{"id":"https://openalex.org/W4409317833","doi":"https://doi.org/10.1093/bioinformatics/btaf158","title":"PyEvoCell: an LLM-augmented single-cell trajectory analysis dashboard","display_name":"PyEvoCell: an LLM-augmented single-cell trajectory analysis dashboard","publication_year":2025,"publication_date":"2025-03-29","ids":{"openalex":"https://openalex.org/W4409317833","doi":"https://doi.org/10.1093/bioinformatics/btaf158","pmid":"https://pubmed.ncbi.nlm.nih.gov/40209077"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf158","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf158","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf158/62906682/btaf158.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf158/62906682/btaf158.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Sachin Mathur","orcid":"https://orcid.org/0009-0008-9899-0458"},"institutions":[{"id":"https://openalex.org/I3018075036","display_name":"Sanofi (France)","ror":"https://ror.org/02n6c9837","country_code":"FR","type":"company","lineage":["https://openalex.org/I3018075036"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Sachin Mathur","raw_affiliation_strings":["R&D Data and Computational Sciences, Sanofi , Cambridge, MA 02141,","Sanofi R&D Data and Computational Sciences, , Cambridge, MA 02141,"],"affiliations":[{"raw_affiliation_string":"R&D Data and Computational Sciences, Sanofi , Cambridge, MA 02141,","institution_ids":["https://openalex.org/I3018075036"]},{"raw_affiliation_string":"Sanofi R&D Data and Computational Sciences, , Cambridge, MA 02141,","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069059147","display_name":"Mathieu Beauvais","orcid":null},"institutions":[{"id":"https://openalex.org/I3018075036","display_name":"Sanofi (France)","ror":"https://ror.org/02n6c9837","country_code":"FR","type":"company","lineage":["https://openalex.org/I3018075036"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Mathieu Beauvais","raw_affiliation_strings":["R&D Data and Computational Sciences, Sanofi , Gentilly 94255,","Sanofi R&D Data and Computational Sciences, , Gentilly, 94255,"],"affiliations":[{"raw_affiliation_string":"R&D Data and Computational Sciences, Sanofi , Gentilly 94255,","institution_ids":["https://openalex.org/I3018075036"]},{"raw_affiliation_string":"Sanofi R&D Data and Computational Sciences, , Gentilly, 94255,","institution_ids":["https://openalex.org/I3018075036"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5117095807","display_name":"Arnau Giribet","orcid":null},"institutions":[{"id":"https://openalex.org/I4210093939","display_name":"Sanofi (Spain)","ror":"https://ror.org/00g51ew42","country_code":"ES","type":"company","lineage":["https://openalex.org/I3018075036","https://openalex.org/I4210093939"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Arnau Giribet","raw_affiliation_strings":["R&D Data and Computational Sciences, Sanofi , Barcelona 08019,","Sanofi R&D Data and Computational Sciences, , Barcelona, 08019,"],"affiliations":[{"raw_affiliation_string":"R&D Data and Computational Sciences, Sanofi , Barcelona 08019,","institution_ids":["https://openalex.org/I4210093939"]},{"raw_affiliation_string":"Sanofi R&D Data and Computational Sciences, , Barcelona, 08019,","institution_ids":["https://openalex.org/I4210093939"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5117095808","display_name":"Nicolas Aragon Barrero","orcid":null},"institutions":[{"id":"https://openalex.org/I4210093939","display_name":"Sanofi (Spain)","ror":"https://ror.org/00g51ew42","country_code":"ES","type":"company","lineage":["https://openalex.org/I3018075036","https://openalex.org/I4210093939"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Nicolas Aragon Barrero","raw_affiliation_strings":["R&D Data and Computational Sciences, Sanofi , Barcelona 08019,","Sanofi R&D Data and Computational Sciences, , Barcelona, 08019,"],"affiliations":[{"raw_affiliation_string":"R&D Data and Computational Sciences, Sanofi , Barcelona 08019,","institution_ids":["https://openalex.org/I4210093939"]},{"raw_affiliation_string":"Sanofi R&D Data and Computational Sciences, , Barcelona, 08019,","institution_ids":["https://openalex.org/I4210093939"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057263242","display_name":"C. Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I3018075036","display_name":"Sanofi (France)","ror":"https://ror.org/02n6c9837","country_code":"FR","type":"company","lineage":["https://openalex.org/I3018075036"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Chaorui-Tom Zhang","raw_affiliation_strings":["R&D Data and Computational Sciences, Sanofi , Toronto, ON M5V 1V6,","Sanofi R&D Data and Computational Sciences, , Toronto, Ontario M5V 1V6,"],"affiliations":[{"raw_affiliation_string":"R&D Data and Computational Sciences, Sanofi , Toronto, ON M5V 1V6,","institution_ids":["https://openalex.org/I3018075036"]},{"raw_affiliation_string":"Sanofi R&D Data and Computational Sciences, , Toronto, Ontario M5V 1V6,","institution_ids":["https://openalex.org/I3018075036"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049635234","display_name":"Tawfiqur Rahman","orcid":"https://orcid.org/0000-0002-4919-2782"},"institutions":[{"id":"https://openalex.org/I3018075036","display_name":"Sanofi (France)","ror":"https://ror.org/02n6c9837","country_code":"FR","type":"company","lineage":["https://openalex.org/I3018075036"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Towsif Rahman","raw_affiliation_strings":["R&D Data and Computational Sciences, Sanofi , Toronto, ON M5V 1V6,","Sanofi R&D Data and Computational Sciences, , Toronto, Ontario M5V 1V6,"],"affiliations":[{"raw_affiliation_string":"R&D Data and Computational Sciences, Sanofi , Toronto, ON M5V 1V6,","institution_ids":["https://openalex.org/I3018075036"]},{"raw_affiliation_string":"Sanofi R&D Data and Computational Sciences, , Toronto, Ontario M5V 1V6,","institution_ids":["https://openalex.org/I3018075036"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113339754","display_name":"Seqian Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I3018075036","display_name":"Sanofi (France)","ror":"https://ror.org/02n6c9837","country_code":"FR","type":"company","lineage":["https://openalex.org/I3018075036"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Seqian Wang","raw_affiliation_strings":["R&D Data and Computational Sciences, Sanofi , Toronto, ON M5V 1V6,","Sanofi R&D Data and Computational Sciences, , Toronto, Ontario M5V 1V6,"],"affiliations":[{"raw_affiliation_string":"R&D Data and Computational Sciences, Sanofi , Toronto, ON M5V 1V6,","institution_ids":["https://openalex.org/I3018075036"]},{"raw_affiliation_string":"Sanofi R&D Data and Computational Sciences, , Toronto, Ontario M5V 1V6,","institution_ids":["https://openalex.org/I3018075036"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088776329","display_name":"J. C. Huang","orcid":"https://orcid.org/0000-0002-4750-1246"},"institutions":[{"id":"https://openalex.org/I4210116328","display_name":"Precision for Medicine (United States)","ror":"https://ror.org/02eps3588","country_code":"US","type":"company","lineage":["https://openalex.org/I4210116328"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeremy Huang","raw_affiliation_strings":["Precision Medicine Computational Biology, Sanofi , Cambridge, MA 02141,","Sanofi Precision Medicine Computational Biology, , Cambridge, MA 02141"],"affiliations":[{"raw_affiliation_string":"Precision Medicine Computational Biology, Sanofi , Cambridge, MA 02141,","institution_ids":["https://openalex.org/I4210116328"]},{"raw_affiliation_string":"Sanofi Precision Medicine Computational Biology, , Cambridge, MA 02141","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062082296","display_name":"Nima Nouri","orcid":"https://orcid.org/0000-0001-8348-5717"},"institutions":[{"id":"https://openalex.org/I4210116328","display_name":"Precision for Medicine (United States)","ror":"https://ror.org/02eps3588","country_code":"US","type":"company","lineage":["https://openalex.org/I4210116328"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nima Nouri","raw_affiliation_strings":["Precision Medicine Computational Biology, Sanofi , Cambridge, MA 02141,","Sanofi Precision Medicine Computational Biology, , Cambridge, MA 02141"],"affiliations":[{"raw_affiliation_string":"Precision Medicine Computational Biology, Sanofi , Cambridge, MA 02141,","institution_ids":["https://openalex.org/I4210116328"]},{"raw_affiliation_string":"Sanofi Precision Medicine Computational Biology, , Cambridge, MA 02141","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053549697","display_name":"Andre Kurlovs","orcid":null},"institutions":[{"id":"https://openalex.org/I4210116328","display_name":"Precision for Medicine (United States)","ror":"https://ror.org/02eps3588","country_code":"US","type":"company","lineage":["https://openalex.org/I4210116328"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andre Kurlovs","raw_affiliation_strings":["Precision Medicine Computational Biology, Sanofi , Cambridge, MA 02141,","Sanofi Precision Medicine Computational Biology, , Cambridge, MA 02141"],"affiliations":[{"raw_affiliation_string":"Precision Medicine Computational Biology, Sanofi , Cambridge, MA 02141,","institution_ids":["https://openalex.org/I4210116328"]},{"raw_affiliation_string":"Sanofi Precision Medicine Computational Biology, , Cambridge, MA 02141","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065673127","display_name":"Ziv Bar\u2010Joseph","orcid":"https://orcid.org/0000-0003-3430-6051"},"institutions":[{"id":"https://openalex.org/I3018075036","display_name":"Sanofi (France)","ror":"https://ror.org/02n6c9837","country_code":"FR","type":"company","lineage":["https://openalex.org/I3018075036"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Ziv Bar-Joseph","raw_affiliation_strings":["R&D Data and Computational Sciences, Sanofi , Cambridge, MA 02141,","Sanofi R&D Data and Computational Sciences, , Cambridge, MA 02141,"],"affiliations":[{"raw_affiliation_string":"R&D Data and Computational Sciences, Sanofi , Cambridge, MA 02141,","institution_ids":["https://openalex.org/I3018075036"]},{"raw_affiliation_string":"Sanofi R&D Data and Computational Sciences, , Cambridge, MA 02141,","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5114756137","display_name":"Peyman Passban","orcid":null},"institutions":[{"id":"https://openalex.org/I3018075036","display_name":"Sanofi (France)","ror":"https://ror.org/02n6c9837","country_code":"FR","type":"company","lineage":["https://openalex.org/I3018075036"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Peyman Passban","raw_affiliation_strings":["R&D Data and Computational Sciences, Sanofi , Toronto, ON M5V 1V6,","Sanofi R&D Data and Computational Sciences, , Toronto, Ontario M5V 1V6,"],"affiliations":[{"raw_affiliation_string":"R&D Data and Computational Sciences, Sanofi , Toronto, ON M5V 1V6,","institution_ids":["https://openalex.org/I3018075036"]},{"raw_affiliation_string":"Sanofi R&D Data and Computational Sciences, , Toronto, Ontario M5V 1V6,","institution_ids":["https://openalex.org/I3018075036"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":12,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I3018075036"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.0619079,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"41","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9907000064849854,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.989799976348877,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.831287145614624},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.698957085609436},{"id":"https://openalex.org/keywords/trajectory","display_name":"Trajectory","score":0.6771705150604248},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4887687861919403},{"id":"https://openalex.org/keywords/filter","display_name":"Filter (signal processing)","score":0.43679165840148926},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.43672502040863037},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.42155390977859497},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.42092639207839966},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.41264042258262634},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.37463027238845825},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.17188945412635803},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.084827721118927}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.831287145614624},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.698957085609436},{"id":"https://openalex.org/C13662910","wikidata":"https://www.wikidata.org/wiki/Q193139","display_name":"Trajectory","level":2,"score":0.6771705150604248},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4887687861919403},{"id":"https://openalex.org/C106131492","wikidata":"https://www.wikidata.org/wiki/Q3072260","display_name":"Filter (signal processing)","level":2,"score":0.43679165840148926},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.43672502040863037},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.42155390977859497},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.42092639207839966},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.41264042258262634},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.37463027238845825},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.17188945412635803},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.084827721118927},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C1276947","wikidata":"https://www.wikidata.org/wiki/Q333","display_name":"Astronomy","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaf158","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf158","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf158/62906682/btaf158.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40209077","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40209077","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12014098","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12014098","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf158","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf158","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf158/62906682/btaf158.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320307781","display_name":"Sanofi","ror":"https://ror.org/027vj4x92"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4409317833.pdf","grobid_xml":"https://content.openalex.org/works/W4409317833.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W1984883254","https://openalex.org/W2130410032","https://openalex.org/W2132992030","https://openalex.org/W2927507212","https://openalex.org/W2948104182","https://openalex.org/W2999810289","https://openalex.org/W4293783808","https://openalex.org/W4294586748","https://openalex.org/W4309944312","https://openalex.org/W4386463918","https://openalex.org/W4399387478","https://openalex.org/W4399608272"],"related_works":["https://openalex.org/W2046765700","https://openalex.org/W2780629932","https://openalex.org/W4384345686","https://openalex.org/W2357937784","https://openalex.org/W2547618384","https://openalex.org/W4394391052","https://openalex.org/W2145834781","https://openalex.org/W2577782152","https://openalex.org/W262455470","https://openalex.org/W4242899858"],"abstract_inverted_index":{"The":[0],"software":[1],"is":[2],"available":[3],"at":[4],"https://github.com/Sanofi-Public/PyEvoCell.":[5],"It":[6],"contains":[7],"installation":[8],"instructions,":[9],"user":[10],"manual,":[11],"demo":[12],"datasets,":[13],"as":[14,16],"well":[15],"license":[17],"conditions.":[18],"https://doi.org/10.5281/zenodo.15114803.":[19]},"counts_by_year":[],"updated_date":"2026-04-17T18:11:37.981687","created_date":"2025-10-10T00:00:00"}
