{"id":"https://openalex.org/W4390631588","doi":"https://doi.org/10.1093/bioinformatics/btad782","title":"M-Ionic: prediction of metal-ion-binding sites from sequence using residue embeddings","display_name":"M-Ionic: prediction of metal-ion-binding sites from sequence using residue embeddings","publication_year":2024,"publication_date":"2024-01-01","ids":{"openalex":"https://openalex.org/W4390631588","doi":"https://doi.org/10.1093/bioinformatics/btad782","pmid":"https://pubmed.ncbi.nlm.nih.gov/38175787"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad782","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad782","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad782/55024491/btad782.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad782/55024491/btad782.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004468991","display_name":"Aditi Shenoy","orcid":"https://orcid.org/0000-0001-7748-2501"},"institutions":[{"id":"https://openalex.org/I161593684","display_name":"Stockholm University","ror":"https://ror.org/05f0yaq80","country_code":"SE","type":"education","lineage":["https://openalex.org/I161593684"]},{"id":"https://openalex.org/I2800139495","display_name":"Science for Life Laboratory","ror":"https://ror.org/04ev03g22","country_code":"SE","type":"facility","lineage":["https://openalex.org/I2800139495"]}],"countries":["SE"],"is_corresponding":true,"raw_author_name":"Aditi Shenoy","raw_affiliation_strings":["Science for Life Laboratory and Department of Biochemistry and Biophysics, Stockholm University , Solna 17121, Sweden","Science for Life Laboratory and Department of Biochemistry and Biophysics, Stockholm University, Solna, 171 21, Sweden"],"affiliations":[{"raw_affiliation_string":"Science for Life Laboratory and Department of Biochemistry and Biophysics, Stockholm University , Solna 17121, Sweden","institution_ids":["https://openalex.org/I2800139495"]},{"raw_affiliation_string":"Science for Life Laboratory and Department of Biochemistry and Biophysics, Stockholm University, Solna, 171 21, Sweden","institution_ids":["https://openalex.org/I2800139495","https://openalex.org/I161593684"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022346737","display_name":"Yogesh Kalakoti","orcid":"https://orcid.org/0000-0003-2192-7887"},"institutions":[{"id":"https://openalex.org/I68891433","display_name":"Indian Institute of Technology Delhi","ror":"https://ror.org/049tgcd06","country_code":"IN","type":"education","lineage":["https://openalex.org/I68891433"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Yogesh Kalakoti","raw_affiliation_strings":["Department of Biochemical Engineering & Biotechnology, Indian Institute of Technology (IIT) Delhi , New Delhi 110016, India","Department of Biochemical Engineering & Biotechnology, Indian Institute of Technology (IIT) Delhi, New Delhi, 110016, India"],"affiliations":[{"raw_affiliation_string":"Department of Biochemical Engineering & Biotechnology, Indian Institute of Technology (IIT) Delhi , New Delhi 110016, India","institution_ids":["https://openalex.org/I68891433"]},{"raw_affiliation_string":"Department of Biochemical Engineering & Biotechnology, Indian Institute of Technology (IIT) Delhi, New Delhi, 110016, India","institution_ids":["https://openalex.org/I68891433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029172082","display_name":"Durai Sundar","orcid":null},"institutions":[{"id":"https://openalex.org/I68891433","display_name":"Indian Institute of Technology Delhi","ror":"https://ror.org/049tgcd06","country_code":"IN","type":"education","lineage":["https://openalex.org/I68891433"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Durai Sundar","raw_affiliation_strings":["Department of Biochemical Engineering & Biotechnology, Indian Institute of Technology (IIT) Delhi , New Delhi 110016, India","Yardi School of Artificial Intelligence, Indian Institute of Technology (IIT) Delhi , New Delhi 110016, India","Department of Biochemical Engineering & Biotechnology, Indian Institute of Technology (IIT) Delhi, New Delhi, 110016, India","Yardi School of Artificial Intelligence, Indian Institute of Technology (IIT) Delhi, New Delhi, 110016, India"],"affiliations":[{"raw_affiliation_string":"Department of Biochemical Engineering & Biotechnology, Indian Institute of Technology (IIT) Delhi , New Delhi 110016, India","institution_ids":["https://openalex.org/I68891433"]},{"raw_affiliation_string":"Yardi School of Artificial Intelligence, Indian Institute of Technology (IIT) Delhi , New Delhi 110016, India","institution_ids":["https://openalex.org/I68891433"]},{"raw_affiliation_string":"Department of Biochemical Engineering & Biotechnology, Indian Institute of Technology (IIT) Delhi, New Delhi, 110016, India","institution_ids":["https://openalex.org/I68891433"]},{"raw_affiliation_string":"Yardi School of Artificial Intelligence, Indian Institute of Technology (IIT) Delhi, New Delhi, 110016, India","institution_ids":["https://openalex.org/I68891433"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5072903725","display_name":"Arne Elofsson","orcid":"https://orcid.org/0000-0002-7115-9751"},"institutions":[{"id":"https://openalex.org/I161593684","display_name":"Stockholm University","ror":"https://ror.org/05f0yaq80","country_code":"SE","type":"education","lineage":["https://openalex.org/I161593684"]},{"id":"https://openalex.org/I2800139495","display_name":"Science for Life Laboratory","ror":"https://ror.org/04ev03g22","country_code":"SE","type":"facility","lineage":["https://openalex.org/I2800139495"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Arne Elofsson","raw_affiliation_strings":["Science for Life Laboratory and Department of Biochemistry and Biophysics, Stockholm University , Solna 17121, Sweden","Science for Life Laboratory and Department of Biochemistry and Biophysics, Stockholm University, Solna, 171 21, Sweden"],"affiliations":[{"raw_affiliation_string":"Science for Life Laboratory and Department of Biochemistry and Biophysics, Stockholm University , Solna 17121, Sweden","institution_ids":["https://openalex.org/I2800139495"]},{"raw_affiliation_string":"Science for Life Laboratory and Department of Biochemistry and Biophysics, Stockholm University, Solna, 171 21, Sweden","institution_ids":["https://openalex.org/I2800139495","https://openalex.org/I161593684"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5004468991"],"corresponding_institution_ids":["https://openalex.org/I161593684","https://openalex.org/I2800139495"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":5.2664,"has_fulltext":true,"cited_by_count":23,"citation_normalized_percentile":{"value":0.9635863,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"40","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.649566650390625},{"id":"https://openalex.org/keywords/metal","display_name":"Metal","score":0.5032669901847839},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.48000210523605347},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4530791640281677},{"id":"https://openalex.org/keywords/residue","display_name":"Residue (chemistry)","score":0.4518425762653351},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.4482630491256714},{"id":"https://openalex.org/keywords/binding-site","display_name":"Binding site","score":0.4421878755092621},{"id":"https://openalex.org/keywords/ionic-bonding","display_name":"Ionic bonding","score":0.43094444274902344},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.38481032848358154},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.37556108832359314},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.32179105281829834},{"id":"https://openalex.org/keywords/ion","display_name":"Ion","score":0.24411356449127197},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21728608012199402},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.1760399341583252}],"concepts":[{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.649566650390625},{"id":"https://openalex.org/C544153396","wikidata":"https://www.wikidata.org/wiki/Q11426","display_name":"Metal","level":2,"score":0.5032669901847839},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.48000210523605347},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4530791640281677},{"id":"https://openalex.org/C2781338088","wikidata":"https://www.wikidata.org/wiki/Q903495","display_name":"Residue (chemistry)","level":2,"score":0.4518425762653351},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.4482630491256714},{"id":"https://openalex.org/C107824862","wikidata":"https://www.wikidata.org/wiki/Q616005","display_name":"Binding site","level":2,"score":0.4421878755092621},{"id":"https://openalex.org/C2182769","wikidata":"https://www.wikidata.org/wiki/Q62500","display_name":"Ionic bonding","level":3,"score":0.43094444274902344},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.38481032848358154},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.37556108832359314},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.32179105281829834},{"id":"https://openalex.org/C145148216","wikidata":"https://www.wikidata.org/wiki/Q36496","display_name":"Ion","level":2,"score":0.24411356449127197},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21728608012199402},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.1760399341583252},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007477","descriptor_name":"Ions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007477","descriptor_name":"Ions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007477","descriptor_name":"Ions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007477","descriptor_name":"Ions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007477","descriptor_name":"Ions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008670","descriptor_name":"Metals","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D008670","descriptor_name":"Metals","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D008670","descriptor_name":"Metals","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D008670","descriptor_name":"Metals","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D008670","descriptor_name":"Metals","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D008670","descriptor_name":"Metals","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D008670","descriptor_name":"Metals","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D008670","descriptor_name":"Metals","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D008670","descriptor_name":"Metals","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D008670","descriptor_name":"Metals","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btad782","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad782","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad782/55024491/btad782.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38175787","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38175787","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10792727","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10792727","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10792727/pdf/btad782.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad782","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad782","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad782/55024491/btad782.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1174531324","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320322327","funder_display_name":"Knut och Alice Wallenbergs Stiftelse"},{"id":"https://openalex.org/G1918990611","display_name":null,"funder_award_id":"2021\u201303979","funder_id":"https://openalex.org/F4320322581","funder_display_name":"Vetenskapsr\u00e5det"},{"id":"https://openalex.org/G3225332876","display_name":null,"funder_award_id":"2021-03979","funder_id":"https://openalex.org/F4320322581","funder_display_name":"Vetenskapsr\u00e5det"},{"id":"https://openalex.org/G3467366347","display_name":null,"funder_award_id":"SNIC 2021/5-297","funder_id":"https://openalex.org/F4320322225","funder_display_name":"Link\u00f6pings Universitet"},{"id":"https://openalex.org/G7228997265","display_name":null,"funder_award_id":"Vetenskapsr\u00e5","funder_id":"https://openalex.org/F4320322581","funder_display_name":"Vetenskapsr\u00e5det"},{"id":"https://openalex.org/G8080935424","display_name":null,"funder_award_id":"unknown","funder_id":"https://openalex.org/F4320322581","funder_display_name":"Vetenskapsr\u00e5det"},{"id":"https://openalex.org/G8089770579","display_name":null,"funder_award_id":"Berzelius-2021-29","funder_id":"https://openalex.org/F4320322581","funder_display_name":"Vetenskapsr\u00e5det"}],"funders":[{"id":"https://openalex.org/F4320322225","display_name":"Link\u00f6pings Universitet","ror":"https://ror.org/05ynxx418"},{"id":"https://openalex.org/F4320322327","display_name":"Knut och Alice Wallenbergs Stiftelse","ror":"https://ror.org/004hzzk67"},{"id":"https://openalex.org/F4320322581","display_name":"Vetenskapsr\u00e5det","ror":"https://ror.org/03zttf063"},{"id":"https://openalex.org/F4320336380","display_name":"National Supercomputer Centre, Link\u00f6pings Universitet","ror":null}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4390631588.pdf"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W1979619822","https://openalex.org/W2018661561","https://openalex.org/W2043638247","https://openalex.org/W2051210555","https://openalex.org/W2055043387","https://openalex.org/W2064186839","https://openalex.org/W2070370023","https://openalex.org/W2130479394","https://openalex.org/W2151043202","https://openalex.org/W2156125289","https://openalex.org/W2166637863","https://openalex.org/W2170672962","https://openalex.org/W2472103865","https://openalex.org/W2557595285","https://openalex.org/W2612690371","https://openalex.org/W2751942010","https://openalex.org/W2766574514","https://openalex.org/W2900343982","https://openalex.org/W2944948391","https://openalex.org/W2950797462","https://openalex.org/W2962368277","https://openalex.org/W3146944767","https://openalex.org/W3177500196","https://openalex.org/W4205989901","https://openalex.org/W4210702584","https://openalex.org/W4225438928","https://openalex.org/W4225833995","https://openalex.org/W4242765109","https://openalex.org/W4281750795","https://openalex.org/W4288690996","https://openalex.org/W4303645584","https://openalex.org/W4307180312"],"related_works":["https://openalex.org/W2053028024","https://openalex.org/W2011602722","https://openalex.org/W2024383575","https://openalex.org/W1965617697","https://openalex.org/W2072002764","https://openalex.org/W2012033675","https://openalex.org/W2033162017","https://openalex.org/W2073512219","https://openalex.org/W1991987880","https://openalex.org/W2061704447"],"abstract_inverted_index":{"M-Ionic":[0],"can":[1],"be":[2],"used":[3],"on":[4],"your":[5],"protein":[6],"of":[7],"interest":[8],"using":[9],"a":[10],"Google":[11],"Colab":[12],"Notebook":[13],"(https://bit.ly/40FrRbK).":[14],"The":[15],"GitHub":[16],"repository":[17],"(https://github.com/TeamSundar/m-ionic)":[18],"contains":[19],"all":[20],"code":[21],"and":[22],"data.":[23]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":14},{"year":2024,"cited_by_count":5}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
