{"id":"https://openalex.org/W4402553705","doi":"https://doi.org/10.1093/bioinformatics/btae547","title":"NeoaPred: a deep-learning framework for predicting immunogenic neoantigen based on surface and structural features of peptide\u2013human leukocyte antigen complexes","display_name":"NeoaPred: a deep-learning framework for predicting immunogenic neoantigen based on surface and structural features of peptide\u2013human leukocyte antigen complexes","publication_year":2024,"publication_date":"2024-09-01","ids":{"openalex":"https://openalex.org/W4402553705","doi":"https://doi.org/10.1093/bioinformatics/btae547","pmid":"https://pubmed.ncbi.nlm.nih.gov/39276157"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae547","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae547","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/40/9/btae547/59275126/btae547.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/40/9/btae547/59275126/btae547.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059284408","display_name":"Dawei Jiang","orcid":"https://orcid.org/0000-0002-9123-8393"},"institutions":[{"id":"https://openalex.org/I90610280","display_name":"South China University of Technology","ror":"https://ror.org/0530pts50","country_code":"CN","type":"education","lineage":["https://openalex.org/I90610280"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Dawei Jiang","raw_affiliation_strings":["School of Biology and Biological Engineering, South China University of Technology , Guangzhou 510006, China","South China University of Technology School of Biology and Biological Engineering, , Guangzhou, China"],"affiliations":[{"raw_affiliation_string":"School of Biology and Biological Engineering, South China University of Technology , Guangzhou 510006, China","institution_ids":["https://openalex.org/I90610280"]},{"raw_affiliation_string":"South China University of Technology School of Biology and Biological Engineering, , Guangzhou, China","institution_ids":["https://openalex.org/I90610280"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048840974","display_name":"Binbin Xi","orcid":"https://orcid.org/0000-0001-7290-7566"},"institutions":[{"id":"https://openalex.org/I90610280","display_name":"South China University of Technology","ror":"https://ror.org/0530pts50","country_code":"CN","type":"education","lineage":["https://openalex.org/I90610280"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Binbin Xi","raw_affiliation_strings":["School of Biology and Biological Engineering, South China University of Technology , Guangzhou 510006, China","South China University of Technology School of Biology and Biological Engineering, , Guangzhou, China"],"affiliations":[{"raw_affiliation_string":"School of Biology and Biological Engineering, South China University of Technology , Guangzhou 510006, China","institution_ids":["https://openalex.org/I90610280"]},{"raw_affiliation_string":"South China University of Technology School of Biology and Biological Engineering, , Guangzhou, China","institution_ids":["https://openalex.org/I90610280"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078812157","display_name":"W.C. Tan","orcid":null},"institutions":[{"id":"https://openalex.org/I90610280","display_name":"South China University of Technology","ror":"https://ror.org/0530pts50","country_code":"CN","type":"education","lineage":["https://openalex.org/I90610280"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenchong Tan","raw_affiliation_strings":["School of Biology and Biological Engineering, South China University of Technology , Guangzhou 510006, China","South China University of Technology School of Biology and Biological Engineering, , Guangzhou, China"],"affiliations":[{"raw_affiliation_string":"School of Biology and Biological Engineering, South China University of Technology , Guangzhou 510006, China","institution_ids":["https://openalex.org/I90610280"]},{"raw_affiliation_string":"South China University of Technology School of Biology and Biological Engineering, , Guangzhou, China","institution_ids":["https://openalex.org/I90610280"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031043041","display_name":"Zixi Chen","orcid":"https://orcid.org/0000-0001-6350-2997"},"institutions":[{"id":"https://openalex.org/I90610280","display_name":"South China University of Technology","ror":"https://ror.org/0530pts50","country_code":"CN","type":"education","lineage":["https://openalex.org/I90610280"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zixi Chen","raw_affiliation_strings":["School of Biology and Biological Engineering, South China University of Technology , Guangzhou 510006, China","South China University of Technology School of Biology and Biological Engineering, , Guangzhou, China"],"affiliations":[{"raw_affiliation_string":"School of Biology and Biological Engineering, South China University of Technology , Guangzhou 510006, China","institution_ids":["https://openalex.org/I90610280"]},{"raw_affiliation_string":"South China University of Technology School of Biology and Biological Engineering, , Guangzhou, China","institution_ids":["https://openalex.org/I90610280"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112599407","display_name":"Jinfen Wei","orcid":"https://orcid.org/0000-0002-0850-3775"},"institutions":[{"id":"https://openalex.org/I90610280","display_name":"South China University of Technology","ror":"https://ror.org/0530pts50","country_code":"CN","type":"education","lineage":["https://openalex.org/I90610280"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jinfen Wei","raw_affiliation_strings":["School of Biology and Biological Engineering, South China University of Technology , Guangzhou 510006, China","South China University of Technology School of Biology and Biological Engineering, , Guangzhou, China"],"affiliations":[{"raw_affiliation_string":"School of Biology and Biological Engineering, South China University of Technology , Guangzhou 510006, China","institution_ids":["https://openalex.org/I90610280"]},{"raw_affiliation_string":"South China University of Technology School of Biology and Biological Engineering, , Guangzhou, China","institution_ids":["https://openalex.org/I90610280"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016726162","display_name":"Meiling Hu","orcid":null},"institutions":[{"id":"https://openalex.org/I90610280","display_name":"South China University of Technology","ror":"https://ror.org/0530pts50","country_code":"CN","type":"education","lineage":["https://openalex.org/I90610280"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Meiling Hu","raw_affiliation_strings":["School of Biology and Biological Engineering, South China University of Technology , Guangzhou 510006, China","South China University of Technology School of Biology and Biological Engineering, , Guangzhou, China"],"affiliations":[{"raw_affiliation_string":"School of Biology and Biological Engineering, South China University of Technology , Guangzhou 510006, China","institution_ids":["https://openalex.org/I90610280"]},{"raw_affiliation_string":"South China University of Technology School of Biology and Biological Engineering, , Guangzhou, China","institution_ids":["https://openalex.org/I90610280"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045350828","display_name":"Xiaoyun Lu","orcid":"https://orcid.org/0000-0001-7931-6873"},"institutions":[{"id":"https://openalex.org/I159948400","display_name":"Jinan University","ror":"https://ror.org/02xe5ns62","country_code":"CN","type":"education","lineage":["https://openalex.org/I159948400"]},{"id":"https://openalex.org/I4210123333","display_name":"Ministry of Education","ror":"https://ror.org/036nq5137","country_code":"TH","type":"government","lineage":["https://openalex.org/I4210123333"]}],"countries":["CN","TH"],"is_corresponding":false,"raw_author_name":"Xiaoyun Lu","raw_affiliation_strings":["International Cooperative Laboratory of Traditional Chinese Medicine Modernization and Innovative Drug Discovery of Chinese Ministry of Education (MOE), School of Pharmacy, Jinan University , Guangzhou 510632, China","Jinan University International Cooperative Laboratory of Traditional Chinese Medicine Modernization and Innovative Drug Discovery of Chinese Ministry of Education (MOE), School of Pharmacy, , Guangzhou, China"],"affiliations":[{"raw_affiliation_string":"International Cooperative Laboratory of Traditional Chinese Medicine Modernization and Innovative Drug Discovery of Chinese Ministry of Education (MOE), School of Pharmacy, Jinan University , Guangzhou 510632, China","institution_ids":["https://openalex.org/I4210123333"]},{"raw_affiliation_string":"Jinan University International Cooperative Laboratory of Traditional Chinese Medicine Modernization and Innovative Drug Discovery of Chinese Ministry of Education (MOE), School of Pharmacy, , Guangzhou, China","institution_ids":["https://openalex.org/I159948400"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100319479","display_name":"Dong Chen","orcid":"https://orcid.org/0000-0003-1198-6058"},"institutions":[{"id":"https://openalex.org/I90610280","display_name":"South China University of Technology","ror":"https://ror.org/0530pts50","country_code":"CN","type":"education","lineage":["https://openalex.org/I90610280"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dong Chen","raw_affiliation_strings":["Fangrui Institute of Innovative Drugs, South China University of Technology , Guangzhou 510006, China","South China University of Technology Fangrui Institute of Innovative Drugs, , Guangzhou, China"],"affiliations":[{"raw_affiliation_string":"Fangrui Institute of Innovative Drugs, South China University of Technology , Guangzhou 510006, China","institution_ids":["https://openalex.org/I90610280"]},{"raw_affiliation_string":"South China University of Technology Fangrui Institute of Innovative Drugs, , Guangzhou, China","institution_ids":["https://openalex.org/I90610280"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046396291","display_name":"Hongmin Cai","orcid":"https://orcid.org/0000-0002-2747-7234"},"institutions":[{"id":"https://openalex.org/I90610280","display_name":"South China University of Technology","ror":"https://ror.org/0530pts50","country_code":"CN","type":"education","lineage":["https://openalex.org/I90610280"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongmin Cai","raw_affiliation_strings":["School of Computer Science and Engineering, South China University of Technology , Guangzhou 510006, China","South China University of Technology School of Computer Science and Engineering, , Guangzhou, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, South China University of Technology , Guangzhou 510006, China","institution_ids":["https://openalex.org/I90610280"]},{"raw_affiliation_string":"South China University of Technology School of Computer Science and Engineering, , Guangzhou, China","institution_ids":["https://openalex.org/I90610280"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008247363","display_name":"Hongli Du","orcid":"https://orcid.org/0000-0002-6419-0160"},"institutions":[{"id":"https://openalex.org/I90610280","display_name":"South China University of Technology","ror":"https://ror.org/0530pts50","country_code":"CN","type":"education","lineage":["https://openalex.org/I90610280"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongli Du","raw_affiliation_strings":["School of Biology and Biological Engineering, South China University of Technology , Guangzhou 510006, China","South China University of Technology School of Biology and Biological Engineering, , Guangzhou, China"],"affiliations":[{"raw_affiliation_string":"School of Biology and Biological Engineering, South China University of Technology , Guangzhou 510006, China","institution_ids":["https://openalex.org/I90610280"]},{"raw_affiliation_string":"South China University of Technology School of Biology and Biological Engineering, , Guangzhou, China","institution_ids":["https://openalex.org/I90610280"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5059284408"],"corresponding_institution_ids":["https://openalex.org/I90610280"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":4.1301,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.9490054,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"40","issue":"9","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/immunogenicity","display_name":"Immunogenicity","score":0.9088354110717773},{"id":"https://openalex.org/keywords/human-leukocyte-antigen","display_name":"Human leukocyte antigen","score":0.8029835820198059},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.5769321322441101},{"id":"https://openalex.org/keywords/cancer-immunotherapy","display_name":"Cancer immunotherapy","score":0.5412918925285339},{"id":"https://openalex.org/keywords/immunotherapy","display_name":"Immunotherapy","score":0.5278211236000061},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.5162908434867859},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.5001466274261475},{"id":"https://openalex.org/keywords/somatic-cell","display_name":"Somatic cell","score":0.4637470841407776},{"id":"https://openalex.org/keywords/major-histocompatibility-complex","display_name":"Major histocompatibility complex","score":0.4593953788280487},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4337303638458252},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.41831281781196594},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.4126177430152893},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3812890946865082},{"id":"https://openalex.org/keywords/cancer-research","display_name":"Cancer research","score":0.37776684761047363},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.22220379114151},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14469903707504272},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.07506772875785828}],"concepts":[{"id":"https://openalex.org/C2780868878","wikidata":"https://www.wikidata.org/wiki/Q1660197","display_name":"Immunogenicity","level":3,"score":0.9088354110717773},{"id":"https://openalex.org/C188280979","wikidata":"https://www.wikidata.org/wiki/Q911125","display_name":"Human leukocyte antigen","level":3,"score":0.8029835820198059},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.5769321322441101},{"id":"https://openalex.org/C2780674031","wikidata":"https://www.wikidata.org/wiki/Q2012719","display_name":"Cancer immunotherapy","level":4,"score":0.5412918925285339},{"id":"https://openalex.org/C2777701055","wikidata":"https://www.wikidata.org/wiki/Q1427096","display_name":"Immunotherapy","level":3,"score":0.5278211236000061},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.5162908434867859},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.5001466274261475},{"id":"https://openalex.org/C134305767","wikidata":"https://www.wikidata.org/wiki/Q725508","display_name":"Somatic cell","level":3,"score":0.4637470841407776},{"id":"https://openalex.org/C207936829","wikidata":"https://www.wikidata.org/wiki/Q423163","display_name":"Major histocompatibility complex","level":3,"score":0.4593953788280487},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4337303638458252},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.41831281781196594},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.4126177430152893},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3812890946865082},{"id":"https://openalex.org/C502942594","wikidata":"https://www.wikidata.org/wiki/Q3421914","display_name":"Cancer research","level":1,"score":0.37776684761047363},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.22220379114151},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14469903707504272},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.07506772875785828}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000951","descriptor_name":"Antigens, Neoplasm","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000951","descriptor_name":"Antigens, Neoplasm","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000951","descriptor_name":"Antigens, Neoplasm","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000951","descriptor_name":"Antigens, Neoplasm","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000951","descriptor_name":"Antigens, Neoplasm","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000951","descriptor_name":"Antigens, Neoplasm","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000951","descriptor_name":"Antigens, Neoplasm","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000951","descriptor_name":"Antigens, Neoplasm","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000951","descriptor_name":"Antigens, Neoplasm","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000951","descriptor_name":"Antigens, Neoplasm","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000951","descriptor_name":"Antigens, Neoplasm","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000951","descriptor_name":"Antigens, Neoplasm","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btae547","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae547","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/40/9/btae547/59275126/btae547.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39276157","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39276157","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11419954","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11419954","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11419954/pdf/btae547.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae547","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae547","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/40/9/btae547/59275126/btae547.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.7799999713897705,"id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4402553705.pdf","grobid_xml":"https://content.openalex.org/works/W4402553705.grobid-xml"},"referenced_works_count":53,"referenced_works":["https://openalex.org/W2007026865","https://openalex.org/W2021954541","https://openalex.org/W2041617144","https://openalex.org/W2049553585","https://openalex.org/W2055043387","https://openalex.org/W2072784497","https://openalex.org/W2079018735","https://openalex.org/W2079696222","https://openalex.org/W2105525514","https://openalex.org/W2114850508","https://openalex.org/W2130479394","https://openalex.org/W2140673705","https://openalex.org/W2161151688","https://openalex.org/W2404396229","https://openalex.org/W2599601523","https://openalex.org/W2724264513","https://openalex.org/W2748343486","https://openalex.org/W2766564423","https://openalex.org/W2767891987","https://openalex.org/W2793742921","https://openalex.org/W2797967795","https://openalex.org/W2804822363","https://openalex.org/W2898389621","https://openalex.org/W2904711643","https://openalex.org/W2904803926","https://openalex.org/W2921909891","https://openalex.org/W2962706558","https://openalex.org/W2968781851","https://openalex.org/W2977541300","https://openalex.org/W2979330780","https://openalex.org/W2992752586","https://openalex.org/W3024570138","https://openalex.org/W3042910002","https://openalex.org/W3091991776","https://openalex.org/W3116512470","https://openalex.org/W3127841695","https://openalex.org/W3177828909","https://openalex.org/W3186179742","https://openalex.org/W3211795435","https://openalex.org/W3217772429","https://openalex.org/W4210348552","https://openalex.org/W4211143846","https://openalex.org/W4229451133","https://openalex.org/W4293003482","https://openalex.org/W4313547267","https://openalex.org/W4366235410","https://openalex.org/W4367049161","https://openalex.org/W4384934897","https://openalex.org/W4385830321","https://openalex.org/W4389611046","https://openalex.org/W4396721167","https://openalex.org/W6739901393","https://openalex.org/W6845990398"],"related_works":["https://openalex.org/W1581415616","https://openalex.org/W1552738310","https://openalex.org/W4250292386","https://openalex.org/W2470318958","https://openalex.org/W2428121789","https://openalex.org/W2030908446","https://openalex.org/W4205567707","https://openalex.org/W3042894437","https://openalex.org/W2403806215","https://openalex.org/W2381567441"],"abstract_inverted_index":{"The":[0],"source":[1],"code":[2],"is":[3,11],"released":[4],"under":[5],"an":[6],"Apache":[7],"v2.0":[8],"license":[9],"and":[10],"available":[12],"at":[13],"the":[14],"GitHub":[15],"repository":[16],"(https://github.com/Dulab2020/NeoaPred).":[17]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":13}],"updated_date":"2026-04-09T08:11:56.329763","created_date":"2024-09-16T00:00:00"}
