{"id":"https://openalex.org/W4401535525","doi":"https://doi.org/10.1093/bioinformatics/btae510","title":"Publication-ready single nucleotide polymorphism visualization with snipit","display_name":"Publication-ready single nucleotide polymorphism visualization with snipit","publication_year":2024,"publication_date":"2024-08-01","ids":{"openalex":"https://openalex.org/W4401535525","doi":"https://doi.org/10.1093/bioinformatics/btae510","pmid":"https://pubmed.ncbi.nlm.nih.gov/39137137"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae510","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae510","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bioinformatics/btae510","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064124046","display_name":"\u00c1ine O\u2019Toole","orcid":"https://orcid.org/0000-0001-8083-474X"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"\u00c1ine O\u2019Toole","raw_affiliation_strings":["Institute of Ecology and Evolution, University of Edinburgh , Edinburgh, EH93FL, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Institute of Ecology and Evolution, University of Edinburgh , Edinburgh, EH93FL, United Kingdom","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031878431","display_name":"Ammar Aziz","orcid":null},"institutions":[{"id":"https://openalex.org/I1320473756","display_name":"The Royal Melbourne Hospital","ror":"https://ror.org/005bvs909","country_code":"AU","type":"funder","lineage":["https://openalex.org/I1320473756","https://openalex.org/I4210158168"]},{"id":"https://openalex.org/I4210088630","display_name":"Victorian Infectious Diseases Reference Laboratory","ror":"https://ror.org/005ynf375","country_code":"AU","type":"facility","lineage":["https://openalex.org/I4210088630"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Ammar Aziz","raw_affiliation_strings":["Victorian Infectious Diseases Reference Laboratory, The Royal Melbourne Hospital , Parkville, Victoria, VIC 3052, Australia"],"affiliations":[{"raw_affiliation_string":"Victorian Infectious Diseases Reference Laboratory, The Royal Melbourne Hospital , Parkville, Victoria, VIC 3052, Australia","institution_ids":["https://openalex.org/I1320473756","https://openalex.org/I4210088630"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086677370","display_name":"Daniel Maloney","orcid":"https://orcid.org/0009-0002-3239-2937"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Daniel Maloney","raw_affiliation_strings":["Institute of Ecology and Evolution, University of Edinburgh , Edinburgh, EH93FL, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Institute of Ecology and Evolution, University of Edinburgh , Edinburgh, EH93FL, United Kingdom","institution_ids":["https://openalex.org/I98677209"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5064124046"],"corresponding_institution_ids":["https://openalex.org/I98677209"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":4.5021,"has_fulltext":true,"cited_by_count":20,"citation_normalized_percentile":{"value":0.95532081,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"40","issue":"8","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.8707255125045776},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7651479244232178},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.7500641345977783},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.699116587638855},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.684265673160553},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.51961749792099},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.5187049508094788},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.4986264705657959},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.4789574444293976},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.4140642583370209},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.40943270921707153},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2252429723739624},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1438259482383728},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13020125031471252},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.09209230542182922}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.8707255125045776},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7651479244232178},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.7500641345977783},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.699116587638855},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.684265673160553},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.51961749792099},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.5187049508094788},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.4986264705657959},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.4789574444293976},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.4140642583370209},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.40943270921707153},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2252429723739624},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1438259482383728},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13020125031471252},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.09209230542182922},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btae510","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae510","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39137137","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39137137","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11349183","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11349183","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11349183/pdf/btae510.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:pure.ed.ac.uk:openaire/1f91423a-cd0d-4632-aee3-2f1d0db4147c","is_oa":true,"landing_page_url":"https://hdl.handle.net/20.500.11820/1f91423a-cd0d-4632-aee3-2f1d0db4147c","pdf_url":"https://www.research.ed.ac.uk/files/468672981/btae510.pdf","source":{"id":"https://openalex.org/S4406922455","display_name":"Edinburgh Research Explorer","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"O'Toole, \u00c1, Aziz, A & Maloney, D 2024, 'Publication-ready single nucleotide polymorphism visualization with snipit', Bioinformatics, vol. 40, no. 8, btae510. https://doi.org/10.1093/bioinformatics/btae510","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.ed.ac.uk:publications/1f91423a-cd0d-4632-aee3-2f1d0db4147c","is_oa":true,"landing_page_url":"https://www.research.ed.ac.uk/en/publications/1f91423a-cd0d-4632-aee3-2f1d0db4147c","pdf_url":null,"source":{"id":"https://openalex.org/S4406922455","display_name":"Edinburgh Research Explorer","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"O'Toole, \u00c1, Aziz, A & Maloney, D 2024, 'Publication-ready single nucleotide polymorphism visualization with snipit', Bioinformatics, vol. 40, no. 8, btae510. https://doi.org/10.1093/bioinformatics/btae510","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae510","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae510","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G311341733","display_name":null,"funder_award_id":"203783/Z/16/Z","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G339059223","display_name":null,"funder_award_id":"Z/17/Z","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G4695743940","display_name":null,"funder_award_id":"206298/Z/17/Z","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G7405985112","display_name":null,"funder_award_id":"206298","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"}],"funders":[{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W2096525273","https://openalex.org/W2128016314","https://openalex.org/W3090988174","https://openalex.org/W3173460203","https://openalex.org/W3176993778","https://openalex.org/W4220669367","https://openalex.org/W4245803912","https://openalex.org/W4248160505","https://openalex.org/W4280529910","https://openalex.org/W4282972881","https://openalex.org/W4283360071","https://openalex.org/W4283515938","https://openalex.org/W4296034208","https://openalex.org/W4300860849","https://openalex.org/W4310460461","https://openalex.org/W4312059163","https://openalex.org/W4318203687","https://openalex.org/W4327683190","https://openalex.org/W4360752230","https://openalex.org/W4376872235","https://openalex.org/W4380634074","https://openalex.org/W4386086390","https://openalex.org/W4393241514","https://openalex.org/W6783998356","https://openalex.org/W6853472678","https://openalex.org/W6958799704"],"related_works":["https://openalex.org/W3080200277","https://openalex.org/W2132241624","https://openalex.org/W3034716491","https://openalex.org/W4392173297","https://openalex.org/W4311683883","https://openalex.org/W4240625990","https://openalex.org/W4212902261","https://openalex.org/W4400311305","https://openalex.org/W2113128227","https://openalex.org/W4311938462"],"abstract_inverted_index":{"Snipit":[0],"is":[1,7],"an":[2],"open-source":[3],"python-based":[4],"tool":[5],"that":[6],"hosted":[8],"on":[9,33],"GitHub":[10,35],"under":[11],"a":[12],"GNU-GPL":[13],"3.0":[14],"licence":[15],"(https://github.com/aineniamh/snipit).":[16],"It":[17],"can":[18,30],"be":[19,31],"installed":[20],"from":[21],"PyPi":[22],"using":[23],"pip.":[24],"Source":[25],"code":[26],"and":[27],"additional":[28],"documentation":[29],"found":[32],"the":[34],"repository.":[36]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":16},{"year":2024,"cited_by_count":1}],"updated_date":"2026-04-19T08:26:33.389920","created_date":"2024-08-14T00:00:00"}
