{"id":"https://openalex.org/W4408346118","doi":"https://doi.org/10.1093/bioinformatics/btaf103","title":"UnifiedGreatMod: a new holistic modelling paradigm for studying biological systems on a complete and harmonious scale","display_name":"UnifiedGreatMod: a new holistic modelling paradigm for studying biological systems on a complete and harmonious scale","publication_year":2025,"publication_date":"2025-03-01","ids":{"openalex":"https://openalex.org/W4408346118","doi":"https://doi.org/10.1093/bioinformatics/btaf103","pmid":"https://pubmed.ncbi.nlm.nih.gov/40073274"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf103","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf103","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf103/62387315/btaf103.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf103/62387315/btaf103.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5107527001","display_name":"Riccardo Aucello","orcid":null},"institutions":[{"id":"https://openalex.org/I4210095558","display_name":"5T Torino (Italy)","ror":"https://ror.org/00k7znw93","country_code":"IT","type":"company","lineage":["https://openalex.org/I4210095558"]},{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Riccardo Aucello","raw_affiliation_strings":["Department of Computer Science, University of Turin , Via Pessinetto 12 , Torino, 10149,","Department of Computer Science, University of Turin, Torino, 10123, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Turin , Via Pessinetto 12 , Torino, 10149,","institution_ids":["https://openalex.org/I55143463","https://openalex.org/I4210095558"]},{"raw_affiliation_string":"Department of Computer Science, University of Turin, Torino, 10123, Italy","institution_ids":["https://openalex.org/I55143463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082219669","display_name":"Simone Pernice","orcid":"https://orcid.org/0000-0001-7124-4676"},"institutions":[{"id":"https://openalex.org/I4210095558","display_name":"5T Torino (Italy)","ror":"https://ror.org/00k7znw93","country_code":"IT","type":"company","lineage":["https://openalex.org/I4210095558"]},{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Simone Pernice","raw_affiliation_strings":["Department of Computer Science, University of Turin , Via Pessinetto 12 , Torino, 10149,","Department of Computer Science, University of Turin, Torino, 10123, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Turin , Via Pessinetto 12 , Torino, 10149,","institution_ids":["https://openalex.org/I55143463","https://openalex.org/I4210095558"]},{"raw_affiliation_string":"Department of Computer Science, University of Turin, Torino, 10123, Italy","institution_ids":["https://openalex.org/I55143463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080261896","display_name":"Dora Tortarolo","orcid":"https://orcid.org/0000-0002-0897-0269"},"institutions":[{"id":"https://openalex.org/I4210095558","display_name":"5T Torino (Italy)","ror":"https://ror.org/00k7znw93","country_code":"IT","type":"company","lineage":["https://openalex.org/I4210095558"]},{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Dora Tortarolo","raw_affiliation_strings":["Department of Computer Science, University of Turin , Via Pessinetto 12 , Torino, 10149,","Department of Computer Science, University of Turin, Torino, 10123, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Turin , Via Pessinetto 12 , Torino, 10149,","institution_ids":["https://openalex.org/I55143463","https://openalex.org/I4210095558"]},{"raw_affiliation_string":"Department of Computer Science, University of Turin, Torino, 10123, Italy","institution_ids":["https://openalex.org/I55143463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025014550","display_name":"Raffaele Calogero","orcid":"https://orcid.org/0000-0002-2848-628X"},"institutions":[{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Raffaele A Calogero","raw_affiliation_strings":["Department of Molecular Biotechnology and Health Sciences, University of Torino , Via Nizza 52 , Torino, 10126,","Department of Molecular Biotechnology and Health Sciences, University of Torino, Torino, 10126, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Biotechnology and Health Sciences, University of Torino , Via Nizza 52 , Torino, 10126,","institution_ids":["https://openalex.org/I55143463"]},{"raw_affiliation_string":"Department of Molecular Biotechnology and Health Sciences, University of Torino, Torino, 10126, Italy","institution_ids":["https://openalex.org/I55143463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109786661","display_name":"Celia Herrera-Rincon","orcid":null},"institutions":[{"id":"https://openalex.org/I121748325","display_name":"Universidad Complutense de Madrid","ror":"https://ror.org/02p0gd045","country_code":"ES","type":"education","lineage":["https://openalex.org/I121748325"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Celia Herrera-Rincon","raw_affiliation_strings":["Biomathematics Unit, Department of Biodiversity, Ecology and Evolution, Complutense University of Madrid , Madrid 28040,","Department of Biodiversity, Ecology and Evolution, Biomathematics Unit, Complutense University of Madrid, Madrid, 28040, Spain"],"affiliations":[{"raw_affiliation_string":"Biomathematics Unit, Department of Biodiversity, Ecology and Evolution, Complutense University of Madrid , Madrid 28040,","institution_ids":["https://openalex.org/I121748325"]},{"raw_affiliation_string":"Department of Biodiversity, Ecology and Evolution, Biomathematics Unit, Complutense University of Madrid, Madrid, 28040, Spain","institution_ids":["https://openalex.org/I121748325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038206584","display_name":"Giulia Ronchi","orcid":"https://orcid.org/0000-0002-4795-7024"},"institutions":[{"id":"https://openalex.org/I4210155833","display_name":"Ospedale San Luigi Gonzaga","ror":"https://ror.org/04nzv4p86","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210155833"]},{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giulia Ronchi","raw_affiliation_strings":["Department of Clinical and Biological Sciences, University of Torino , Regione Gonzole 10 , Orbassano, 10143,","Department of Clinical and Biological Sciences, University of Torino, Orbassano, 10143, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Clinical and Biological Sciences, University of Torino , Regione Gonzole 10 , Orbassano, 10143,","institution_ids":["https://openalex.org/I4210155833"]},{"raw_affiliation_string":"Department of Clinical and Biological Sciences, University of Torino, Orbassano, 10143, Italy","institution_ids":["https://openalex.org/I55143463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006446931","display_name":"Stefano Geuna","orcid":"https://orcid.org/0000-0002-6962-831X"},"institutions":[{"id":"https://openalex.org/I4210155833","display_name":"Ospedale San Luigi Gonzaga","ror":"https://ror.org/04nzv4p86","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210155833"]},{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Stefano Geuna","raw_affiliation_strings":["Department of Clinical and Biological Sciences, University of Torino , Regione Gonzole 10 , Orbassano, 10143,","Department of Clinical and Biological Sciences, University of Torino, Orbassano, 10143, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Clinical and Biological Sciences, University of Torino , Regione Gonzole 10 , Orbassano, 10143,","institution_ids":["https://openalex.org/I4210155833"]},{"raw_affiliation_string":"Department of Clinical and Biological Sciences, University of Torino, Orbassano, 10143, Italy","institution_ids":["https://openalex.org/I55143463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064773200","display_name":"Francesca Cordero","orcid":"https://orcid.org/0000-0002-3143-3330"},"institutions":[{"id":"https://openalex.org/I4210095558","display_name":"5T Torino (Italy)","ror":"https://ror.org/00k7znw93","country_code":"IT","type":"company","lineage":["https://openalex.org/I4210095558"]},{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Francesca Cordero","raw_affiliation_strings":["Department of Computer Science, University of Turin , Via Pessinetto 12 , Torino, 10149,","Department of Computer Science, University of Turin, Torino, 10123, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Turin , Via Pessinetto 12 , Torino, 10149,","institution_ids":["https://openalex.org/I55143463","https://openalex.org/I4210095558"]},{"raw_affiliation_string":"Department of Computer Science, University of Turin, Torino, 10123, Italy","institution_ids":["https://openalex.org/I55143463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056748708","display_name":"P\u00edetro Li\u00f3","orcid":"https://orcid.org/0000-0002-0540-5053"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]},{"id":"https://openalex.org/I4210096386","display_name":"Bridge University","ror":"https://ror.org/00cbm0437","country_code":"SS","type":"education","lineage":["https://openalex.org/I4210096386"]}],"countries":["GB","SS"],"is_corresponding":false,"raw_author_name":"Pietro Li\u00f3","raw_affiliation_strings":["Department of Computer Science and Technology, University of Cambridge , Cambridge CB3 0FD,","Department of Computer Science and Technology, University of Cambridge, Cambridge, CB3 0FD, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, University of Cambridge , Cambridge CB3 0FD,","institution_ids":["https://openalex.org/I241749","https://openalex.org/I4210096386"]},{"raw_affiliation_string":"Department of Computer Science and Technology, University of Cambridge, Cambridge, CB3 0FD, United Kingdom","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002392135","display_name":"Marco Beccuti","orcid":"https://orcid.org/0000-0001-6125-9460"},"institutions":[{"id":"https://openalex.org/I4210095558","display_name":"5T Torino (Italy)","ror":"https://ror.org/00k7znw93","country_code":"IT","type":"company","lineage":["https://openalex.org/I4210095558"]},{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marco Beccuti","raw_affiliation_strings":["Department of Computer Science, University of Turin , Via Pessinetto 12 , Torino, 10149,","Department of Computer Science, University of Turin, Torino, 10123, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Turin , Via Pessinetto 12 , Torino, 10149,","institution_ids":["https://openalex.org/I55143463","https://openalex.org/I4210095558"]},{"raw_affiliation_string":"Department of Computer Science, University of Turin, Torino, 10123, Italy","institution_ids":["https://openalex.org/I55143463"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5107527001"],"corresponding_institution_ids":["https://openalex.org/I4210095558","https://openalex.org/I55143463"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.03946725,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"41","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9884999990463257,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9884999990463257,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9592999815940857,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9369999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/granularity","display_name":"Granularity","score":0.7825524806976318},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7807391881942749},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6743006110191345},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.48075196146965027},{"id":"https://openalex.org/keywords/formalism","display_name":"Formalism (music)","score":0.45607948303222656},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.4514736533164978},{"id":"https://openalex.org/keywords/modelling-biological-systems","display_name":"Modelling biological systems","score":0.4287520945072174},{"id":"https://openalex.org/keywords/complex-system","display_name":"Complex system","score":0.41218191385269165},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.38751739263534546},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3599264323711395},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2704896330833435},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.20682942867279053},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.16550549864768982},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09223270416259766},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.09199154376983643}],"concepts":[{"id":"https://openalex.org/C177774035","wikidata":"https://www.wikidata.org/wiki/Q1246948","display_name":"Granularity","level":2,"score":0.7825524806976318},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7807391881942749},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6743006110191345},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.48075196146965027},{"id":"https://openalex.org/C73301696","wikidata":"https://www.wikidata.org/wiki/Q5469984","display_name":"Formalism (music)","level":3,"score":0.45607948303222656},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.4514736533164978},{"id":"https://openalex.org/C137866125","wikidata":"https://www.wikidata.org/wiki/Q4299308","display_name":"Modelling biological systems","level":3,"score":0.4287520945072174},{"id":"https://openalex.org/C47822265","wikidata":"https://www.wikidata.org/wiki/Q854457","display_name":"Complex system","level":2,"score":0.41218191385269165},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.38751739263534546},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3599264323711395},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2704896330833435},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.20682942867279053},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.16550549864768982},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09223270416259766},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.09199154376983643},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C558565934","wikidata":"https://www.wikidata.org/wiki/Q2743","display_name":"Musical","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016360","descriptor_name":"Clostridioides difficile","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016360","descriptor_name":"Clostridioides difficile","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaf103","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf103","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf103/62387315/btaf103.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40073274","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40073274","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:10744678","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11932724","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf103","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf103","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf103/62387315/btaf103.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4408346118.pdf"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W1563992251","https://openalex.org/W2044935306","https://openalex.org/W2045921664","https://openalex.org/W2048596643","https://openalex.org/W2062826001","https://openalex.org/W2088765131","https://openalex.org/W2124419982","https://openalex.org/W2126175129","https://openalex.org/W2169635449","https://openalex.org/W2501105363","https://openalex.org/W2559597060","https://openalex.org/W2587946751","https://openalex.org/W2587982688","https://openalex.org/W2762019694","https://openalex.org/W2783242163","https://openalex.org/W2795764425","https://openalex.org/W2888637453","https://openalex.org/W2911411449","https://openalex.org/W2920146178","https://openalex.org/W2949418748","https://openalex.org/W2950173838","https://openalex.org/W2952773158","https://openalex.org/W2968283874","https://openalex.org/W3035218863","https://openalex.org/W3087622999","https://openalex.org/W3111610496","https://openalex.org/W3164109950","https://openalex.org/W4282928588","https://openalex.org/W4307561111","https://openalex.org/W4313645415","https://openalex.org/W4388806012","https://openalex.org/W4392078389","https://openalex.org/W6770172025","https://openalex.org/W6944532054"],"related_works":["https://openalex.org/W2158714033","https://openalex.org/W4210989272","https://openalex.org/W1975586684","https://openalex.org/W4206945140","https://openalex.org/W2063941210","https://openalex.org/W4386628104","https://openalex.org/W2127864418","https://openalex.org/W2947028852","https://openalex.org/W2598362101","https://openalex.org/W2212032968"],"abstract_inverted_index":{"GreatMod":[0],"https://qbioturin.github.io/epimod/,":[1],"epimod_FBAfunctions":[2],"https://github.com/qBioTurin/epimod_FBAfunctions,":[3],"first":[4],"case":[5,11],"study":[6,12],"E.":[7],"coli":[8],"https://github.com/qBioTurin/Ec_coli_modelling,":[9],"second":[10],"C.":[13],"difficile":[14],"https://github.com/qBioTurin/EpiCell_CDifficile.":[15]},"counts_by_year":[],"updated_date":"2026-04-19T08:26:33.389920","created_date":"2025-03-12T00:00:00"}
