{"id":"https://openalex.org/W4387872798","doi":"https://doi.org/10.1093/bioinformatics/btad648","title":"fastlin: an ultra-fast program for <i>Mycobacterium tuberculosis</i> complex lineage typing","display_name":"fastlin: an ultra-fast program for <i>Mycobacterium tuberculosis</i> complex lineage typing","publication_year":2023,"publication_date":"2023-10-23","ids":{"openalex":"https://openalex.org/W4387872798","doi":"https://doi.org/10.1093/bioinformatics/btad648","pmid":"https://pubmed.ncbi.nlm.nih.gov/37871178"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad648","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad648","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad648/52417556/btad648.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad648/52417556/btad648.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056829881","display_name":"Romain Derelle","orcid":"https://orcid.org/0000-0002-1551-2530"},"institutions":[{"id":"https://openalex.org/I4210109636","display_name":"NIHR Imperial Biomedical Research Centre","ror":"https://ror.org/01kmhx639","country_code":"GB","type":"facility","lineage":["https://openalex.org/I34931013","https://openalex.org/I4210109636"]},{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Romain Derelle","raw_affiliation_strings":["NIHR Health Protection Research Unit in Respiratory Infections, National Heart and Lung Institute, Imperial College London , London W2 1PG, United Kingdom"],"affiliations":[{"raw_affiliation_string":"NIHR Health Protection Research Unit in Respiratory Infections, National Heart and Lung Institute, Imperial College London , London W2 1PG, United Kingdom","institution_ids":["https://openalex.org/I4210109636","https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012148931","display_name":"John A. Lees","orcid":"https://orcid.org/0000-0001-5360-1254"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I4210163563","display_name":"London Centre for Neglected Tropical Disease Research","ror":"https://ror.org/05jx29z89","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210163563"]},{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"John Lees","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus , Hinxton CB10 1SD, United Kingdom","MRC Centre for Global Infectious Disease Analysis, Department of Infectious Disease Epidemiology, Imperial College London , London W12 0BZ, United Kingdom"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus , Hinxton CB10 1SD, United Kingdom","institution_ids":["https://openalex.org/I1303153112"]},{"raw_affiliation_string":"MRC Centre for Global Infectious Disease Analysis, Department of Infectious Disease Epidemiology, Imperial College London , London W12 0BZ, United Kingdom","institution_ids":["https://openalex.org/I4210163563","https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056485188","display_name":"Jody Phelan","orcid":"https://orcid.org/0000-0001-8323-7019"},"institutions":[{"id":"https://openalex.org/I124357947","display_name":"University of London","ror":"https://ror.org/04cw6st05","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947"]},{"id":"https://openalex.org/I4210089966","display_name":"London School of Hygiene & Tropical Medicine","ror":"https://ror.org/00a0jsq62","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I4210089966"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jody Phelan","raw_affiliation_strings":["Department of Pathogen Molecular Biology, London School of Hygiene and Tropical Medicine , London WC1E 7HT, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Department of Pathogen Molecular Biology, London School of Hygiene and Tropical Medicine , London WC1E 7HT, United Kingdom","institution_ids":["https://openalex.org/I124357947","https://openalex.org/I4210089966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064420382","display_name":"Ajit Lalvani","orcid":"https://orcid.org/0000-0002-2396-246X"},"institutions":[{"id":"https://openalex.org/I4210109636","display_name":"NIHR Imperial Biomedical Research Centre","ror":"https://ror.org/01kmhx639","country_code":"GB","type":"facility","lineage":["https://openalex.org/I34931013","https://openalex.org/I4210109636"]},{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ajit Lalvani","raw_affiliation_strings":["NIHR Health Protection Research Unit in Respiratory Infections, National Heart and Lung Institute, Imperial College London , London W2 1PG, United Kingdom"],"affiliations":[{"raw_affiliation_string":"NIHR Health Protection Research Unit in Respiratory Infections, National Heart and Lung Institute, Imperial College London , London W2 1PG, United Kingdom","institution_ids":["https://openalex.org/I4210109636","https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051122737","display_name":"Nimalan Arinaminpathy","orcid":"https://orcid.org/0000-0001-9502-6876"},"institutions":[{"id":"https://openalex.org/I4210109636","display_name":"NIHR Imperial Biomedical Research Centre","ror":"https://ror.org/01kmhx639","country_code":"GB","type":"facility","lineage":["https://openalex.org/I34931013","https://openalex.org/I4210109636"]},{"id":"https://openalex.org/I4210163563","display_name":"London Centre for Neglected Tropical Disease Research","ror":"https://ror.org/05jx29z89","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210163563"]},{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nimalan Arinaminpathy","raw_affiliation_strings":["MRC Centre for Global Infectious Disease Analysis, Department of Infectious Disease Epidemiology, Imperial College London , London W12 0BZ, United Kingdom","NIHR Health Protection Research Unit in Respiratory Infections, National Heart and Lung Institute, Imperial College London , London W2 1PG, United Kingdom"],"affiliations":[{"raw_affiliation_string":"MRC Centre for Global Infectious Disease Analysis, Department of Infectious Disease Epidemiology, Imperial College London , London W12 0BZ, United Kingdom","institution_ids":["https://openalex.org/I4210163563","https://openalex.org/I47508984"]},{"raw_affiliation_string":"NIHR Health Protection Research Unit in Respiratory Infections, National Heart and Lung Institute, Imperial College London , London W2 1PG, United Kingdom","institution_ids":["https://openalex.org/I4210109636","https://openalex.org/I47508984"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5065939739","display_name":"Leonid Chindelevitch","orcid":"https://orcid.org/0000-0002-6619-6013"},"institutions":[{"id":"https://openalex.org/I4210163563","display_name":"London Centre for Neglected Tropical Disease Research","ror":"https://ror.org/05jx29z89","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210163563"]},{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Leonid Chindelevitch","raw_affiliation_strings":["MRC Centre for Global Infectious Disease Analysis, Department of Infectious Disease Epidemiology, Imperial College London , London W12 0BZ, United Kingdom"],"affiliations":[{"raw_affiliation_string":"MRC Centre for Global Infectious Disease Analysis, Department of Infectious Disease Epidemiology, Imperial College London , London W12 0BZ, United Kingdom","institution_ids":["https://openalex.org/I4210163563","https://openalex.org/I47508984"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5056829881"],"corresponding_institution_ids":["https://openalex.org/I4210109636","https://openalex.org/I47508984"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":2.1187,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.87489942,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":98},"biblio":{"volume":"39","issue":"11","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10038","display_name":"Tuberculosis Research and Epidemiology","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10038","display_name":"Tuberculosis Research and Epidemiology","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11316","display_name":"Mycobacterium research and diagnosis","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.991100013256073,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mycobacterium-tuberculosis-complex","display_name":"Mycobacterium tuberculosis complex","score":0.8843115568161011},{"id":"https://openalex.org/keywords/typing","display_name":"Typing","score":0.8437231779098511},{"id":"https://openalex.org/keywords/barcode","display_name":"Barcode","score":0.741710364818573},{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.6742461323738098},{"id":"https://openalex.org/keywords/lineage","display_name":"Lineage (genetic)","score":0.670408308506012},{"id":"https://openalex.org/keywords/mycobacterium-tuberculosis","display_name":"Mycobacterium tuberculosis","score":0.6245310306549072},{"id":"https://openalex.org/keywords/tuberculosis","display_name":"Tuberculosis","score":0.48916128277778625},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.48645922541618347},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.44345566630363464},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.436586856842041},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3646965026855469},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.11336085200309753},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11213257908821106},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.07684540748596191}],"concepts":[{"id":"https://openalex.org/C2779790121","wikidata":"https://www.wikidata.org/wiki/Q5779917","display_name":"Mycobacterium tuberculosis complex","level":4,"score":0.8843115568161011},{"id":"https://openalex.org/C2781209916","wikidata":"https://www.wikidata.org/wiki/Q3215756","display_name":"Typing","level":2,"score":0.8437231779098511},{"id":"https://openalex.org/C2776841711","wikidata":"https://www.wikidata.org/wiki/Q856","display_name":"Barcode","level":2,"score":0.741710364818573},{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.6742461323738098},{"id":"https://openalex.org/C2776817793","wikidata":"https://www.wikidata.org/wiki/Q6553369","display_name":"Lineage (genetic)","level":3,"score":0.670408308506012},{"id":"https://openalex.org/C2777975735","wikidata":"https://www.wikidata.org/wiki/Q130971","display_name":"Mycobacterium tuberculosis","level":3,"score":0.6245310306549072},{"id":"https://openalex.org/C2781069245","wikidata":"https://www.wikidata.org/wiki/Q12204","display_name":"Tuberculosis","level":2,"score":0.48916128277778625},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.48645922541618347},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.44345566630363464},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.436586856842041},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3646965026855469},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.11336085200309753},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11213257908821106},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.07684540748596191},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btad648","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad648","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad648/52417556/btad648.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37871178","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37871178","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:researchonline.lshtm.ac.uk:4680195","is_oa":false,"landing_page_url":"https://orcid.org/0000-0002-1551-2530>;","pdf_url":null,"source":{"id":"https://openalex.org/S4306402527","display_name":"LSHTM Research Online (London School of Hygiene and Tropical Medicine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210089966","host_organization_name":"London School of Hygiene & Tropical Medicine","host_organization_lineage":["https://openalex.org/I4210089966"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"PeerReviewed"},{"id":"pmh:oai:pubmedcentral.nih.gov:10627351","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10627351","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10627351/pdf/btad648.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:spiral.imperial.ac.uk:10044/1/107472","is_oa":true,"landing_page_url":"http://hdl.handle.net/10044/1/107472","pdf_url":null,"source":{"id":"https://openalex.org/S4306401396","display_name":"Spiral (Imperial College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I47508984","host_organization_name":"Imperial College London","host_organization_lineage":["https://openalex.org/I47508984"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad648","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad648","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad648/52417556/btad648.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.8199999928474426,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G1677950109","display_name":null,"funder_award_id":"NIHR200927","funder_id":"https://openalex.org/F4320319990","funder_display_name":"National Institute for Health and Care Research"},{"id":"https://openalex.org/G2357938096","display_name":null,"funder_award_id":"NIHR200927","funder_id":"https://openalex.org/F4320318095","funder_display_name":"National Institute for Health Research Health Protection Research Unit"},{"id":"https://openalex.org/G2366428187","display_name":null,"funder_award_id":"MR/R015600/1","funder_id":"https://openalex.org/F4320319990","funder_display_name":"National Institute for Health and Care Research"},{"id":"https://openalex.org/G2740751069","display_name":"MRC Centre for Global Infectious Disease Analysis","funder_award_id":"MR/R015600/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G2746181667","display_name":null,"funder_award_id":"MRC/FCDO Concordat agreement","funder_id":"https://openalex.org/F4320330760","funder_display_name":"Foreign, Commonwealth and Development Office"},{"id":"https://openalex.org/G3686073670","display_name":null,"funder_award_id":"200927","funder_id":"https://openalex.org/F4320319990","funder_display_name":"National Institute for Health and Care Research"},{"id":"https://openalex.org/G3854137172","display_name":null,"funder_award_id":"Security","funder_id":"https://openalex.org/F4320330760","funder_display_name":"Foreign, Commonwealth and Development Office"},{"id":"https://openalex.org/G393184570","display_name":null,"funder_award_id":"MR/R015600/1","funder_id":"https://openalex.org/F4320330760","funder_display_name":"Foreign, Commonwealth and Development Office"},{"id":"https://openalex.org/G4388622794","display_name":null,"funder_award_id":"200927","funder_id":"https://openalex.org/F4320318095","funder_display_name":"National Institute for Health Research Health Protection Research Unit"},{"id":"https://openalex.org/G6406438334","display_name":null,"funder_award_id":"MRC/FCDO Concordat agreement","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G6520098237","display_name":null,"funder_award_id":"MR/R015600/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G7560532233","display_name":null,"funder_award_id":"MR/X020258/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"}],"funders":[{"id":"https://openalex.org/F4320318095","display_name":"National Institute for Health Research Health Protection Research Unit","ror":null},{"id":"https://openalex.org/F4320319990","display_name":"National Institute for Health and Care Research","ror":"https://ror.org/0187kwz08"},{"id":"https://openalex.org/F4320319994","display_name":"Department of Health and Social Care","ror":"https://ror.org/03sbpja79"},{"id":"https://openalex.org/F4320330760","display_name":"Foreign, Commonwealth and Development Office","ror":null},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4387872798.pdf"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W2012473911","https://openalex.org/W2014357260","https://openalex.org/W2139570040","https://openalex.org/W2951851640","https://openalex.org/W2952463453","https://openalex.org/W2970043508","https://openalex.org/W2981591337","https://openalex.org/W3005424591","https://openalex.org/W3111672821","https://openalex.org/W3128457606","https://openalex.org/W3175871955","https://openalex.org/W4210524473","https://openalex.org/W4281634747","https://openalex.org/W4380576612","https://openalex.org/W6790480806","https://openalex.org/W6797614325"],"related_works":["https://openalex.org/W4238897586","https://openalex.org/W2256570403","https://openalex.org/W2074156223","https://openalex.org/W2103246366","https://openalex.org/W435179959","https://openalex.org/W2901653204","https://openalex.org/W2619091065","https://openalex.org/W2102526470","https://openalex.org/W4378447789","https://openalex.org/W2112091811"],"abstract_inverted_index":{"fastlin":[0],"is":[1],"freely":[2],"available":[3],"at":[4],"https://github.com/rderelle/fastlin":[5],"and":[6],"can":[7],"easily":[8],"be":[9],"installed":[10],"using":[11],"Conda.":[12]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":6}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2023-10-24T00:00:00"}
