{"id":"https://openalex.org/W4404690629","doi":"https://doi.org/10.1093/bioinformatics/btae708","title":"TPepPro: a deep learning model for predicting peptide\u2013protein interactions","display_name":"TPepPro: a deep learning model for predicting peptide\u2013protein interactions","publication_year":2024,"publication_date":"2024-11-25","ids":{"openalex":"https://openalex.org/W4404690629","doi":"https://doi.org/10.1093/bioinformatics/btae708","pmid":"https://pubmed.ncbi.nlm.nih.gov/39585721"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae708","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae708","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae708/60811203/btae708.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae708/60811203/btae708.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110832452","display_name":"Jin Xiao-hong","orcid":null},"institutions":[{"id":"https://openalex.org/I167274908","display_name":"Guangxi University for Nationalities","ror":"https://ror.org/0495efn48","country_code":"CN","type":"education","lineage":["https://openalex.org/I167274908"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiaohong Jin","raw_affiliation_strings":["School of Electronic Information, Guangxi University for Nationalities , Nanning 530000,","School of Electronic Information, Guangxi University for Nationalities, Nanning, China"],"affiliations":[{"raw_affiliation_string":"School of Electronic Information, Guangxi University for Nationalities , Nanning 530000,","institution_ids":["https://openalex.org/I167274908"]},{"raw_affiliation_string":"School of Electronic Information, Guangxi University for Nationalities, Nanning, China","institution_ids":["https://openalex.org/I167274908"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024559575","display_name":"Zimeng Chen","orcid":"https://orcid.org/0000-0002-8952-0664"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]},{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["CN","HK"],"is_corresponding":false,"raw_author_name":"Zimeng Chen","raw_affiliation_strings":["Division of Applied Oral Sciences and Community Dental Care, Faculty of Dentistry, The University of Hong Kong , Hong Kong SAR,","School of Pharmaceutical Sciences (Shenzhen), Shenzhen Campus of Sun Yat-sen University , Shenzhen, Guangdong 518107,","Division of Applied Oral Sciences & Community Dental Care, Faculty of Dentistry, The University of Hong Kong, Hong Kong SAR, China"],"affiliations":[{"raw_affiliation_string":"Division of Applied Oral Sciences and Community Dental Care, Faculty of Dentistry, The University of Hong Kong , Hong Kong SAR,","institution_ids":["https://openalex.org/I889458895"]},{"raw_affiliation_string":"School of Pharmaceutical Sciences (Shenzhen), Shenzhen Campus of Sun Yat-sen University , Shenzhen, Guangdong 518107,","institution_ids":["https://openalex.org/I180726961"]},{"raw_affiliation_string":"Division of Applied Oral Sciences & Community Dental Care, Faculty of Dentistry, The University of Hong Kong, Hong Kong SAR, China","institution_ids":["https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101123353","display_name":"Dan Yu","orcid":null},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Dan Yu","raw_affiliation_strings":["Division of Applied Oral Sciences and Community Dental Care, Faculty of Dentistry, The University of Hong Kong , Hong Kong SAR,","Division of Applied Oral Sciences & Community Dental Care, Faculty of Dentistry, The University of Hong Kong, Hong Kong SAR, China"],"affiliations":[{"raw_affiliation_string":"Division of Applied Oral Sciences and Community Dental Care, Faculty of Dentistry, The University of Hong Kong , Hong Kong SAR,","institution_ids":["https://openalex.org/I889458895"]},{"raw_affiliation_string":"Division of Applied Oral Sciences & Community Dental Care, Faculty of Dentistry, The University of Hong Kong, Hong Kong SAR, China","institution_ids":["https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000581688","display_name":"Qiuping Jiang","orcid":"https://orcid.org/0000-0002-6025-9343"},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Qianhui Jiang","raw_affiliation_strings":["Division of Applied Oral Sciences and Community Dental Care, Faculty of Dentistry, The University of Hong Kong , Hong Kong SAR,","Division of Applied Oral Sciences & Community Dental Care, Faculty of Dentistry, The University of Hong Kong, Hong Kong SAR, China"],"affiliations":[{"raw_affiliation_string":"Division of Applied Oral Sciences and Community Dental Care, Faculty of Dentistry, The University of Hong Kong , Hong Kong SAR,","institution_ids":["https://openalex.org/I889458895"]},{"raw_affiliation_string":"Division of Applied Oral Sciences & Community Dental Care, Faculty of Dentistry, The University of Hong Kong, Hong Kong SAR, China","institution_ids":["https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114177321","display_name":"Zhixiang Chen","orcid":"https://orcid.org/0009-0007-9988-0042"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]},{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]},{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["CN","HK"],"is_corresponding":false,"raw_author_name":"Zhuobin Chen","raw_affiliation_strings":["Division of Applied Oral Sciences and Community Dental Care, Faculty of Dentistry, The University of Hong Kong , Hong Kong SAR,","School of Pharmaceutical Sciences (Shenzhen), Shenzhen Campus of Sun Yat-sen University , Shenzhen, Guangdong 518107,","School of Pharmaceutical Sciences (Shenzhen), Shenzhen Campus of Sun Yat-sen University, Shenzhen, Guangdong 518107, China"],"affiliations":[{"raw_affiliation_string":"Division of Applied Oral Sciences and Community Dental Care, Faculty of Dentistry, The University of Hong Kong , Hong Kong SAR,","institution_ids":["https://openalex.org/I889458895"]},{"raw_affiliation_string":"School of Pharmaceutical Sciences (Shenzhen), Shenzhen Campus of Sun Yat-sen University , Shenzhen, Guangdong 518107,","institution_ids":["https://openalex.org/I180726961"]},{"raw_affiliation_string":"School of Pharmaceutical Sciences (Shenzhen), Shenzhen Campus of Sun Yat-sen University, Shenzhen, Guangdong 518107, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108191669","display_name":"Bin Yan","orcid":"https://orcid.org/0000-0001-6989-6093"},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Bin Yan","raw_affiliation_strings":["Division of Applied Oral Sciences and Community Dental Care, Faculty of Dentistry, The University of Hong Kong , Hong Kong SAR,","Division of Applied Oral Sciences & Community Dental Care, Faculty of Dentistry, The University of Hong Kong, Hong Kong SAR, China"],"affiliations":[{"raw_affiliation_string":"Division of Applied Oral Sciences and Community Dental Care, Faculty of Dentistry, The University of Hong Kong , Hong Kong SAR,","institution_ids":["https://openalex.org/I889458895"]},{"raw_affiliation_string":"Division of Applied Oral Sciences & Community Dental Care, Faculty of Dentistry, The University of Hong Kong, Hong Kong SAR, China","institution_ids":["https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101433660","display_name":"Jing Qin","orcid":"https://orcid.org/0000-0002-8327-8846"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]},{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jing Qin","raw_affiliation_strings":["School of Pharmaceutical Sciences (Shenzhen), Shenzhen Campus of Sun Yat-sen University , Shenzhen, Guangdong 518107,","School of Pharmaceutical Sciences (Shenzhen), Shenzhen Campus of Sun Yat-sen University, Shenzhen, Guangdong 518107, China"],"affiliations":[{"raw_affiliation_string":"School of Pharmaceutical Sciences (Shenzhen), Shenzhen Campus of Sun Yat-sen University , Shenzhen, Guangdong 518107,","institution_ids":["https://openalex.org/I180726961"]},{"raw_affiliation_string":"School of Pharmaceutical Sciences (Shenzhen), Shenzhen Campus of Sun Yat-sen University, Shenzhen, Guangdong 518107, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115602420","display_name":"Yong Liu","orcid":"https://orcid.org/0000-0001-6037-4926"},"institutions":[{"id":"https://openalex.org/I167274908","display_name":"Guangxi University for Nationalities","ror":"https://ror.org/0495efn48","country_code":"CN","type":"education","lineage":["https://openalex.org/I167274908"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yong Liu","raw_affiliation_strings":["School of Artificial Intelligence, Guangxi University for Nationalities , Nanning 530000,","School of Artificial Intelligence, Guangxi University for Nationalities, Nanning, China"],"affiliations":[{"raw_affiliation_string":"School of Artificial Intelligence, Guangxi University for Nationalities , Nanning 530000,","institution_ids":["https://openalex.org/I167274908"]},{"raw_affiliation_string":"School of Artificial Intelligence, Guangxi University for Nationalities, Nanning, China","institution_ids":["https://openalex.org/I167274908"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100704433","display_name":"Junwen Wang","orcid":"https://orcid.org/0000-0002-4432-4707"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]},{"id":"https://openalex.org/I4210141719","display_name":"University of Hong Kong - Shenzhen Hospital","ror":"https://ror.org/047w7d678","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210141719"]},{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["CN","HK"],"is_corresponding":false,"raw_author_name":"Junwen Wang","raw_affiliation_strings":["Division of Applied Oral Sciences and Community Dental Care, Faculty of Dentistry, The University of Hong Kong , Hong Kong SAR,","HKU Shenzhen Hospital , Shenzhen 518000,","State Key Laboratory of Pharmaceutical Biotechnology, The University of Hong Kong , Hong Kong SAR,","The , , University of Hong Kong, Hong Kong SAR,","Division of Applied Oral Sciences & Community Dental Care, Faculty of Dentistry, The University of Hong Kong, Hong Kong SAR, China","HKU Shenzhen Hospital, Shenzhen, China","State Key Laboratory of Pharmaceutical Biotechnology, The, University of Hong Kong, Hong Kong SAR, China"],"affiliations":[{"raw_affiliation_string":"Division of Applied Oral Sciences and Community Dental Care, Faculty of Dentistry, The University of Hong Kong , Hong Kong SAR,","institution_ids":["https://openalex.org/I889458895"]},{"raw_affiliation_string":"HKU Shenzhen Hospital , Shenzhen 518000,","institution_ids":["https://openalex.org/I4210141719"]},{"raw_affiliation_string":"State Key Laboratory of Pharmaceutical Biotechnology, The University of Hong Kong , Hong Kong SAR,","institution_ids":["https://openalex.org/I889458895"]},{"raw_affiliation_string":"The , , University of Hong Kong, Hong Kong SAR,","institution_ids":["https://openalex.org/I177725633","https://openalex.org/I889458895"]},{"raw_affiliation_string":"Division of Applied Oral Sciences & Community Dental Care, Faculty of Dentistry, The University of Hong Kong, Hong Kong SAR, China","institution_ids":["https://openalex.org/I889458895"]},{"raw_affiliation_string":"HKU Shenzhen Hospital, Shenzhen, China","institution_ids":["https://openalex.org/I4210141719"]},{"raw_affiliation_string":"State Key Laboratory of Pharmaceutical Biotechnology, The, University of Hong Kong, Hong Kong SAR, China","institution_ids":["https://openalex.org/I889458895"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5110832452"],"corresponding_institution_ids":["https://openalex.org/I167274908"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":2.7477,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.91056265,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"41","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6722831726074219},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.5464330315589905},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.4711757302284241},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4462837874889374},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.4233793318271637},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4222670793533325},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.4142938256263733},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.41019874811172485},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.39515265822410583},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3349171578884125},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2242860198020935},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15041863918304443},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.13232171535491943},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08718588948249817}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6722831726074219},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.5464330315589905},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.4711757302284241},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4462837874889374},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.4233793318271637},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4222670793533325},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.4142938256263733},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.41019874811172485},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.39515265822410583},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3349171578884125},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2242860198020935},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15041863918304443},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.13232171535491943},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08718588948249817},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btae708","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae708","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae708/60811203/btae708.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39585721","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39585721","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:hub.hku.hk:10722/353722","is_oa":true,"landing_page_url":"https://hub.hku.hk/handle/10722/353722","pdf_url":"http://hub.hku.hk/bitstream/10722/353722/1/content.pdf","source":{"id":"https://openalex.org/S4377196271","display_name":"The HKU Scholars Hub (University of Hong Kong)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I889458895","host_organization_name":"University of Hong Kong","host_organization_lineage":["https://openalex.org/I889458895"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11681936","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11681936","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11681936/pdf/btae708.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae708","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae708","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae708/60811203/btae708.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.4099999964237213,"display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G1063217684","display_name":null,"funder_award_id":"2207101590","funder_id":"https://openalex.org/F4320322170","funder_display_name":"University of Hong Kong"},{"id":"https://openalex.org/G2532324250","display_name":null,"funder_award_id":"6010309","funder_id":"https://openalex.org/F4320322170","funder_display_name":"University of Hong Kong"},{"id":"https://openalex.org/G6911122090","display_name":null,"funder_award_id":"207051059","funder_id":"https://openalex.org/F4320322170","funder_display_name":"University of Hong Kong"}],"funders":[{"id":"https://openalex.org/F4320322170","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4404690629.pdf","grobid_xml":"https://content.openalex.org/works/W4404690629.grobid-xml"},"referenced_works_count":53,"referenced_works":["https://openalex.org/W1250544340","https://openalex.org/W1611787727","https://openalex.org/W1836465849","https://openalex.org/W1857603824","https://openalex.org/W1979961519","https://openalex.org/W1986568494","https://openalex.org/W1994803330","https://openalex.org/W2000530224","https://openalex.org/W2011045729","https://openalex.org/W2067305633","https://openalex.org/W2080224054","https://openalex.org/W2081375228","https://openalex.org/W2088805436","https://openalex.org/W2130687290","https://openalex.org/W2148512505","https://openalex.org/W2155292823","https://openalex.org/W2166467949","https://openalex.org/W2168172687","https://openalex.org/W2338719532","https://openalex.org/W2572080171","https://openalex.org/W2765323781","https://openalex.org/W2858233514","https://openalex.org/W2895146543","https://openalex.org/W2945669687","https://openalex.org/W2957436444","https://openalex.org/W2963082289","https://openalex.org/W2995103612","https://openalex.org/W2995514860","https://openalex.org/W2997482957","https://openalex.org/W3000230289","https://openalex.org/W3002842489","https://openalex.org/W3006297561","https://openalex.org/W3015964336","https://openalex.org/W3093053585","https://openalex.org/W3157357317","https://openalex.org/W3167997087","https://openalex.org/W3177500196","https://openalex.org/W3185942550","https://openalex.org/W3199607358","https://openalex.org/W3212562354","https://openalex.org/W4205177317","https://openalex.org/W4283776301","https://openalex.org/W4286795917","https://openalex.org/W4289389616","https://openalex.org/W4297733535","https://openalex.org/W4321108300","https://openalex.org/W4323348775","https://openalex.org/W4385298573","https://openalex.org/W4385741356","https://openalex.org/W4387219655","https://openalex.org/W4387653299","https://openalex.org/W4388067722","https://openalex.org/W4390616026"],"related_works":["https://openalex.org/W4312103688","https://openalex.org/W4236696095","https://openalex.org/W3143779693","https://openalex.org/W2626808643","https://openalex.org/W2004064826","https://openalex.org/W3103727510","https://openalex.org/W97045569","https://openalex.org/W1527069879","https://openalex.org/W2946179579","https://openalex.org/W2047838177"],"abstract_inverted_index":{"The":[0],"source":[1],"code":[2],"of":[3],"TPepPro":[4],"is":[5],"available":[6],"at":[7],"https://github.com/wanglabhku/TPepPro.":[8]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":8}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
