{"id":"https://openalex.org/W4407295887","doi":"https://doi.org/10.1093/bioinformatics/btaf066","title":"NMFProfiler: a multi-omics integration method for samples stratified in groups","display_name":"NMFProfiler: a multi-omics integration method for samples stratified in groups","publication_year":2025,"publication_date":"2025-02-01","ids":{"openalex":"https://openalex.org/W4407295887","doi":"https://doi.org/10.1093/bioinformatics/btaf066","pmid":"https://pubmed.ncbi.nlm.nih.gov/39921890"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf066","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf066","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bioinformatics/btaf066","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5093998129","display_name":"Aur\u00e9lie Mercadi\u00e9","orcid":null},"institutions":[{"id":"https://openalex.org/I17866349","display_name":"Universit\u00e9 F\u00e9d\u00e9rale de Toulouse Midi-Pyr\u00e9n\u00e9es","ror":"https://ror.org/004raaa70","country_code":"FR","type":"education","lineage":["https://openalex.org/I17866349"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210140000","display_name":"Laboratoire de Recherche en Sciences V\u00e9g\u00e9tales","ror":"https://ror.org/047z5as19","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I205747304","https://openalex.org/I205747304","https://openalex.org/I4210096427","https://openalex.org/I4210131653","https://openalex.org/I4210140000","https://openalex.org/I4405258862","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I4210143394","display_name":"Pierre Fabre (France)","ror":"https://ror.org/04hdhz511","country_code":"FR","type":"company","lineage":["https://openalex.org/I4210143394"]},{"id":"https://openalex.org/I4210154939","display_name":"G\u00e9n\u00e9tique Physiologie et Syst\u00e8mes d'Elevage","ror":"https://ror.org/04gg6ne93","country_code":"FR","type":"facility","lineage":["https://openalex.org/I176063091","https://openalex.org/I205747304","https://openalex.org/I4210088668","https://openalex.org/I4210117091","https://openalex.org/I4210131653","https://openalex.org/I4210154939","https://openalex.org/I4405258862","https://openalex.org/I4405258862"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Aur\u00e9lie Mercadi\u00e9","raw_affiliation_strings":["Recherche & D\u00e9veloppement, Pierre Fabre Dermo-cosm\u00e9tique , Toulouse 31300,","Universit\u00e9 de Toulouse, INRAE, UR MIAT , Castanet-Tolosan Cedex 31326,","Universit\u00e9 de Toulouse, INRAE , UR MIAT, 24 chemin de Borde Rouge, 31326, Castanet-Tolosan cedex,","Pierre Fabre Dermo-cosm\u00e9tique , H\u00f4tel-Dieu Saint-Jacques - 2 rue Charles Viguerie, 31300, Toulouse,"],"affiliations":[{"raw_affiliation_string":"Recherche & D\u00e9veloppement, Pierre Fabre Dermo-cosm\u00e9tique , Toulouse 31300,","institution_ids":["https://openalex.org/I4210143394"]},{"raw_affiliation_string":"Universit\u00e9 de Toulouse, INRAE, UR MIAT , Castanet-Tolosan Cedex 31326,","institution_ids":["https://openalex.org/I4210140000","https://openalex.org/I4210154939","https://openalex.org/I4210088668"]},{"raw_affiliation_string":"Universit\u00e9 de Toulouse, INRAE , UR MIAT, 24 chemin de Borde Rouge, 31326, Castanet-Tolosan cedex,","institution_ids":["https://openalex.org/I4210088668","https://openalex.org/I17866349"]},{"raw_affiliation_string":"Pierre Fabre Dermo-cosm\u00e9tique , H\u00f4tel-Dieu Saint-Jacques - 2 rue Charles Viguerie, 31300, Toulouse,","institution_ids":["https://openalex.org/I4210143394"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091910004","display_name":"E. Gravier","orcid":"https://orcid.org/0000-0002-8911-5546"},"institutions":[{"id":"https://openalex.org/I4210143394","display_name":"Pierre Fabre (France)","ror":"https://ror.org/04hdhz511","country_code":"FR","type":"company","lineage":["https://openalex.org/I4210143394"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"\u00c9l\u00e9onore Gravier","raw_affiliation_strings":["Recherche & D\u00e9veloppement, Pierre Fabre Dermo-cosm\u00e9tique , Toulouse 31300,","Pierre Fabre Dermo-cosm\u00e9tique , H\u00f4tel-Dieu Saint-Jacques - 2 rue Charles Viguerie, 31300, Toulouse,"],"affiliations":[{"raw_affiliation_string":"Recherche & D\u00e9veloppement, Pierre Fabre Dermo-cosm\u00e9tique , Toulouse 31300,","institution_ids":["https://openalex.org/I4210143394"]},{"raw_affiliation_string":"Pierre Fabre Dermo-cosm\u00e9tique , H\u00f4tel-Dieu Saint-Jacques - 2 rue Charles Viguerie, 31300, Toulouse,","institution_ids":["https://openalex.org/I4210143394"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038026656","display_name":"Gwendal Josse","orcid":"https://orcid.org/0000-0003-3375-5226"},"institutions":[{"id":"https://openalex.org/I4210143394","display_name":"Pierre Fabre (France)","ror":"https://ror.org/04hdhz511","country_code":"FR","type":"company","lineage":["https://openalex.org/I4210143394"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Gwendal Josse","raw_affiliation_strings":["Recherche & D\u00e9veloppement, Pierre Fabre Dermo-cosm\u00e9tique , Toulouse 31300,","Pierre Fabre Dermo-cosm\u00e9tique , H\u00f4tel-Dieu Saint-Jacques - 2 rue Charles Viguerie, 31300, Toulouse,"],"affiliations":[{"raw_affiliation_string":"Recherche & D\u00e9veloppement, Pierre Fabre Dermo-cosm\u00e9tique , Toulouse 31300,","institution_ids":["https://openalex.org/I4210143394"]},{"raw_affiliation_string":"Pierre Fabre Dermo-cosm\u00e9tique , H\u00f4tel-Dieu Saint-Jacques - 2 rue Charles Viguerie, 31300, Toulouse,","institution_ids":["https://openalex.org/I4210143394"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029288839","display_name":"Isabelle Fournier","orcid":"https://orcid.org/0000-0003-1096-5044"},"institutions":[{"id":"https://openalex.org/I2279609970","display_name":"Universit\u00e9 de Lille","ror":"https://ror.org/02kzqn938","country_code":"FR","type":"education","lineage":["https://openalex.org/I2279609970"]},{"id":"https://openalex.org/I4210164350","display_name":"Prot\u00e9omique, R\u00e9ponse Inflammatoire et Spectrom\u00e9trie de Masse","ror":"https://ror.org/05dm3m993","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I2279609970","https://openalex.org/I3018718406","https://openalex.org/I4210093160","https://openalex.org/I4210141925","https://openalex.org/I4210164350"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Isabelle Fournier","raw_affiliation_strings":["Universit\u00e9 de Lille, Inserm, CHU Lille, U1192 PRISM , Lille 59000,","Universit\u00e9 de Lille, Inserm, CHU Lille , U1192 - Prot\u00e9omique R\u00e9ponse Inflammatoire Spectrom\u00e9trie de Masse\u2014PRISM, 59000, Lille,"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 de Lille, Inserm, CHU Lille, U1192 PRISM , Lille 59000,","institution_ids":["https://openalex.org/I2279609970"]},{"raw_affiliation_string":"Universit\u00e9 de Lille, Inserm, CHU Lille , U1192 - Prot\u00e9omique R\u00e9ponse Inflammatoire Spectrom\u00e9trie de Masse\u2014PRISM, 59000, Lille,","institution_ids":["https://openalex.org/I4210164350","https://openalex.org/I2279609970"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060093666","display_name":"C\u00e9cile Viod\u00e9","orcid":null},"institutions":[{"id":"https://openalex.org/I4210143394","display_name":"Pierre Fabre (France)","ror":"https://ror.org/04hdhz511","country_code":"FR","type":"company","lineage":["https://openalex.org/I4210143394"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"C\u00e9cile Viod\u00e9","raw_affiliation_strings":["Recherche & D\u00e9veloppement, Pierre Fabre Dermo-cosm\u00e9tique , Toulouse 31300,","Pierre Fabre Dermo-cosm\u00e9tique , H\u00f4tel-Dieu Saint-Jacques - 2 rue Charles Viguerie, 31300, Toulouse,"],"affiliations":[{"raw_affiliation_string":"Recherche & D\u00e9veloppement, Pierre Fabre Dermo-cosm\u00e9tique , Toulouse 31300,","institution_ids":["https://openalex.org/I4210143394"]},{"raw_affiliation_string":"Pierre Fabre Dermo-cosm\u00e9tique , H\u00f4tel-Dieu Saint-Jacques - 2 rue Charles Viguerie, 31300, Toulouse,","institution_ids":["https://openalex.org/I4210143394"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009531781","display_name":"Nathalie Vialaneix","orcid":"https://orcid.org/0000-0003-1156-0639"},"institutions":[{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210140000","display_name":"Laboratoire de Recherche en Sciences V\u00e9g\u00e9tales","ror":"https://ror.org/047z5as19","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I205747304","https://openalex.org/I205747304","https://openalex.org/I4210096427","https://openalex.org/I4210131653","https://openalex.org/I4210140000","https://openalex.org/I4405258862","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I4210154939","display_name":"G\u00e9n\u00e9tique Physiologie et Syst\u00e8mes d'Elevage","ror":"https://ror.org/04gg6ne93","country_code":"FR","type":"facility","lineage":["https://openalex.org/I176063091","https://openalex.org/I205747304","https://openalex.org/I4210088668","https://openalex.org/I4210117091","https://openalex.org/I4210131653","https://openalex.org/I4210154939","https://openalex.org/I4405258862","https://openalex.org/I4405258862"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Nathalie Vialaneix","raw_affiliation_strings":["Universit\u00e9 de Toulouse, INRAE, UR MIAT , Castanet-Tolosan Cedex 31326,"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 de Toulouse, INRAE, UR MIAT , Castanet-Tolosan Cedex 31326,","institution_ids":["https://openalex.org/I4210140000","https://openalex.org/I4210154939","https://openalex.org/I4210088668"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008589136","display_name":"C\u00e9line Brouard","orcid":"https://orcid.org/0000-0002-5574-7027"},"institutions":[{"id":"https://openalex.org/I17866349","display_name":"Universit\u00e9 F\u00e9d\u00e9rale de Toulouse Midi-Pyr\u00e9n\u00e9es","ror":"https://ror.org/004raaa70","country_code":"FR","type":"education","lineage":["https://openalex.org/I17866349"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210140000","display_name":"Laboratoire de Recherche en Sciences V\u00e9g\u00e9tales","ror":"https://ror.org/047z5as19","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I205747304","https://openalex.org/I205747304","https://openalex.org/I4210096427","https://openalex.org/I4210131653","https://openalex.org/I4210140000","https://openalex.org/I4405258862","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I4210154939","display_name":"G\u00e9n\u00e9tique Physiologie et Syst\u00e8mes d'Elevage","ror":"https://ror.org/04gg6ne93","country_code":"FR","type":"facility","lineage":["https://openalex.org/I176063091","https://openalex.org/I205747304","https://openalex.org/I4210088668","https://openalex.org/I4210117091","https://openalex.org/I4210131653","https://openalex.org/I4210154939","https://openalex.org/I4405258862","https://openalex.org/I4405258862"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"C\u00e9line Brouard","raw_affiliation_strings":["Universit\u00e9 de Toulouse, INRAE, UR MIAT , Castanet-Tolosan Cedex 31326,","Universit\u00e9 de Toulouse, INRAE , UR MIAT, 24 chemin de Borde Rouge, 31326, Castanet-Tolosan cedex,"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 de Toulouse, INRAE, UR MIAT , Castanet-Tolosan Cedex 31326,","institution_ids":["https://openalex.org/I4210140000","https://openalex.org/I4210154939","https://openalex.org/I4210088668"]},{"raw_affiliation_string":"Universit\u00e9 de Toulouse, INRAE , UR MIAT, 24 chemin de Borde Rouge, 31326, Castanet-Tolosan cedex,","institution_ids":["https://openalex.org/I4210088668","https://openalex.org/I17866349"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5093998129"],"corresponding_institution_ids":["https://openalex.org/I17866349","https://openalex.org/I4210088668","https://openalex.org/I4210140000","https://openalex.org/I4210143394","https://openalex.org/I4210154939"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":2.1924,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.85636805,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"41","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9908000230789185,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/omics","display_name":"Omics","score":0.6674472689628601},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.46988677978515625},{"id":"https://openalex.org/keywords/stratified-sampling","display_name":"Stratified sampling","score":0.4582461714744568},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.41679248213768005},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3344837427139282},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2753772735595703},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.263053297996521},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2221846878528595},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.17035698890686035}],"concepts":[{"id":"https://openalex.org/C157585117","wikidata":"https://www.wikidata.org/wiki/Q158666","display_name":"Omics","level":2,"score":0.6674472689628601},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.46988677978515625},{"id":"https://openalex.org/C49898467","wikidata":"https://www.wikidata.org/wiki/Q1517706","display_name":"Stratified sampling","level":2,"score":0.4582461714744568},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.41679248213768005},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3344837427139282},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2753772735595703},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.263053297996521},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2221846878528595},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.17035698890686035}],"mesh":[{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003876","descriptor_name":"Dermatitis, Atopic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003876","descriptor_name":"Dermatitis, Atopic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003876","descriptor_name":"Dermatitis, Atopic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003876","descriptor_name":"Dermatitis, Atopic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003876","descriptor_name":"Dermatitis, Atopic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003876","descriptor_name":"Dermatitis, Atopic","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003876","descriptor_name":"Dermatitis, Atopic","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003876","descriptor_name":"Dermatitis, Atopic","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003876","descriptor_name":"Dermatitis, Atopic","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003876","descriptor_name":"Dermatitis, Atopic","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btaf066","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf066","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39921890","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39921890","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11855281","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11855281","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11855281/pdf/btaf066.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:HAL:hal-04992913v1","is_oa":true,"landing_page_url":"https://hal.science/hal-04992913","pdf_url":null,"source":{"id":"https://openalex.org/S4406922466","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2025, 41 (2), pp.btaf066. &#x27E8;10.1093/bioinformatics/btaf066&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:lilloa.univ-lille.fr:20.500.12210/130222","is_oa":false,"landing_page_url":"http://hdl.handle.net/20.500.12210/130222","pdf_url":null,"source":{"id":"https://openalex.org/S4306402203","display_name":"LillOA (Universit\u00e9 de Lille (University Of Lille))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210123514","host_organization_name":"Centre d'Etudes en Civilisations, Langues et Litt\u00e9ratures Etrang\u00e8res","host_organization_lineage":["https://openalex.org/I4210123514"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf066","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf066","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":40,"referenced_works":["https://openalex.org/W1902027874","https://openalex.org/W2008929650","https://openalex.org/W2018733922","https://openalex.org/W2027357158","https://openalex.org/W2033642329","https://openalex.org/W2064690543","https://openalex.org/W2104819583","https://openalex.org/W2109761160","https://openalex.org/W2116662982","https://openalex.org/W2117968640","https://openalex.org/W2134469465","https://openalex.org/W2163702333","https://openalex.org/W2169512366","https://openalex.org/W2180374961","https://openalex.org/W2206293491","https://openalex.org/W2307267906","https://openalex.org/W2562162676","https://openalex.org/W2611654275","https://openalex.org/W2753536369","https://openalex.org/W2808845633","https://openalex.org/W2884724578","https://openalex.org/W2887432996","https://openalex.org/W2900334494","https://openalex.org/W2909472027","https://openalex.org/W2913710075","https://openalex.org/W2963267245","https://openalex.org/W2994283242","https://openalex.org/W3025133004","https://openalex.org/W3120515035","https://openalex.org/W3137348321","https://openalex.org/W3183221166","https://openalex.org/W3188565114","https://openalex.org/W3190590697","https://openalex.org/W3216205642","https://openalex.org/W4224300102","https://openalex.org/W4292053589","https://openalex.org/W4295308760","https://openalex.org/W4390744869","https://openalex.org/W4390881769","https://openalex.org/W4399356177"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2142706325","https://openalex.org/W2390279801","https://openalex.org/W2373268560","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109"],"abstract_inverted_index":{"NMFProfiler":[0,7],"is":[1],"released":[2],"as":[3],"a":[4],"Python":[5],"package,":[6],"(v0.3.0),":[8],"available":[9],"on":[10],"PyPI.":[11]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2}],"updated_date":"2026-04-19T08:26:33.389920","created_date":"2025-10-10T00:00:00"}
