{"id":"https://openalex.org/W4405264854","doi":"https://doi.org/10.1093/bioinformatics/btae714","title":"OpenVariant: a toolkit to parse and operate multiple input file formats","display_name":"OpenVariant: a toolkit to parse and operate multiple input file formats","publication_year":2024,"publication_date":"2024-11-28","ids":{"openalex":"https://openalex.org/W4405264854","doi":"https://doi.org/10.1093/bioinformatics/btae714","pmid":"https://pubmed.ncbi.nlm.nih.gov/39663244"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae714","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae714","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/40/12/btae714/61068763/btae714.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/40/12/btae714/61068763/btae714.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5115091703","display_name":"David Mart\u00ednez-Mill\u00e1n","orcid":"https://orcid.org/0000-0002-4903-029X"},"institutions":[{"id":"https://openalex.org/I4210122345","display_name":"Institute for Research in Biomedicine","ror":"https://ror.org/01z1gye03","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210122345","https://openalex.org/I4210132884","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I4399598377","display_name":"Institute of Science and Technology","ror":"https://ror.org/02wxm3f24","country_code":null,"type":"education","lineage":["https://openalex.org/I155028946","https://openalex.org/I4399598377"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"David Mart\u00ednez-Mill\u00e1n","raw_affiliation_strings":["Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology , Barcelona, 08028,"],"affiliations":[{"raw_affiliation_string":"Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology , Barcelona, 08028,","institution_ids":["https://openalex.org/I4210122345","https://openalex.org/I4399598377"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062497627","display_name":"Federica Brando","orcid":"https://orcid.org/0000-0003-0537-0281"},"institutions":[{"id":"https://openalex.org/I4210122345","display_name":"Institute for Research in Biomedicine","ror":"https://ror.org/01z1gye03","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210122345","https://openalex.org/I4210132884","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I4399598377","display_name":"Institute of Science and Technology","ror":"https://ror.org/02wxm3f24","country_code":null,"type":"education","lineage":["https://openalex.org/I155028946","https://openalex.org/I4399598377"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Federica Brando","raw_affiliation_strings":["Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology , Barcelona, 08028,"],"affiliations":[{"raw_affiliation_string":"Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology , Barcelona, 08028,","institution_ids":["https://openalex.org/I4210122345","https://openalex.org/I4399598377"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016655416","display_name":"Miguel L. Grau","orcid":"https://orcid.org/0000-0002-5137-9976"},"institutions":[{"id":"https://openalex.org/I4210122345","display_name":"Institute for Research in Biomedicine","ror":"https://ror.org/01z1gye03","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210122345","https://openalex.org/I4210132884","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I4399598377","display_name":"Institute of Science and Technology","ror":"https://ror.org/02wxm3f24","country_code":null,"type":"education","lineage":["https://openalex.org/I155028946","https://openalex.org/I4399598377"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Miguel L. Grau","raw_affiliation_strings":["Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology , Barcelona, 08028,"],"affiliations":[{"raw_affiliation_string":"Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology , Barcelona, 08028,","institution_ids":["https://openalex.org/I4210122345","https://openalex.org/I4399598377"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036671789","display_name":"M\u00f2nica S\u00e1nchez-Guix\u00e9","orcid":"https://orcid.org/0000-0002-9430-4413"},"institutions":[{"id":"https://openalex.org/I2801357902","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886","country_code":"ES","type":"funder","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210122345","display_name":"Institute for Research in Biomedicine","ror":"https://ror.org/01z1gye03","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210122345","https://openalex.org/I4210132884","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I4210158561","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de C\u00e1ncer","ror":"https://ror.org/04hya7017","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210158561"]},{"id":"https://openalex.org/I4399598377","display_name":"Institute of Science and Technology","ror":"https://ror.org/02wxm3f24","country_code":null,"type":"education","lineage":["https://openalex.org/I155028946","https://openalex.org/I4399598377"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"M\u00f2nica S\u00e1nchez-Guix\u00e9","raw_affiliation_strings":["Centro de Investigaci\u00f3n Biom\u00e9dica en Red en C\u00e1ncer (CIBERONC), Instituto de Salud Carlos III , Madrid, 28029,","Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology , Barcelona, 08028,"],"affiliations":[{"raw_affiliation_string":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red en C\u00e1ncer (CIBERONC), Instituto de Salud Carlos III , Madrid, 28029,","institution_ids":["https://openalex.org/I4210158561","https://openalex.org/I2801357902"]},{"raw_affiliation_string":"Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology , Barcelona, 08028,","institution_ids":["https://openalex.org/I4210122345","https://openalex.org/I4399598377"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107287156","display_name":"C. L\u00f3pez-Elorduy","orcid":"https://orcid.org/0000-0001-8971-9051"},"institutions":[{"id":"https://openalex.org/I4210122345","display_name":"Institute for Research in Biomedicine","ror":"https://ror.org/01z1gye03","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210122345","https://openalex.org/I4210132884","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I4399598377","display_name":"Institute of Science and Technology","ror":"https://ror.org/02wxm3f24","country_code":null,"type":"education","lineage":["https://openalex.org/I155028946","https://openalex.org/I4399598377"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Carlos L\u00f3pez-Elorduy","raw_affiliation_strings":["Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology , Barcelona, 08028,"],"affiliations":[{"raw_affiliation_string":"Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology , Barcelona, 08028,","institution_ids":["https://openalex.org/I4210122345","https://openalex.org/I4399598377"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009918192","display_name":"Iker Reyes-Salazar","orcid":"https://orcid.org/0000-0002-4118-0285"},"institutions":[{"id":"https://openalex.org/I4210122345","display_name":"Institute for Research in Biomedicine","ror":"https://ror.org/01z1gye03","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210122345","https://openalex.org/I4210132884","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I4399598377","display_name":"Institute of Science and Technology","ror":"https://ror.org/02wxm3f24","country_code":null,"type":"education","lineage":["https://openalex.org/I155028946","https://openalex.org/I4399598377"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Iker Reyes-Salazar","raw_affiliation_strings":["Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology , Barcelona, 08028,"],"affiliations":[{"raw_affiliation_string":"Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology , Barcelona, 08028,","institution_ids":["https://openalex.org/I4210122345","https://openalex.org/I4399598377"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065546470","display_name":"Jordi Deu-Pons","orcid":"https://orcid.org/0000-0002-1150-1586"},"institutions":[{"id":"https://openalex.org/I2801357902","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886","country_code":"ES","type":"funder","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210122345","display_name":"Institute for Research in Biomedicine","ror":"https://ror.org/01z1gye03","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210122345","https://openalex.org/I4210132884","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I4210158561","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de C\u00e1ncer","ror":"https://ror.org/04hya7017","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210158561"]},{"id":"https://openalex.org/I4399598377","display_name":"Institute of Science and Technology","ror":"https://ror.org/02wxm3f24","country_code":null,"type":"education","lineage":["https://openalex.org/I155028946","https://openalex.org/I4399598377"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jordi Deu-Pons","raw_affiliation_strings":["Centro de Investigaci\u00f3n Biom\u00e9dica en Red en C\u00e1ncer (CIBERONC), Instituto de Salud Carlos III , Madrid, 28029,","Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology , Barcelona, 08028,"],"affiliations":[{"raw_affiliation_string":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red en C\u00e1ncer (CIBERONC), Instituto de Salud Carlos III , Madrid, 28029,","institution_ids":["https://openalex.org/I4210158561","https://openalex.org/I2801357902"]},{"raw_affiliation_string":"Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology , Barcelona, 08028,","institution_ids":["https://openalex.org/I4210122345","https://openalex.org/I4399598377"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057300983","display_name":"N\u00faria L\u00f3pez-Bigas","orcid":"https://orcid.org/0000-0003-4925-8988"},"institutions":[{"id":"https://openalex.org/I11932220","display_name":"Instituci\u00f3 Catalana de Recerca i Estudis Avan\u00e7ats","ror":"https://ror.org/0371hy230","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I11932220"]},{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I2801357902","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886","country_code":"ES","type":"funder","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210122345","display_name":"Institute for Research in Biomedicine","ror":"https://ror.org/01z1gye03","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210122345","https://openalex.org/I4210132884","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I4210158561","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de C\u00e1ncer","ror":"https://ror.org/04hya7017","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210158561"]},{"id":"https://openalex.org/I4399598377","display_name":"Institute of Science and Technology","ror":"https://ror.org/02wxm3f24","country_code":null,"type":"education","lineage":["https://openalex.org/I155028946","https://openalex.org/I4399598377"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"N\u00faria L\u00f3pez-Bigas","raw_affiliation_strings":["Centro de Investigaci\u00f3n Biom\u00e9dica en Red en C\u00e1ncer (CIBERONC), Instituto de Salud Carlos III , Madrid, 28029,","Department of Medicine and Life Sciences, Universitat Pompeu Fabra , Barcelona, 08003,","Instituci\u00f3 Catalana de Recerca i Estudis Avan\u00e7ats (ICREA) , Barcelona, 08010,","Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology , Barcelona, 08028,"],"affiliations":[{"raw_affiliation_string":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red en C\u00e1ncer (CIBERONC), Instituto de Salud Carlos III , Madrid, 28029,","institution_ids":["https://openalex.org/I4210158561","https://openalex.org/I2801357902"]},{"raw_affiliation_string":"Department of Medicine and Life Sciences, Universitat Pompeu Fabra , Barcelona, 08003,","institution_ids":["https://openalex.org/I170486558"]},{"raw_affiliation_string":"Instituci\u00f3 Catalana de Recerca i Estudis Avan\u00e7ats (ICREA) , Barcelona, 08010,","institution_ids":["https://openalex.org/I11932220"]},{"raw_affiliation_string":"Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology , Barcelona, 08028,","institution_ids":["https://openalex.org/I4210122345","https://openalex.org/I4399598377"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5074784061","display_name":"Abel Gonz\u00e1lez-P\u00e9rez","orcid":"https://orcid.org/0000-0002-8582-4660"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I2801357902","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886","country_code":"ES","type":"funder","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210122345","display_name":"Institute for Research in Biomedicine","ror":"https://ror.org/01z1gye03","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210122345","https://openalex.org/I4210132884","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I4210158561","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de C\u00e1ncer","ror":"https://ror.org/04hya7017","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210158561"]},{"id":"https://openalex.org/I4399598377","display_name":"Institute of Science and Technology","ror":"https://ror.org/02wxm3f24","country_code":null,"type":"education","lineage":["https://openalex.org/I155028946","https://openalex.org/I4399598377"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Abel Gonz\u00e1lez-P\u00e9rez","raw_affiliation_strings":["Centro de Investigaci\u00f3n Biom\u00e9dica en Red en C\u00e1ncer (CIBERONC), Instituto de Salud Carlos III , Madrid, 28029,","Department of Medicine and Life Sciences, Universitat Pompeu Fabra , Barcelona, 08003,","Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology , Barcelona, 08028,"],"affiliations":[{"raw_affiliation_string":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red en C\u00e1ncer (CIBERONC), Instituto de Salud Carlos III , Madrid, 28029,","institution_ids":["https://openalex.org/I4210158561","https://openalex.org/I2801357902"]},{"raw_affiliation_string":"Department of Medicine and Life Sciences, Universitat Pompeu Fabra , Barcelona, 08003,","institution_ids":["https://openalex.org/I170486558"]},{"raw_affiliation_string":"Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology , Barcelona, 08028,","institution_ids":["https://openalex.org/I4210122345","https://openalex.org/I4399598377"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5115091703"],"corresponding_institution_ids":["https://openalex.org/I4210122345","https://openalex.org/I4399598377"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.25671826,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"40","issue":"12","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9865999817848206,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9739000201225281,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8298097848892212},{"id":"https://openalex.org/keywords/parsing","display_name":"Parsing","score":0.8224296569824219},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.6194935441017151},{"id":"https://openalex.org/keywords/file-format","display_name":"File format","score":0.4440644383430481},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4311886131763458},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.39460620284080505},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.32559049129486084}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8298097848892212},{"id":"https://openalex.org/C186644900","wikidata":"https://www.wikidata.org/wiki/Q194152","display_name":"Parsing","level":2,"score":0.8224296569824219},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.6194935441017151},{"id":"https://openalex.org/C97250363","wikidata":"https://www.wikidata.org/wiki/Q235557","display_name":"File format","level":2,"score":0.4440644383430481},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4311886131763458},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.39460620284080505},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.32559049129486084}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btae714","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae714","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/40/12/btae714/61068763/btae714.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39663244","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39663244","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:repositori-api.upf.edu:10230/69474","is_oa":true,"landing_page_url":"http://hdl.handle.net/10230/69474","pdf_url":null,"source":{"id":"https://openalex.org/S4306402615","display_name":"Repositori digital de la UPF (Universitat Pompeu Fabra)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I170486558","host_organization_name":"Universitat Pompeu Fabra","host_organization_lineage":["https://openalex.org/I170486558"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:11634536","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11634536","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11634536/pdf/btae714.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:diposit.ub.edu:2445/218620","is_oa":true,"landing_page_url":"https://hdl.handle.net/2445/218620","pdf_url":null,"source":{"id":"https://openalex.org/S4306401653","display_name":"Dip\u00f2sit Digital de la Universitat de Barcelona (Universitat de Barcelona)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71999127","host_organization_name":"Universitat de Barcelona","host_organization_lineage":["https://openalex.org/I71999127"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Articles publicats en revistes (Institut de Recerca Biom\u00e8dica (IRB Barcelona))","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae714","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae714","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/40/12/btae714/61068763/btae714.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.7300000190734863,"id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G8312456713","display_name":null,"funder_award_id":"682398","funder_id":"https://openalex.org/F4320338335","funder_display_name":"H2020 European Research Council"}],"funders":[{"id":"https://openalex.org/F4320338335","display_name":"H2020 European Research Council","ror":"https://ror.org/0472cxd90"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4405264854.pdf","grobid_xml":"https://content.openalex.org/works/W4405264854.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W1984068087","https://openalex.org/W2075607782","https://openalex.org/W2108234281","https://openalex.org/W2121906867","https://openalex.org/W2149992227","https://openalex.org/W2158485828","https://openalex.org/W2242464395","https://openalex.org/W2417483443","https://openalex.org/W2796408191","https://openalex.org/W2895855977","https://openalex.org/W2896872272","https://openalex.org/W2949492942","https://openalex.org/W3006500278","https://openalex.org/W3013150773","https://openalex.org/W3047825284","https://openalex.org/W3184087999","https://openalex.org/W3212791962","https://openalex.org/W6755531017"],"related_works":["https://openalex.org/W579810227","https://openalex.org/W2142145894","https://openalex.org/W2952780262","https://openalex.org/W2979495269","https://openalex.org/W2392917763","https://openalex.org/W2358855848","https://openalex.org/W2359307945","https://openalex.org/W4388176285","https://openalex.org/W2083429127","https://openalex.org/W2033808215"],"abstract_inverted_index":{"OpenVariant":[0],"is":[1],"an":[2],"open-source":[3],"package":[4],"available":[5],"at":[6,12],"https://github.com/bbglab/openvariant.":[7],"Documentation":[8],"may":[9],"be":[10],"found":[11],"https://openvariant.readthedocs.io.":[13]},"counts_by_year":[],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
