{"id":"https://openalex.org/W4403332454","doi":"https://doi.org/10.1093/bioinformatics/btae574","title":"Chain-aware graph neural networks for molecular property prediction","display_name":"Chain-aware graph neural networks for molecular property prediction","publication_year":2024,"publication_date":"2024-10-01","ids":{"openalex":"https://openalex.org/W4403332454","doi":"https://doi.org/10.1093/bioinformatics/btae574","pmid":"https://pubmed.ncbi.nlm.nih.gov/39392786"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae574","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae574","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bioinformatics/btae574","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5107520428","display_name":"Honghao Wang","orcid":"https://orcid.org/0009-0009-3671-1027"},"institutions":[{"id":"https://openalex.org/I165745306","display_name":"Southwest Petroleum University","ror":"https://ror.org/03h17x602","country_code":"CN","type":"education","lineage":["https://openalex.org/I165745306"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Honghao Wang","raw_affiliation_strings":["School of Computer Science and Software Engineering, Southwest Petroleum University , Chengdu 610500,","School of Computer Science and Software Engineering, Southwest Petroleum University, Chengdu, 610500, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Software Engineering, Southwest Petroleum University , Chengdu 610500,","institution_ids":["https://openalex.org/I165745306"]},{"raw_affiliation_string":"School of Computer Science and Software Engineering, Southwest Petroleum University, Chengdu, 610500, China","institution_ids":["https://openalex.org/I165745306"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077212739","display_name":"Acong Zhang","orcid":"https://orcid.org/0009-0001-6654-8664"},"institutions":[{"id":"https://openalex.org/I165745306","display_name":"Southwest Petroleum University","ror":"https://ror.org/03h17x602","country_code":"CN","type":"education","lineage":["https://openalex.org/I165745306"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Acong Zhang","raw_affiliation_strings":["School of Computer Science and Software Engineering, Southwest Petroleum University , Chengdu 610500,","School of Computer Science and Software Engineering, Southwest Petroleum University, Chengdu, 610500, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Software Engineering, Southwest Petroleum University , Chengdu 610500,","institution_ids":["https://openalex.org/I165745306"]},{"raw_affiliation_string":"School of Computer Science and Software Engineering, Southwest Petroleum University, Chengdu, 610500, China","institution_ids":["https://openalex.org/I165745306"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003349227","display_name":"Yuan Zhong","orcid":"https://orcid.org/0000-0001-9441-1940"},"institutions":[{"id":"https://openalex.org/I165745306","display_name":"Southwest Petroleum University","ror":"https://ror.org/03h17x602","country_code":"CN","type":"education","lineage":["https://openalex.org/I165745306"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuan Zhong","raw_affiliation_strings":["School of Computer Science and Software Engineering, Southwest Petroleum University , Chengdu 610500,","School of Computer Science and Software Engineering, Southwest Petroleum University, Chengdu, 610500, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Software Engineering, Southwest Petroleum University , Chengdu 610500,","institution_ids":["https://openalex.org/I165745306"]},{"raw_affiliation_string":"School of Computer Science and Software Engineering, Southwest Petroleum University, Chengdu, 610500, China","institution_ids":["https://openalex.org/I165745306"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043155214","display_name":"Junlei Tang","orcid":"https://orcid.org/0000-0003-4114-4409"},"institutions":[{"id":"https://openalex.org/I165745306","display_name":"Southwest Petroleum University","ror":"https://ror.org/03h17x602","country_code":"CN","type":"education","lineage":["https://openalex.org/I165745306"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junlei Tang","raw_affiliation_strings":["College of Chemistry and Chemical Engineering, Southwest Petroleum University , Chengdu 610500,","College of Chemistry and Chemical Engineering, Southwest Petroleum University, Chengdu, 610500, China"],"affiliations":[{"raw_affiliation_string":"College of Chemistry and Chemical Engineering, Southwest Petroleum University , Chengdu 610500,","institution_ids":["https://openalex.org/I165745306"]},{"raw_affiliation_string":"College of Chemistry and Chemical Engineering, Southwest Petroleum University, Chengdu, 610500, China","institution_ids":["https://openalex.org/I165745306"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100710976","display_name":"Kai Zhang","orcid":"https://orcid.org/0000-0001-6297-4423"},"institutions":[{"id":"https://openalex.org/I66867065","display_name":"East China Normal University","ror":"https://ror.org/02n96ep67","country_code":"CN","type":"education","lineage":["https://openalex.org/I66867065"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Kai Zhang","raw_affiliation_strings":["School of Computer Science and Technology, East China Normal University , Shanghai 200062,","China School of Computer Science and Technology, East China Normal University, Chengdu, 200062 China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, East China Normal University , Shanghai 200062,","institution_ids":["https://openalex.org/I66867065"]},{"raw_affiliation_string":"China School of Computer Science and Technology, East China Normal University, Chengdu, 200062 China","institution_ids":["https://openalex.org/I66867065"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100614511","display_name":"Ping Li","orcid":"https://orcid.org/0000-0002-8391-6510"},"institutions":[{"id":"https://openalex.org/I165745306","display_name":"Southwest Petroleum University","ror":"https://ror.org/03h17x602","country_code":"CN","type":"education","lineage":["https://openalex.org/I165745306"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ping Li","raw_affiliation_strings":["School of Computer Science and Software Engineering, Southwest Petroleum University , Chengdu 610500,","School of Computer Science and Software Engineering, Southwest Petroleum University, Chengdu, 610500, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Software Engineering, Southwest Petroleum University , Chengdu 610500,","institution_ids":["https://openalex.org/I165745306"]},{"raw_affiliation_string":"School of Computer Science and Software Engineering, Southwest Petroleum University, Chengdu, 610500, China","institution_ids":["https://openalex.org/I165745306"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5100614511","https://openalex.org/A5100710976"],"corresponding_institution_ids":["https://openalex.org/I165745306","https://openalex.org/I66867065"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":3.4941,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.93554499,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"40","issue":"10","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13180","display_name":"Chemistry and Chemical Engineering","score":0.960099995136261,"subfield":{"id":"https://openalex.org/subfields/2304","display_name":"Environmental Chemistry"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8063267469406128},{"id":"https://openalex.org/keywords/feature-learning","display_name":"Feature learning","score":0.6138769388198853},{"id":"https://openalex.org/keywords/pooling","display_name":"Pooling","score":0.6053094863891602},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.5903041362762451},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5108603835105896},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4417828321456909},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.42020919919013977},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32822614908218384},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.32718777656555176}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8063267469406128},{"id":"https://openalex.org/C59404180","wikidata":"https://www.wikidata.org/wiki/Q17013334","display_name":"Feature learning","level":2,"score":0.6138769388198853},{"id":"https://openalex.org/C70437156","wikidata":"https://www.wikidata.org/wiki/Q7228652","display_name":"Pooling","level":2,"score":0.6053094863891602},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.5903041362762451},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5108603835105896},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4417828321456909},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.42020919919013977},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32822614908218384},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.32718777656555176},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btae574","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae574","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39392786","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39392786","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11494371","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11494371","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11494371/pdf/btae574.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae574","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae574","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6304150607","display_name":null,"funder_award_id":"62276099","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6939123297","display_name":null,"funder_award_id":"NSFC 62276099","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G970063791","display_name":null,"funder_award_id":"2023NSFSC0501","funder_id":"https://openalex.org/F4320329861","funder_display_name":"Natural Science Foundation of Sichuan Province"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320329861","display_name":"Natural Science Foundation of Sichuan Province","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W1975147762","https://openalex.org/W2022476850","https://openalex.org/W2064675550","https://openalex.org/W2187089797","https://openalex.org/W2594183968","https://openalex.org/W3087318293","https://openalex.org/W3095883070","https://openalex.org/W4213077304","https://openalex.org/W4214868967","https://openalex.org/W4253877692","https://openalex.org/W4294558607","https://openalex.org/W4306179830","https://openalex.org/W4321227311","https://openalex.org/W4366587646","https://openalex.org/W4379160762","https://openalex.org/W4379879032","https://openalex.org/W4385245566","https://openalex.org/W4396723768","https://openalex.org/W6738964360","https://openalex.org/W6739901393","https://openalex.org/W6784614190","https://openalex.org/W6797634910","https://openalex.org/W6844016247"],"related_works":["https://openalex.org/W2953234277","https://openalex.org/W2905271011","https://openalex.org/W3015684221","https://openalex.org/W3164948662","https://openalex.org/W4289536128","https://openalex.org/W3153597579","https://openalex.org/W4298151006","https://openalex.org/W4285218279","https://openalex.org/W4386136067","https://openalex.org/W4286858940"],"abstract_inverted_index":{"The":[0],"MolPath":[1],"code":[2],"is":[3],"publicly":[4],"available":[5],"at":[6],"https://github.com/Assassinswhh/Molpath.":[7]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":7}],"updated_date":"2026-04-18T07:56:08.524223","created_date":"2025-10-10T00:00:00"}
