , Lausanne,","Swiss Federal Laboratories for Materials Science and Technology (Empa) Nanomaterials in Health Laboratory, , St. Gallen,","Eidgen\u00f6ssische Technische Hochschule Z\u00fcrich (ETH) Department of Health Sciences and Technology, , Zurich,"],"affiliations":[{"raw_affiliation_string":"Department of Health Sciences and Technology, Eidgen\u00f6ssische Technische Hochschule Z\u00fcrich (ETH) , 8092 Zurich,","institution_ids":["https://openalex.org/I2799323385"]},{"raw_affiliation_string":"Nanomaterials in Health Laboratory, Swiss Federal Laboratories for Materials Science and Technology (Empa) , 9014 St. Gallen,","institution_ids":["https://openalex.org/I71824836"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics (SIB) , 1015 Lausanne,","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics (SIB) , Lausanne,","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"Swiss Federal Laboratories for Materials Science and Technology (Empa) Nanomaterials in Health Laboratory, , St. Gallen,","institution_ids":["https://openalex.org/I71824836"]},{"raw_affiliation_string":"Eidgen\u00f6ssische Technische Hochschule Z\u00fcrich (ETH) Department of Health Sciences and Technology, , Zurich,","institution_ids":["https://openalex.org/I2799323385"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060278610","display_name":"Mattia Tomasoni","orcid":"https://orcid.org/0000-0001-8775-2384"},"institutions":[{"id":"https://openalex.org/I4210124413","display_name":"Fondation Asile des Aveugles","ror":"https://ror.org/03821ge86","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I4210124413"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Mattia Tomasoni","raw_affiliation_strings":["Department of Ophthalmology, University of Lausanne, Fondation Asile des Aveugles, Jules Gonin Eye Hospital , 1004 Lausanne,","Platform for Research in Ocular Imaging, Fondation Asile des Aveugles, Jules Gonin Eye Hospital , 1004 Lausanne,","University of Lausanne, Fondation Asile des Aveugles, Jules Gonin Eye Hospital Department of Ophthalmology, , Lausanne,"],"affiliations":[{"raw_affiliation_string":"Department of Ophthalmology, University of Lausanne, Fondation Asile des Aveugles, Jules Gonin Eye Hospital , 1004 Lausanne,","institution_ids":["https://openalex.org/I4210124413"]},{"raw_affiliation_string":"Platform for Research in Ocular Imaging, Fondation Asile des Aveugles, Jules Gonin Eye Hospital , 1004 Lausanne,","institution_ids":["https://openalex.org/I4210124413"]},{"raw_affiliation_string":"University of Lausanne, Fondation Asile des Aveugles, Jules Gonin Eye Hospital Department of Ophthalmology, , Lausanne,","institution_ids":["https://openalex.org/I4210124413"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020733835","display_name":"Hella Anna Bolck","orcid":"https://orcid.org/0000-0001-5157-0490"},"institutions":[{"id":"https://openalex.org/I200744771","display_name":"ZHAW Zurich University of Applied Sciences","ror":null,"country_code":"CH","type":null,"lineage":["https://openalex.org/I200744771"]},{"id":"https://openalex.org/I4210100468","display_name":"University Hospital of Zurich","ror":"https://ror.org/01462r250","country_code":"CH","type":"funder","lineage":["https://openalex.org/I4210100468"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Hella Anna Bolck","raw_affiliation_strings":["Centre for AI, School of Engineering, Zurich University of Applied Sciences (ZHAW) , 8400 Winterthur,","Department of Pathology and Molecular Pathology, University of Zurich and University Hospital Zurich , 8091 Z\u00fcrich,","University of Zurich and University Hospital Zurich Department of Pathology and Molecular Pathology, , Z\u00fcrich,","Zurich University of Applied Sciences (ZHAW) Centre for AI, School of Engineering, , Winterthur,"],"affiliations":[{"raw_affiliation_string":"Centre for AI, School of Engineering, Zurich University of Applied Sciences (ZHAW) , 8400 Winterthur,","institution_ids":["https://openalex.org/I200744771"]},{"raw_affiliation_string":"Department of Pathology and Molecular Pathology, University of Zurich and University Hospital Zurich , 8091 Z\u00fcrich,","institution_ids":["https://openalex.org/I4210100468"]},{"raw_affiliation_string":"University of Zurich and University Hospital Zurich Department of Pathology and Molecular Pathology, , Z\u00fcrich,","institution_ids":["https://openalex.org/I4210100468"]},{"raw_affiliation_string":"Zurich University of Applied Sciences (ZHAW) Centre for AI, School of Engineering, , Winterthur,","institution_ids":["https://openalex.org/I200744771"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5110325006","display_name":"Marija Buljan","orcid":null},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I71824836","display_name":"Swiss Federal Laboratories for Materials Science and Technology","ror":"https://ror.org/02x681a42","country_code":"CH","type":"facility","lineage":["https://openalex.org/I2799323385","https://openalex.org/I71824836"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Marija Buljan","raw_affiliation_strings":["Nanomaterials in Health Laboratory, Swiss Federal Laboratories for Materials Science and Technology (Empa) , 9014 St. Gallen,","Swiss Institute of Bioinformatics (SIB) , 1015 Lausanne,","Swiss Institute of Bioinformatics (SIB) , Lausanne,","Swiss Federal Laboratories for Materials Science and Technology (Empa) Nanomaterials in Health Laboratory, , St. Gallen,"],"affiliations":[{"raw_affiliation_string":"Nanomaterials in Health Laboratory, Swiss Federal Laboratories for Materials Science and Technology (Empa) , 9014 St. Gallen,","institution_ids":["https://openalex.org/I71824836"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics (SIB) , 1015 Lausanne,","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics (SIB) , Lausanne,","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"Swiss Federal Laboratories for Materials Science and Technology (Empa) Nanomaterials in Health Laboratory, , St. Gallen,","institution_ids":["https://openalex.org/I71824836"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5012465506"],"corresponding_institution_ids":["https://openalex.org/I12708293","https://openalex.org/I2799323385","https://openalex.org/I71824836"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.24763446,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"41","issue":"11","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9853000044822693,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.7041000127792358},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.6279000043869019},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.5394999980926514},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.45190000534057617},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4284999966621399},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.35740000009536743}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8108000159263611},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.7041000127792358},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.6279000043869019},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.5394999980926514},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5149000287055969},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.45190000534057617},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4284999966621399},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.4117000102996826},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.3781999945640564},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.35740000009536743},{"id":"https://openalex.org/C2983685735","wikidata":"https://www.wikidata.org/wiki/Q5227355","display_name":"Data source","level":2,"score":0.3569999933242798},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32760000228881836},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.3246000111103058},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.30979999899864197},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.3077999949455261},{"id":"https://openalex.org/C93996380","wikidata":"https://www.wikidata.org/wiki/Q44127","display_name":"Server","level":2,"score":0.3000999987125397},{"id":"https://openalex.org/C175309249","wikidata":"https://www.wikidata.org/wiki/Q725864","display_name":"Pipeline transport","level":2,"score":0.28630000352859497},{"id":"https://openalex.org/C105446022","wikidata":"https://www.wikidata.org/wiki/Q445962","display_name":"Legacy system","level":3,"score":0.25850000977516174}],"mesh":[{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/btaf553","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf553","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf553/64518930/btaf553.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41051225","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41051225","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:dora:empa_43171","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306401298","display_name":"DORA Empa (Swiss Federal Laboratories for Materials Science and Technology (Empa))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71824836","host_organization_name":"Swiss Federal Laboratories for Materials Science and Technology","host_organization_lineage":["https://openalex.org/I71824836"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:iris.unil.ch:iris/276428","is_oa":true,"landing_page_url":"https://iris.unil.ch/handle/iris/276428","pdf_url":"https://iris.unil.ch/bitstreams/094c8abd-b21a-47db-ba61-af6824e67105/download","source":{"id":"https://openalex.org/S7407055444","display_name":"IRIS","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"research article"},{"id":"pmh:oai:digitalcollection.zhaw.ch:11475/34430","is_oa":true,"landing_page_url":"https://hdl.handle.net/11475/34430","pdf_url":null,"source":{"id":"https://openalex.org/S4306401810","display_name":"Z\u00fcrcher Hochschule f\u00fcr Angewandte Wissenschaften digital collection (Zurich University of Applied Sciences)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I200744771","host_organization_name":"ZHAW Zurich University of Applied Sciences","host_organization_lineage":["https://openalex.org/I200744771"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:europepmc.org:11391416","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12582364","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf553","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf553","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf553/64518930/btaf553.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320329825","display_name":"Uniscientia Foundation","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4414861110.pdf","grobid_xml":"https://content.openalex.org/works/W4414861110.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W1966327575","https://openalex.org/W1976702945","https://openalex.org/W1987219048","https://openalex.org/W2023461603","https://openalex.org/W2075255984","https://openalex.org/W2096918186","https://openalex.org/W2150318080","https://openalex.org/W2154897810","https://openalex.org/W2170376772","https://openalex.org/W2242206668","https://openalex.org/W2338223499","https://openalex.org/W2729359440","https://openalex.org/W2808845633","https://openalex.org/W2900569176","https://openalex.org/W2950130264","https://openalex.org/W2950985821","https://openalex.org/W2970771711","https://openalex.org/W3003192283","https://openalex.org/W3015766895","https://openalex.org/W3093053585","https://openalex.org/W3163279211","https://openalex.org/W3165414213","https://openalex.org/W3173875945","https://openalex.org/W3212342036","https://openalex.org/W4200485205","https://openalex.org/W4226152036","https://openalex.org/W4282939468","https://openalex.org/W4383815650","https://openalex.org/W4388539829","https://openalex.org/W4409788561"],"related_works":[],"abstract_inverted_index":{"NOODAI":[0],"is":[1,8],"freely":[2],"accessible":[3],"at":[4],"https://omics-oracle.com.":[5],"Source":[6],"code":[7],"available":[9],"under":[10],"GPL3":[11],"at:":[12],"https://github.com/TotuTiberiu/NOODAI":[13],"with":[14],"the":[15],"DOI:":[16],"10.5281/zenodo.17203984.":[17]},"counts_by_year":[],"updated_date":"2026-03-27T14:29:43.386196","created_date":"2025-10-10T00:00:00"}
