{"id":"https://openalex.org/W4380871953","doi":"https://doi.org/10.1093/bioinformatics/btad385","title":"MolClustPy: a Python package to characterize multivalent biomolecular clusters","display_name":"MolClustPy: a Python package to characterize multivalent biomolecular clusters","publication_year":2023,"publication_date":"2023-06-01","ids":{"openalex":"https://openalex.org/W4380871953","doi":"https://doi.org/10.1093/bioinformatics/btad385","pmid":"https://pubmed.ncbi.nlm.nih.gov/37326981"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad385","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad385","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad385/50628606/btad385.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad385/50628606/btad385.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069184845","display_name":"Aniruddha Chattaraj","orcid":"https://orcid.org/0000-0002-7105-6621"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Aniruddha Chattaraj","raw_affiliation_strings":["R. D. Berlin Center for Cell Analysis and Modeling, University of Connecticut School of Medicine , Farmington, CT 06030, United States"],"affiliations":[{"raw_affiliation_string":"R. D. Berlin Center for Cell Analysis and Modeling, University of Connecticut School of Medicine , Farmington, CT 06030, United States","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026145428","display_name":"Indivar Nalagandla","orcid":null},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Indivar Nalagandla","raw_affiliation_strings":["R. D. Berlin Center for Cell Analysis and Modeling, University of Connecticut School of Medicine , Farmington, CT 06030, United States"],"affiliations":[{"raw_affiliation_string":"R. D. Berlin Center for Cell Analysis and Modeling, University of Connecticut School of Medicine , Farmington, CT 06030, United States","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019048997","display_name":"Leslie M. Loew","orcid":"https://orcid.org/0000-0002-1851-4646"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Leslie M Loew","raw_affiliation_strings":["R. D. Berlin Center for Cell Analysis and Modeling, University of Connecticut School of Medicine , Farmington, CT 06030, United States"],"affiliations":[{"raw_affiliation_string":"R. D. Berlin Center for Cell Analysis and Modeling, University of Connecticut School of Medicine , Farmington, CT 06030, United States","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5107139754","display_name":"Michael L. Blinov","orcid":"https://orcid.org/0000-0002-9363-9705"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael L Blinov","raw_affiliation_strings":["R. D. Berlin Center for Cell Analysis and Modeling, University of Connecticut School of Medicine , Farmington, CT 06030, United States"],"affiliations":[{"raw_affiliation_string":"R. D. Berlin Center for Cell Analysis and Modeling, University of Connecticut School of Medicine , Farmington, CT 06030, United States","institution_ids":["https://openalex.org/I140172145"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5069184845"],"corresponding_institution_ids":["https://openalex.org/I140172145"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.1523,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.58020769,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"39","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.956749439239502},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7609454989433289},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6182027459144592},{"id":"https://openalex.org/keywords/software-package","display_name":"Software package","score":0.6085847616195679},{"id":"https://openalex.org/keywords/cluster","display_name":"Cluster (spacecraft)","score":0.5579268932342529},{"id":"https://openalex.org/keywords/stochastic-simulation","display_name":"Stochastic simulation","score":0.5036668181419373},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.5013301372528076},{"id":"https://openalex.org/keywords/range","display_name":"Range (aeronautics)","score":0.42969435453414917},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.4252711832523346},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.41327109932899475},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.41236838698387146},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3630128800868988},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3353370428085327},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3124302327632904},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.20834499597549438},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1386643946170807},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.10315078496932983},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.08821409940719604},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.08377701044082642}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.956749439239502},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7609454989433289},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6182027459144592},{"id":"https://openalex.org/C3020440742","wikidata":"https://www.wikidata.org/wiki/Q1176855","display_name":"Software package","level":3,"score":0.6085847616195679},{"id":"https://openalex.org/C164866538","wikidata":"https://www.wikidata.org/wiki/Q367351","display_name":"Cluster (spacecraft)","level":2,"score":0.5579268932342529},{"id":"https://openalex.org/C25915931","wikidata":"https://www.wikidata.org/wiki/Q4180825","display_name":"Stochastic simulation","level":2,"score":0.5036668181419373},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.5013301372528076},{"id":"https://openalex.org/C204323151","wikidata":"https://www.wikidata.org/wiki/Q905424","display_name":"Range (aeronautics)","level":2,"score":0.42969435453414917},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.4252711832523346},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.41327109932899475},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.41236838698387146},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3630128800868988},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3353370428085327},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3124302327632904},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.20834499597549438},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1386643946170807},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.10315078496932983},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.08821409940719604},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.08377701044082642},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btad385","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad385","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad385/50628606/btad385.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37326981","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37326981","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10290549","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10290549","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10290549/pdf/btad385.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad385","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad385","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad385/50628606/btad385.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1263088912","display_name":null,"funder_award_id":"R24 GM137787","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G1872987312","display_name":null,"funder_award_id":"R01 GM132859","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5694878234","display_name":null,"funder_award_id":"GM137787","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4380871953.pdf"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W1966886240","https://openalex.org/W2085978470","https://openalex.org/W2107410908","https://openalex.org/W2121490181","https://openalex.org/W2159629828","https://openalex.org/W2163493106","https://openalex.org/W2172098255","https://openalex.org/W2175715045","https://openalex.org/W2271421556","https://openalex.org/W2303100661","https://openalex.org/W2335345046","https://openalex.org/W2590253057","https://openalex.org/W2590568317","https://openalex.org/W2909992333","https://openalex.org/W2922246560","https://openalex.org/W2951031981","https://openalex.org/W2969279439","https://openalex.org/W3003547858","https://openalex.org/W3091506997","https://openalex.org/W3099323319","https://openalex.org/W3182231624","https://openalex.org/W3191096373"],"related_works":["https://openalex.org/W2789551765","https://openalex.org/W2059670546","https://openalex.org/W4220668561","https://openalex.org/W2995057966","https://openalex.org/W4380871953","https://openalex.org/W2010064959","https://openalex.org/W2566205467","https://openalex.org/W3012616639","https://openalex.org/W3126000805","https://openalex.org/W2119742499"],"abstract_inverted_index":{"The":[0],"software":[1],"is":[2,10],"implemented":[3],"in":[4],"Python.":[5],"A":[6],"detailed":[7],"Jupyter":[8],"notebook":[9],"provided":[11],"to":[12],"enable":[13],"convenient":[14],"running.":[15],"Code,":[16],"user":[17],"guide,":[18],"and":[19],"examples":[20],"are":[21],"freely":[22],"available":[23],"at":[24],"https://molclustpy.github.io/.":[25]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
