{"id":"https://openalex.org/W4389126617","doi":"https://doi.org/10.1093/bioinformatics/btad724","title":"ProteinMAE: masked autoencoder for protein surface self-supervised learning","display_name":"ProteinMAE: masked autoencoder for protein surface self-supervised learning","publication_year":2023,"publication_date":"2023-11-29","ids":{"openalex":"https://openalex.org/W4389126617","doi":"https://doi.org/10.1093/bioinformatics/btad724","pmid":"https://pubmed.ncbi.nlm.nih.gov/38019955"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad724","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad724","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad724/53933331/btad724.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad724/53933331/btad724.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011879942","display_name":"Mingzhi Yuan","orcid":"https://orcid.org/0000-0003-1322-7530"},"institutions":[{"id":"https://openalex.org/I133868755","display_name":"Shanghai Medical College of Fudan University","ror":"https://ror.org/01zntxs11","country_code":"CN","type":"education","lineage":["https://openalex.org/I133868755","https://openalex.org/I24943067"]},{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Mingzhi Yuan","raw_affiliation_strings":["Digital Medical Research Center, School of Basic Medical Sciences, Fudan University , Shanghai 200032, China","Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University , Shanghai 200032, China","Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University, 131 Dong'an Road, 200032, Shanghai, China","Digital Medical Research Center, School of Basic Medical Sciences, Fudan University, 131 Dong'an Road, 200032, Shanghai, China"],"affiliations":[{"raw_affiliation_string":"Digital Medical Research Center, School of Basic Medical Sciences, Fudan University , Shanghai 200032, China","institution_ids":["https://openalex.org/I133868755"]},{"raw_affiliation_string":"Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University , Shanghai 200032, China","institution_ids":["https://openalex.org/I133868755","https://openalex.org/I24943067"]},{"raw_affiliation_string":"Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University, 131 Dong'an Road, 200032, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Digital Medical Research Center, School of Basic Medical Sciences, Fudan University, 131 Dong'an Road, 200032, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077575204","display_name":"Ao Shen","orcid":"https://orcid.org/0000-0002-2157-4375"},"institutions":[{"id":"https://openalex.org/I133868755","display_name":"Shanghai Medical College of Fudan University","ror":"https://ror.org/01zntxs11","country_code":"CN","type":"education","lineage":["https://openalex.org/I133868755","https://openalex.org/I24943067"]},{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ao Shen","raw_affiliation_strings":["Digital Medical Research Center, School of Basic Medical Sciences, Fudan University , Shanghai 200032, China","Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University , Shanghai 200032, China","Digital Medical Research Center, School of Basic Medical Sciences, Fudan University, 131 Dong'an Road, 200032, Shanghai, China","Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University, 131 Dong'an Road, 200032, Shanghai, China"],"affiliations":[{"raw_affiliation_string":"Digital Medical Research Center, School of Basic Medical Sciences, Fudan University , Shanghai 200032, China","institution_ids":["https://openalex.org/I133868755"]},{"raw_affiliation_string":"Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University , Shanghai 200032, China","institution_ids":["https://openalex.org/I133868755","https://openalex.org/I24943067"]},{"raw_affiliation_string":"Digital Medical Research Center, School of Basic Medical Sciences, Fudan University, 131 Dong'an Road, 200032, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University, 131 Dong'an Road, 200032, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006567056","display_name":"Kexue Fu","orcid":"https://orcid.org/0000-0003-1204-0942"},"institutions":[{"id":"https://openalex.org/I133868755","display_name":"Shanghai Medical College of Fudan University","ror":"https://ror.org/01zntxs11","country_code":"CN","type":"education","lineage":["https://openalex.org/I133868755","https://openalex.org/I24943067"]},{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kexue Fu","raw_affiliation_strings":["Digital Medical Research Center, School of Basic Medical Sciences, Fudan University , Shanghai 200032, China","Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University , Shanghai 200032, China","Digital Medical Research Center, School of Basic Medical Sciences, Fudan University, 131 Dong'an Road, 200032, Shanghai, China","Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University, 131 Dong'an Road, 200032, Shanghai, China"],"affiliations":[{"raw_affiliation_string":"Digital Medical Research Center, School of Basic Medical Sciences, Fudan University , Shanghai 200032, China","institution_ids":["https://openalex.org/I133868755"]},{"raw_affiliation_string":"Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University , Shanghai 200032, China","institution_ids":["https://openalex.org/I133868755","https://openalex.org/I24943067"]},{"raw_affiliation_string":"Digital Medical Research Center, School of Basic Medical Sciences, Fudan University, 131 Dong'an Road, 200032, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University, 131 Dong'an Road, 200032, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033700118","display_name":"Jiaming Guan","orcid":"https://orcid.org/0000-0003-1664-9456"},"institutions":[{"id":"https://openalex.org/I133868755","display_name":"Shanghai Medical College of Fudan University","ror":"https://ror.org/01zntxs11","country_code":"CN","type":"education","lineage":["https://openalex.org/I133868755","https://openalex.org/I24943067"]},{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiaming Guan","raw_affiliation_strings":["Digital Medical Research Center, School of Basic Medical Sciences, Fudan University , Shanghai 200032, China","Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University , Shanghai 200032, China","Digital Medical Research Center, School of Basic Medical Sciences, Fudan University, 131 Dong'an Road, 200032, Shanghai, China","Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University, 131 Dong'an Road, 200032, Shanghai, China"],"affiliations":[{"raw_affiliation_string":"Digital Medical Research Center, School of Basic Medical Sciences, Fudan University , Shanghai 200032, China","institution_ids":["https://openalex.org/I133868755"]},{"raw_affiliation_string":"Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University , Shanghai 200032, China","institution_ids":["https://openalex.org/I133868755","https://openalex.org/I24943067"]},{"raw_affiliation_string":"Digital Medical Research Center, School of Basic Medical Sciences, Fudan University, 131 Dong'an Road, 200032, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University, 131 Dong'an Road, 200032, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056720696","display_name":"Yingfan Ma","orcid":"https://orcid.org/0000-0002-5436-7997"},"institutions":[{"id":"https://openalex.org/I133868755","display_name":"Shanghai Medical College of Fudan University","ror":"https://ror.org/01zntxs11","country_code":"CN","type":"education","lineage":["https://openalex.org/I133868755","https://openalex.org/I24943067"]},{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yingfan Ma","raw_affiliation_strings":["Digital Medical Research Center, School of Basic Medical Sciences, Fudan University , Shanghai 200032, China","Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University , Shanghai 200032, China","Digital Medical Research Center, School of Basic Medical Sciences, Fudan University, 131 Dong'an Road, 200032, Shanghai, China","Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University, 131 Dong'an Road, 200032, Shanghai, China"],"affiliations":[{"raw_affiliation_string":"Digital Medical Research Center, School of Basic Medical Sciences, Fudan University , Shanghai 200032, China","institution_ids":["https://openalex.org/I133868755"]},{"raw_affiliation_string":"Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University , Shanghai 200032, China","institution_ids":["https://openalex.org/I133868755","https://openalex.org/I24943067"]},{"raw_affiliation_string":"Digital Medical Research Center, School of Basic Medical Sciences, Fudan University, 131 Dong'an Road, 200032, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University, 131 Dong'an Road, 200032, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080786678","display_name":"Qin Qiao","orcid":"https://orcid.org/0000-0001-8369-6135"},"institutions":[{"id":"https://openalex.org/I133868755","display_name":"Shanghai Medical College of Fudan University","ror":"https://ror.org/01zntxs11","country_code":"CN","type":"education","lineage":["https://openalex.org/I133868755","https://openalex.org/I24943067"]},{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qin Qiao","raw_affiliation_strings":["Digital Medical Research Center, School of Basic Medical Sciences, Fudan University , Shanghai 200032, China","Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University , Shanghai 200032, China","Digital Medical Research Center, School of Basic Medical Sciences, Fudan University, 131 Dong'an Road, 200032, Shanghai, China","Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University, 131 Dong'an Road, 200032, Shanghai, China"],"affiliations":[{"raw_affiliation_string":"Digital Medical Research Center, School of Basic Medical Sciences, Fudan University , Shanghai 200032, China","institution_ids":["https://openalex.org/I133868755"]},{"raw_affiliation_string":"Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University , Shanghai 200032, China","institution_ids":["https://openalex.org/I133868755","https://openalex.org/I24943067"]},{"raw_affiliation_string":"Digital Medical Research Center, School of Basic Medical Sciences, Fudan University, 131 Dong'an Road, 200032, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University, 131 Dong'an Road, 200032, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5029371371","display_name":"Manning Wang","orcid":"https://orcid.org/0000-0002-9255-3897"},"institutions":[{"id":"https://openalex.org/I133868755","display_name":"Shanghai Medical College of Fudan University","ror":"https://ror.org/01zntxs11","country_code":"CN","type":"education","lineage":["https://openalex.org/I133868755","https://openalex.org/I24943067"]},{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Manning Wang","raw_affiliation_strings":["Digital Medical Research Center, School of Basic Medical Sciences, Fudan University , Shanghai 200032, China","Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University , Shanghai 200032, China","Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University, 131 Dong'an Road, 200032, Shanghai, China","Digital Medical Research Center, School of Basic Medical Sciences, Fudan University, 131 Dong'an Road, 200032, Shanghai, China"],"affiliations":[{"raw_affiliation_string":"Digital Medical Research Center, School of Basic Medical Sciences, Fudan University , Shanghai 200032, China","institution_ids":["https://openalex.org/I133868755"]},{"raw_affiliation_string":"Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University , Shanghai 200032, China","institution_ids":["https://openalex.org/I133868755","https://openalex.org/I24943067"]},{"raw_affiliation_string":"Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University, 131 Dong'an Road, 200032, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Digital Medical Research Center, School of Basic Medical Sciences, Fudan University, 131 Dong'an Road, 200032, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5011879942"],"corresponding_institution_ids":["https://openalex.org/I133868755","https://openalex.org/I24943067"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":2.4362,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.89351233,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"39","issue":"12","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.792348325252533},{"id":"https://openalex.org/keywords/autoencoder","display_name":"Autoencoder","score":0.7391384243965149},{"id":"https://openalex.org/keywords/initialization","display_name":"Initialization","score":0.7269913554191589},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6710751056671143},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5808547735214233},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5021805763244629},{"id":"https://openalex.org/keywords/supervised-learning","display_name":"Supervised learning","score":0.45977768301963806},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4555074870586395},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4317007064819336},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.426941454410553},{"id":"https://openalex.org/keywords/transfer-of-learning","display_name":"Transfer of learning","score":0.41051602363586426},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.35071253776550293}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.792348325252533},{"id":"https://openalex.org/C101738243","wikidata":"https://www.wikidata.org/wiki/Q786435","display_name":"Autoencoder","level":3,"score":0.7391384243965149},{"id":"https://openalex.org/C114466953","wikidata":"https://www.wikidata.org/wiki/Q6034165","display_name":"Initialization","level":2,"score":0.7269913554191589},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6710751056671143},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5808547735214233},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5021805763244629},{"id":"https://openalex.org/C136389625","wikidata":"https://www.wikidata.org/wiki/Q334384","display_name":"Supervised learning","level":3,"score":0.45977768301963806},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4555074870586395},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4317007064819336},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.426941454410553},{"id":"https://openalex.org/C150899416","wikidata":"https://www.wikidata.org/wiki/Q1820378","display_name":"Transfer of learning","level":2,"score":0.41051602363586426},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.35071253776550293},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btad724","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad724","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad724/53933331/btad724.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38019955","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38019955","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10713117","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10713117","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10713117/pdf/btad724.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad724","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad724","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad724/53933331/btad724.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7099999785423279,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G3250757299","display_name":null,"funder_award_id":"23S41900400","funder_id":"https://openalex.org/F4320321885","funder_display_name":"Science and Technology Commission of Shanghai Municipality"},{"id":"https://openalex.org/G7754111381","display_name":null,"funder_award_id":"23S41900400","funder_id":"https://openalex.org/F4320336652","funder_display_name":"Science and Technology Innovation Plan Of Shanghai Science and Technology Commission"}],"funders":[{"id":"https://openalex.org/F4320321885","display_name":"Science and Technology Commission of Shanghai Municipality","ror":"https://ror.org/03kt66j61"},{"id":"https://openalex.org/F4320336652","display_name":"Science and Technology Innovation Plan Of Shanghai Science and Technology Commission","ror":null}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4389126617.pdf"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W1969425147","https://openalex.org/W1975304761","https://openalex.org/W2002044972","https://openalex.org/W2053448121","https://openalex.org/W2105525514","https://openalex.org/W2119114829","https://openalex.org/W2130479394","https://openalex.org/W2141627824","https://openalex.org/W2141853020","https://openalex.org/W2152334724","https://openalex.org/W2155194485","https://openalex.org/W2244686166","https://openalex.org/W2612377862","https://openalex.org/W2731784911","https://openalex.org/W2900437486","https://openalex.org/W2945212882","https://openalex.org/W2992752586","https://openalex.org/W3125756628","https://openalex.org/W3134616030","https://openalex.org/W3170953943","https://openalex.org/W3185341429","https://openalex.org/W4213019189","https://openalex.org/W4213099919","https://openalex.org/W4226085666","https://openalex.org/W4293003482","https://openalex.org/W4367049161","https://openalex.org/W4385245566","https://openalex.org/W6739901393","https://openalex.org/W6762462594","https://openalex.org/W6796788288","https://openalex.org/W6798057236"],"related_works":["https://openalex.org/W2669956259","https://openalex.org/W4249005693","https://openalex.org/W4386121542","https://openalex.org/W4206357785","https://openalex.org/W3192840557","https://openalex.org/W4281381188","https://openalex.org/W2951211570","https://openalex.org/W3167935049","https://openalex.org/W3023427754","https://openalex.org/W4375928479"],"abstract_inverted_index":{"https://github.com/phdymz/ProteinMAE.":[0]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":6}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
