{"id":"https://openalex.org/W4389453022","doi":"https://doi.org/10.1093/bioinformatics/btad726","title":"invMap: a sensitive mapping tool for long noisy reads with inversion structural variants","display_name":"invMap: a sensitive mapping tool for long noisy reads with inversion structural variants","publication_year":2023,"publication_date":"2023-12-01","ids":{"openalex":"https://openalex.org/W4389453022","doi":"https://doi.org/10.1093/bioinformatics/btad726"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad726","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad726","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad726/54060577/btad726.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad726/54060577/btad726.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071217704","display_name":"Ze\u2010Gang Wei","orcid":null},"institutions":[{"id":"https://openalex.org/I2799293361","display_name":"Baoji University of Arts and Sciences","ror":"https://ror.org/05nx0xs09","country_code":"CN","type":"education","lineage":["https://openalex.org/I2799293361"]},{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["CA","CN"],"is_corresponding":true,"raw_author_name":"Ze-Gang Wei","raw_affiliation_strings":["Division of Biomedical Engineering, Department of Computer Science and Department of Mechanical Engineering, University of Saskatchewan , Saskatoon, SK S7N 5A9, Canada","School of Physics and Optoelectronics Technology, Baoji University of Arts and Sciences , Baoji 721016, China","School of Physics and Optoelectronics Technology, Baoji University of Arts and Sciences, Baoji, 721016, China"],"affiliations":[{"raw_affiliation_string":"Division of Biomedical Engineering, Department of Computer Science and Department of Mechanical Engineering, University of Saskatchewan , Saskatoon, SK S7N 5A9, Canada","institution_ids":["https://openalex.org/I32625721"]},{"raw_affiliation_string":"School of Physics and Optoelectronics Technology, Baoji University of Arts and Sciences , Baoji 721016, China","institution_ids":["https://openalex.org/I2799293361"]},{"raw_affiliation_string":"School of Physics and Optoelectronics Technology, Baoji University of Arts and Sciences, Baoji, 721016, China","institution_ids":["https://openalex.org/I2799293361"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101276593","display_name":"Peng-Yu Bu","orcid":null},"institutions":[{"id":"https://openalex.org/I2799293361","display_name":"Baoji University of Arts and Sciences","ror":"https://ror.org/05nx0xs09","country_code":"CN","type":"education","lineage":["https://openalex.org/I2799293361"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Peng-Yu Bu","raw_affiliation_strings":["School of Physics and Optoelectronics Technology, Baoji University of Arts and Sciences , Baoji 721016, China","School of Physics and Optoelectronics Technology, Baoji University of Arts and Sciences, Baoji, 721016, China"],"affiliations":[{"raw_affiliation_string":"School of Physics and Optoelectronics Technology, Baoji University of Arts and Sciences , Baoji 721016, China","institution_ids":["https://openalex.org/I2799293361"]},{"raw_affiliation_string":"School of Physics and Optoelectronics Technology, Baoji University of Arts and Sciences, Baoji, 721016, China","institution_ids":["https://openalex.org/I2799293361"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101965595","display_name":"Xiao-Dan Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I2799293361","display_name":"Baoji University of Arts and Sciences","ror":"https://ror.org/05nx0xs09","country_code":"CN","type":"education","lineage":["https://openalex.org/I2799293361"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiao-Dan Zhang","raw_affiliation_strings":["School of Physics and Optoelectronics Technology, Baoji University of Arts and Sciences , Baoji 721016, China","School of Physics and Optoelectronics Technology, Baoji University of Arts and Sciences, Baoji, 721016, China"],"affiliations":[{"raw_affiliation_string":"School of Physics and Optoelectronics Technology, Baoji University of Arts and Sciences , Baoji 721016, China","institution_ids":["https://openalex.org/I2799293361"]},{"raw_affiliation_string":"School of Physics and Optoelectronics Technology, Baoji University of Arts and Sciences, Baoji, 721016, China","institution_ids":["https://openalex.org/I2799293361"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115602474","display_name":"Fei Liu","orcid":"https://orcid.org/0000-0003-1175-4070"},"institutions":[{"id":"https://openalex.org/I2799293361","display_name":"Baoji University of Arts and Sciences","ror":"https://ror.org/05nx0xs09","country_code":"CN","type":"education","lineage":["https://openalex.org/I2799293361"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fei Liu","raw_affiliation_strings":["School of Physics and Optoelectronics Technology, Baoji University of Arts and Sciences , Baoji 721016, China","School of Physics and Optoelectronics Technology, Baoji University of Arts and Sciences, Baoji, 721016, China"],"affiliations":[{"raw_affiliation_string":"School of Physics and Optoelectronics Technology, Baoji University of Arts and Sciences , Baoji 721016, China","institution_ids":["https://openalex.org/I2799293361"]},{"raw_affiliation_string":"School of Physics and Optoelectronics Technology, Baoji University of Arts and Sciences, Baoji, 721016, China","institution_ids":["https://openalex.org/I2799293361"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109662705","display_name":"Yu Qian","orcid":"https://orcid.org/0000-0002-1926-6218"},"institutions":[{"id":"https://openalex.org/I2799293361","display_name":"Baoji University of Arts and Sciences","ror":"https://ror.org/05nx0xs09","country_code":"CN","type":"education","lineage":["https://openalex.org/I2799293361"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu Qian","raw_affiliation_strings":["School of Physics and Optoelectronics Technology, Baoji University of Arts and Sciences , Baoji 721016, China","School of Physics and Optoelectronics Technology, Baoji University of Arts and Sciences, Baoji, 721016, China"],"affiliations":[{"raw_affiliation_string":"School of Physics and Optoelectronics Technology, Baoji University of Arts and Sciences , Baoji 721016, China","institution_ids":["https://openalex.org/I2799293361"]},{"raw_affiliation_string":"School of Physics and Optoelectronics Technology, Baoji University of Arts and Sciences, Baoji, 721016, China","institution_ids":["https://openalex.org/I2799293361"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091157395","display_name":"Fang\u2010Xiang Wu","orcid":"https://orcid.org/0000-0002-4593-9332"},"institutions":[{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Fang-Xiang Wu","raw_affiliation_strings":["Division of Biomedical Engineering, Department of Computer Science and Department of Mechanical Engineering, University of Saskatchewan , Saskatoon, SK S7N 5A9, Canada"],"affiliations":[{"raw_affiliation_string":"Division of Biomedical Engineering, Department of Computer Science and Department of Mechanical Engineering, University of Saskatchewan , Saskatoon, SK S7N 5A9, Canada","institution_ids":["https://openalex.org/I32625721"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5071217704"],"corresponding_institution_ids":["https://openalex.org/I2799293361","https://openalex.org/I32625721"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.1509,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.60520899,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"39","issue":"12","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chaining","display_name":"Chaining","score":0.7826428413391113},{"id":"https://openalex.org/keywords/nanopore-sequencing","display_name":"Nanopore sequencing","score":0.7554217576980591},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7427769899368286},{"id":"https://openalex.org/keywords/inversion","display_name":"Inversion (geology)","score":0.5074171423912048},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.49345269799232483},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.46445298194885254},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4335605502128601},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3963378369808197},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3495854139328003},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.33513790369033813},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16239038109779358},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1545242965221405},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.07707458734512329}],"concepts":[{"id":"https://openalex.org/C49020025","wikidata":"https://www.wikidata.org/wiki/Q1059099","display_name":"Chaining","level":2,"score":0.7826428413391113},{"id":"https://openalex.org/C126513998","wikidata":"https://www.wikidata.org/wiki/Q8973627","display_name":"Nanopore sequencing","level":4,"score":0.7554217576980591},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7427769899368286},{"id":"https://openalex.org/C1893757","wikidata":"https://www.wikidata.org/wiki/Q3653001","display_name":"Inversion (geology)","level":3,"score":0.5074171423912048},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.49345269799232483},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.46445298194885254},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4335605502128601},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3963378369808197},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3495854139328003},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.33513790369033813},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16239038109779358},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1545242965221405},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.07707458734512329},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0},{"id":"https://openalex.org/C109007969","wikidata":"https://www.wikidata.org/wiki/Q749565","display_name":"Structural basin","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C542102704","wikidata":"https://www.wikidata.org/wiki/Q183257","display_name":"Psychotherapist","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btad726","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad726","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad726/54060577/btad726.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11320709","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11320709","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11320709/pdf/btad726.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad726","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad726","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad726/54060577/btad726.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1304196372","display_name":null,"funder_award_id":"Program","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G2165548363","display_name":null,"funder_award_id":"Canada","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G287772036","display_name":null,"funder_award_id":"202108","funder_id":"https://openalex.org/F4320336567","funder_display_name":"Natural Science Basic Research Program of Shaanxi Province"},{"id":"https://openalex.org/G3406353416","display_name":null,"funder_award_id":"23JK0287","funder_id":"https://openalex.org/F4320325627","funder_display_name":"Education Department of Shaanxi Province"},{"id":"https://openalex.org/G589144820","display_name":null,"funder_award_id":"202108615064","funder_id":"https://openalex.org/F4320322725","funder_display_name":"China Scholarship Council"},{"id":"https://openalex.org/G6552020621","display_name":null,"funder_award_id":"2022JZ-03","funder_id":"https://openalex.org/F4320336567","funder_display_name":"Natural Science Basic Research Program of Shaanxi Province"},{"id":"https://openalex.org/G8273971780","display_name":null,"funder_award_id":"2022GD-TSLD-27","funder_id":"https://openalex.org/F4320336567","funder_display_name":"Natural Science Basic Research Program of Shaanxi Province"},{"id":"https://openalex.org/G8284766523","display_name":null,"funder_award_id":"(NSERC)","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G8342647858","display_name":null,"funder_award_id":"File No.","funder_id":"https://openalex.org/F4320322725","funder_display_name":"China Scholarship Council"},{"id":"https://openalex.org/G8589651859","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320322725","funder_display_name":"China Scholarship Council"}],"funders":[{"id":"https://openalex.org/F4320322725","display_name":"China Scholarship Council","ror":"https://ror.org/04atp4p48"},{"id":"https://openalex.org/F4320325627","display_name":"Education Department of Shaanxi Province","ror":null},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"},{"id":"https://openalex.org/F4320336567","display_name":"Natural Science Basic Research Program of Shaanxi Province","ror":null}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4389453022.pdf"},"referenced_works_count":50,"referenced_works":["https://openalex.org/W80487446","https://openalex.org/W1828154403","https://openalex.org/W1977668719","https://openalex.org/W2075996757","https://openalex.org/W2116126626","https://openalex.org/W2117131162","https://openalex.org/W2137759177","https://openalex.org/W2141978199","https://openalex.org/W2191136822","https://openalex.org/W2194172909","https://openalex.org/W2195724570","https://openalex.org/W2337261418","https://openalex.org/W2521124250","https://openalex.org/W2582800429","https://openalex.org/W2607937729","https://openalex.org/W2622369200","https://openalex.org/W2788876413","https://openalex.org/W2789843538","https://openalex.org/W2804477062","https://openalex.org/W2810425915","https://openalex.org/W2950121474","https://openalex.org/W2951764279","https://openalex.org/W2952067146","https://openalex.org/W2990344913","https://openalex.org/W3042377559","https://openalex.org/W3047578107","https://openalex.org/W3088711112","https://openalex.org/W3092086682","https://openalex.org/W3100672503","https://openalex.org/W3163033414","https://openalex.org/W3175810792","https://openalex.org/W3177485564","https://openalex.org/W4225293672","https://openalex.org/W4229025888","https://openalex.org/W4295896785","https://openalex.org/W4324116459","https://openalex.org/W4367365713","https://openalex.org/W4377832172","https://openalex.org/W4377940775","https://openalex.org/W4379054112","https://openalex.org/W4380355035","https://openalex.org/W4380369847","https://openalex.org/W6603283032","https://openalex.org/W6732674873","https://openalex.org/W6748161336","https://openalex.org/W6770662217","https://openalex.org/W6781127765","https://openalex.org/W6797404123","https://openalex.org/W6810596234","https://openalex.org/W6810997415"],"related_works":["https://openalex.org/W1995270367","https://openalex.org/W4387627836","https://openalex.org/W2767696758","https://openalex.org/W2107793209","https://openalex.org/W2041767423","https://openalex.org/W2378211422","https://openalex.org/W3028301851","https://openalex.org/W2901315987","https://openalex.org/W4200050032","https://openalex.org/W4200061056"],"abstract_inverted_index":{"Abstract":[0],"Motivation":[1],"Longer":[2],"reads":[3],"produced":[4],"by":[5],"PacBio":[6],"or":[7],"Oxford":[8],"Nanopore":[9],"sequencers":[10],"could":[11],"more":[12,44,128,157],"frequently":[13],"span":[14],"the":[15,50,86,99,103,140,164],"breakpoints":[16],"of":[17,149],"structural":[18],"variations":[19],"(SVs)":[20],"than":[21,139,163],"shorter":[22],"reads.":[23],"Therefore,":[24],"existing":[25],"long-read":[26,71],"mapping":[27,72],"methods":[28],"often":[29],"generate":[30],"wrong":[31],"alignments":[32],"and":[33,39,119,134,168],"variant":[34,159],"calls.":[35],"Compared":[36],"to":[37,46,57,106,130],"deletions":[38],"insertions,":[40],"inversion":[41,53],"events":[42],"are":[43,55],"difficult":[45],"be":[47],"detected":[48],"since":[49],"anchors":[51,101],"in":[52,59,102],"regions":[54,133],"nonlinear":[56],"those":[58],"SV-free":[60],"regions.":[61],"To":[62],"address":[63],"this":[64,66],"issue,":[65],"study":[67],"presents":[68],"a":[69,90],"novel":[70],"algorithm":[73],"(named":[74],"as":[75],"invMap).":[76],"Results":[77],"For":[78],"each":[79],"long":[80],"noisy":[81],"read,":[82],"invMap":[83,112,126,153,171],"first":[84],"locates":[85],"aligned":[87,104,132],"region":[88,105],"with":[89],"specifically":[91],"designed":[92],"scoring":[93],"method":[94],"for":[95,137,161],"chaining,":[96],"then":[97],"checks":[98],"remaining":[100],"discover":[107],"potential":[108],"inversions.":[109],"We":[110],"benchmark":[111],"on":[113],"simulated":[114],"datasets":[115],"across":[116],"different":[117],"genomes":[118],"sequencing":[120,147],"coverages,":[121],"experimental":[122],"results":[123],"demonstrate":[124],"that":[125,152],"is":[127,173],"accurate":[129],"locate":[131],"call":[135],"SVs":[136],"inversions":[138,162],"competing":[141,165],"methods.":[142,166],"The":[143,170],"real":[144],"human":[145],"genome":[146],"dataset":[148],"NA12878":[150],"illustrates":[151],"can":[154],"effectively":[155],"find":[156],"candidate":[158],"calls":[160],"Availability":[167],"implementation":[169],"software":[172],"available":[174],"at":[175],"https://github.com/zhang134/invMap.git.":[176]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-04-18T07:56:08.524223","created_date":"2023-12-08T00:00:00"}
