{"id":"https://openalex.org/W4407851917","doi":"https://doi.org/10.1093/bioinformatics/btaf079","title":"AskBeacon\u2014performing genomic data exchange and analytics with natural language","display_name":"AskBeacon\u2014performing genomic data exchange and analytics with natural language","publication_year":2025,"publication_date":"2025-02-22","ids":{"openalex":"https://openalex.org/W4407851917","doi":"https://doi.org/10.1093/bioinformatics/btaf079","pmid":"https://pubmed.ncbi.nlm.nih.gov/39985504"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf079","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf079","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf079/62052449/btaf079.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf079/62052449/btaf079.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039351950","display_name":"Anuradha Wickramarachchi","orcid":"https://orcid.org/0000-0003-4160-5965"},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"government","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I4210101388","display_name":"Health Sciences and Nutrition","ror":"https://ror.org/0152bt112","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4210101388","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I4210141844","display_name":"Australian e-Health Research Centre","ror":"https://ror.org/04ywhbc61","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801244131","https://openalex.org/I2801453606","https://openalex.org/I4210141844","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Anuradha Wickramarachchi","raw_affiliation_strings":["Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation , Adelaide, SA 5000,","Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation, Adelaide, Australia"],"affiliations":[{"raw_affiliation_string":"Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation , Adelaide, SA 5000,","institution_ids":["https://openalex.org/I4210141844","https://openalex.org/I4210101388"]},{"raw_affiliation_string":"Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation, Adelaide, Australia","institution_ids":["https://openalex.org/I4210141844","https://openalex.org/I1292875679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114617327","display_name":"Shakila Tonni","orcid":null},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"government","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I4210101388","display_name":"Health Sciences and Nutrition","ror":"https://ror.org/0152bt112","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4210101388","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Shakila Tonni","raw_affiliation_strings":["Data61, Commonwealth Scientific and Industrial Research Organisation , Sydney, NSW 2015,","Data61, Commonwealth Scientific and Industrial Research Organisation, Sydney, Australia"],"affiliations":[{"raw_affiliation_string":"Data61, Commonwealth Scientific and Industrial Research Organisation , Sydney, NSW 2015,","institution_ids":["https://openalex.org/I4210101388"]},{"raw_affiliation_string":"Data61, Commonwealth Scientific and Industrial Research Organisation, Sydney, Australia","institution_ids":["https://openalex.org/I1292875679","https://openalex.org/I42894916"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Sonali Majumdar","orcid":null},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"government","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I4210101388","display_name":"Health Sciences and Nutrition","ror":"https://ror.org/0152bt112","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4210101388","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Sonali Majumdar","raw_affiliation_strings":["Data61, Commonwealth Scientific and Industrial Research Organisation , Sydney, NSW 2015,","Data61, Commonwealth Scientific and Industrial Research Organisation, Sydney, Australia"],"affiliations":[{"raw_affiliation_string":"Data61, Commonwealth Scientific and Industrial Research Organisation , Sydney, NSW 2015,","institution_ids":["https://openalex.org/I4210101388"]},{"raw_affiliation_string":"Data61, Commonwealth Scientific and Industrial Research Organisation, Sydney, Australia","institution_ids":["https://openalex.org/I1292875679","https://openalex.org/I42894916"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041251183","display_name":"Sarvnaz Karimi","orcid":"https://orcid.org/0000-0002-4927-3937"},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"government","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I4210101388","display_name":"Health Sciences and Nutrition","ror":"https://ror.org/0152bt112","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4210101388","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Sarvnaz Karimi","raw_affiliation_strings":["Data61, Commonwealth Scientific and Industrial Research Organisation , Sydney, NSW 2015,","Data61, Commonwealth Scientific and Industrial Research Organisation, Sydney, Australia"],"affiliations":[{"raw_affiliation_string":"Data61, Commonwealth Scientific and Industrial Research Organisation , Sydney, NSW 2015,","institution_ids":["https://openalex.org/I4210101388"]},{"raw_affiliation_string":"Data61, Commonwealth Scientific and Industrial Research Organisation, Sydney, Australia","institution_ids":["https://openalex.org/I1292875679","https://openalex.org/I42894916"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037656140","display_name":"Sulev K\u00f5ks","orcid":null},"institutions":[{"id":"https://openalex.org/I176790772","display_name":"Murdoch University","ror":"https://ror.org/00r4sry34","country_code":"AU","type":"education","lineage":["https://openalex.org/I176790772"]},{"id":"https://openalex.org/I4210144648","display_name":"Perron Institute for Neurological and Translational Science","ror":"https://ror.org/04yn72m09","country_code":"AU","type":"facility","lineage":["https://openalex.org/I4210144648"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Sulev K\u00f5ks","raw_affiliation_strings":["Centre for Molecular Medicine and Innovative Therapeutics, Murdoch University , Perth, WA 6150,","Perron Institute for Neurological and Translational Science , Perth, WA 6009,","Perron Institute for Neurological and Translational Science, Perth, WA 6009, Australia","Centre for Molecular Medicine and Innovative Therapeutics, Murdoch University, Perth, WA 6150, Australia"],"affiliations":[{"raw_affiliation_string":"Centre for Molecular Medicine and Innovative Therapeutics, Murdoch University , Perth, WA 6150,","institution_ids":["https://openalex.org/I176790772"]},{"raw_affiliation_string":"Perron Institute for Neurological and Translational Science , Perth, WA 6009,","institution_ids":[]},{"raw_affiliation_string":"Perron Institute for Neurological and Translational Science, Perth, WA 6009, Australia","institution_ids":["https://openalex.org/I4210144648"]},{"raw_affiliation_string":"Centre for Molecular Medicine and Innovative Therapeutics, Murdoch University, Perth, WA 6150, Australia","institution_ids":["https://openalex.org/I176790772"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074922155","display_name":"Brendan Hosking","orcid":"https://orcid.org/0000-0003-4018-2489"},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"government","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I4210141844","display_name":"Australian e-Health Research Centre","ror":"https://ror.org/04ywhbc61","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801244131","https://openalex.org/I2801453606","https://openalex.org/I4210141844","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Brendan Hosking","raw_affiliation_strings":["Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation , Sydney, NSW 2145,","Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation , Sydney"],"affiliations":[{"raw_affiliation_string":"Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation , Sydney, NSW 2145,","institution_ids":["https://openalex.org/I4210141844"]},{"raw_affiliation_string":"Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation , Sydney","institution_ids":["https://openalex.org/I4210141844","https://openalex.org/I1292875679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040272750","display_name":"Jordi Rambla","orcid":"https://orcid.org/0000-0001-9091-257X"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jordi Rambla","raw_affiliation_strings":["Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology , Barcelona, Ciutat Vella 08003,","Department of Medicine and Life Sciences, Universitat Pompeu Fabra, PRBB , Barcelona 08003,","Department of Medicine and Life Sciences, Universitat Pompeu Fabra, PRBB, Barcelona, Spain","Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology , Barcelona, Ciutat Vella 08003,","institution_ids":["https://openalex.org/I4210137962"]},{"raw_affiliation_string":"Department of Medicine and Life Sciences, Universitat Pompeu Fabra, PRBB , Barcelona 08003,","institution_ids":["https://openalex.org/I170486558"]},{"raw_affiliation_string":"Department of Medicine and Life Sciences, Universitat Pompeu Fabra, PRBB, Barcelona, Spain","institution_ids":["https://openalex.org/I170486558"]},{"raw_affiliation_string":"Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain","institution_ids":["https://openalex.org/I4210137962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022616183","display_name":"Natalie A. Twine","orcid":"https://orcid.org/0000-0002-7351-864X"},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"government","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I4210141844","display_name":"Australian e-Health Research Centre","ror":"https://ror.org/04ywhbc61","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801244131","https://openalex.org/I2801453606","https://openalex.org/I4210141844","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I99043593","display_name":"Macquarie University","ror":"https://ror.org/01sf06y89","country_code":"AU","type":"education","lineage":["https://openalex.org/I99043593"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Natalie A Twine","raw_affiliation_strings":["Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation , Sydney, NSW 2145,","Faculty of Science and Engineering, Applied BioSciences, Macquarie University , Macquarie Park, NSW 2109,","Macquarie University, Applied BioSciences, Faculty of Science and Engineering, Macquarie Park, Australia","Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation , Sydney"],"affiliations":[{"raw_affiliation_string":"Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation , Sydney, NSW 2145,","institution_ids":["https://openalex.org/I4210141844"]},{"raw_affiliation_string":"Faculty of Science and Engineering, Applied BioSciences, Macquarie University , Macquarie Park, NSW 2109,","institution_ids":["https://openalex.org/I99043593"]},{"raw_affiliation_string":"Macquarie University, Applied BioSciences, Faculty of Science and Engineering, Macquarie Park, Australia","institution_ids":["https://openalex.org/I99043593"]},{"raw_affiliation_string":"Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation , Sydney","institution_ids":["https://openalex.org/I4210141844","https://openalex.org/I1292875679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088435862","display_name":"Yatish Jain","orcid":"https://orcid.org/0000-0002-0556-6586"},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"government","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I4210141844","display_name":"Australian e-Health Research Centre","ror":"https://ror.org/04ywhbc61","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801244131","https://openalex.org/I2801453606","https://openalex.org/I4210141844","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I99043593","display_name":"Macquarie University","ror":"https://ror.org/01sf06y89","country_code":"AU","type":"education","lineage":["https://openalex.org/I99043593"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Yatish Jain","raw_affiliation_strings":["Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation , Sydney, NSW 2145,","Faculty of Science and Engineering, Applied BioSciences, Macquarie University , Macquarie Park, NSW 2109,","Macquarie University, Applied BioSciences, Faculty of Science and Engineering, Macquarie Park, Australia","Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation , Sydney"],"affiliations":[{"raw_affiliation_string":"Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation , Sydney, NSW 2145,","institution_ids":["https://openalex.org/I4210141844"]},{"raw_affiliation_string":"Faculty of Science and Engineering, Applied BioSciences, Macquarie University , Macquarie Park, NSW 2109,","institution_ids":["https://openalex.org/I99043593"]},{"raw_affiliation_string":"Macquarie University, Applied BioSciences, Faculty of Science and Engineering, Macquarie Park, Australia","institution_ids":["https://openalex.org/I99043593"]},{"raw_affiliation_string":"Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation , Sydney","institution_ids":["https://openalex.org/I4210141844","https://openalex.org/I1292875679"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5107979977","display_name":"Denis C. Bauer","orcid":"https://orcid.org/0000-0001-8033-9810"},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"government","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]},{"id":"https://openalex.org/I4210101388","display_name":"Health Sciences and Nutrition","ror":"https://ror.org/0152bt112","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4210101388","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I4210141844","display_name":"Australian e-Health Research Centre","ror":"https://ror.org/04ywhbc61","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801244131","https://openalex.org/I2801453606","https://openalex.org/I4210141844","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I99043593","display_name":"Macquarie University","ror":"https://ror.org/01sf06y89","country_code":"AU","type":"education","lineage":["https://openalex.org/I99043593"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Denis C Bauer","raw_affiliation_strings":["Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation , Adelaide, SA 5000,","Department of Biomedical Informatics and Digital Health, School of Medical Sciences, University of Sydney , Sydney, NSW 2006,","Faculty of Science and Engineering, Applied BioSciences, Macquarie University , Macquarie Park, NSW 2109,","Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation, Adelaide, Australia","Macquarie University, Applied BioSciences, Faculty of Science and Engineering, Macquarie Park, Australia","University of Sydney, School\u2014School of Medical Sciences Department of Biomedical Informatics and Digital Health, , Sydney,"],"affiliations":[{"raw_affiliation_string":"Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation , Adelaide, SA 5000,","institution_ids":["https://openalex.org/I4210141844","https://openalex.org/I4210101388"]},{"raw_affiliation_string":"Department of Biomedical Informatics and Digital Health, School of Medical Sciences, University of Sydney , Sydney, NSW 2006,","institution_ids":["https://openalex.org/I129604602"]},{"raw_affiliation_string":"Faculty of Science and Engineering, Applied BioSciences, Macquarie University , Macquarie Park, NSW 2109,","institution_ids":["https://openalex.org/I99043593"]},{"raw_affiliation_string":"Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation, Adelaide, Australia","institution_ids":["https://openalex.org/I4210141844","https://openalex.org/I1292875679"]},{"raw_affiliation_string":"Macquarie University, Applied BioSciences, Faculty of Science and Engineering, Macquarie Park, Australia","institution_ids":["https://openalex.org/I99043593"]},{"raw_affiliation_string":"University of Sydney, School\u2014School of Medical Sciences Department of Biomedical Informatics and Digital Health, , Sydney,","institution_ids":["https://openalex.org/I129604602"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5039351950"],"corresponding_institution_ids":["https://openalex.org/I1292875679","https://openalex.org/I4210101388","https://openalex.org/I4210141844"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.04072151,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"41","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9768000245094299,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9768000245094299,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.921999990940094,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6680352687835693},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6464011669158936},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.6122996807098389},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.48913338780403137},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4878397285938263},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.4338034391403198},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.42460769414901733},{"id":"https://openalex.org/keywords/protocol","display_name":"Protocol (science)","score":0.41155216097831726},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4053625464439392},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.23547837138175964},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.23278331756591797},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1752508580684662},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14996013045310974},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.09859448671340942},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09856581687927246},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09606438875198364}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6680352687835693},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6464011669158936},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.6122996807098389},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.48913338780403137},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4878397285938263},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.4338034391403198},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.42460769414901733},{"id":"https://openalex.org/C2780385302","wikidata":"https://www.wikidata.org/wiki/Q367158","display_name":"Protocol (science)","level":3,"score":0.41155216097831726},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4053625464439392},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.23547837138175964},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.23278331756591797},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1752508580684662},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14996013045310974},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.09859448671340942},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09856581687927246},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09606438875198364},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010300","descriptor_name":"Parkinson Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010300","descriptor_name":"Parkinson Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010300","descriptor_name":"Parkinson Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010300","descriptor_name":"Parkinson Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010300","descriptor_name":"Parkinson Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btaf079","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf079","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf079/62052449/btaf079.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39985504","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39985504","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:repositori-api.upf.edu:10230/70381","is_oa":true,"landing_page_url":"http://hdl.handle.net/10230/70381","pdf_url":"https://repositori.upf.edu/bitstreams/58290111-9ec7-4c09-a4bb-b99dc616c703/download","source":{"id":"https://openalex.org/S4306402615","display_name":"Repositori digital de la UPF (Universitat Pompeu Fabra)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I170486558","host_organization_name":"Universitat Pompeu Fabra","host_organization_lineage":["https://openalex.org/I170486558"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:europepmc.org:10711984","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11889448","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf079","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf079","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf079/62052449/btaf079.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320386","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4407851917.pdf"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W2888291381","https://openalex.org/W2919288702","https://openalex.org/W3131274224","https://openalex.org/W3159176949","https://openalex.org/W4292210254","https://openalex.org/W4323310036","https://openalex.org/W4386741099","https://openalex.org/W4392361637","https://openalex.org/W4399562576"],"related_works":["https://openalex.org/W2013728941","https://openalex.org/W4225274103","https://openalex.org/W2154046714","https://openalex.org/W2189613078","https://openalex.org/W2579659702","https://openalex.org/W2923661510","https://openalex.org/W1574055964","https://openalex.org/W1965329638","https://openalex.org/W2542318691","https://openalex.org/W3160708108"],"abstract_inverted_index":{"AskBeacon":[0],"is":[1],"available":[2],"at":[3],"https://github.com/aehrc/AskBeacon.":[4]},"counts_by_year":[],"updated_date":"2026-04-19T08:26:33.389920","created_date":"2025-10-10T00:00:00"}