{"id":"https://openalex.org/W4378953498","doi":"https://doi.org/10.1093/bioinformatics/btad351","title":"A complete graph-based approach with multi-task learning for predicting synergistic drug combinations","display_name":"A complete graph-based approach with multi-task learning for predicting synergistic drug combinations","publication_year":2023,"publication_date":"2023-06-01","ids":{"openalex":"https://openalex.org/W4378953498","doi":"https://doi.org/10.1093/bioinformatics/btad351","pmid":"https://pubmed.ncbi.nlm.nih.gov/37261842"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad351","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad351","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad351/50502982/btad351.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad351/50502982/btad351.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100454350","display_name":"Xiaowen Wang","orcid":"https://orcid.org/0000-0003-1880-7921"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaowen Wang","raw_affiliation_strings":["School of Software Engineering, Tongji University , Shanghai 201804, China"],"affiliations":[{"raw_affiliation_string":"School of Software Engineering, Tongji University , Shanghai 201804, China","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030414508","display_name":"Hongming Zhu","orcid":"https://orcid.org/0000-0001-5795-5279"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongming Zhu","raw_affiliation_strings":["School of Software Engineering, Tongji University , Shanghai 201804, China"],"affiliations":[{"raw_affiliation_string":"School of Software Engineering, Tongji University , Shanghai 201804, China","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104203784","display_name":"Danyi Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Danyi Chen","raw_affiliation_strings":["School of Software Engineering, Tongji University , Shanghai 201804, China"],"affiliations":[{"raw_affiliation_string":"School of Software Engineering, Tongji University , Shanghai 201804, China","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101067779","display_name":"Yongsheng Yu","orcid":"https://orcid.org/0000-0001-7929-3552"},"institutions":[{"id":"https://openalex.org/I4210127436","display_name":"Tasly Holding Group (China)","ror":"https://ror.org/034kb7s93","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210127436"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yongsheng Yu","raw_affiliation_strings":["Drug Discovery and Development Department, Tasly Biopharmaceuticals Co., Ltd , Shanghai 201203, China"],"affiliations":[{"raw_affiliation_string":"Drug Discovery and Development Department, Tasly Biopharmaceuticals Co., Ltd , Shanghai 201203, China","institution_ids":["https://openalex.org/I4210127436"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092062425","display_name":"Qi Liu","orcid":null},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]},{"id":"https://openalex.org/I4210128175","display_name":"Shanghai East Hospital","ror":"https://ror.org/038xmzj21","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210128175"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Qi Liu","raw_affiliation_strings":["School of Software Engineering, Tongji University , Shanghai 201804, China","Translational Medical Center for Stem Cell Therapy and Institute for Regenerative Medicine, Shanghai East Hospital, Bioinformatics Department, School of Life Sciences and Technology, Tongji University , Shanghai 200092, China","Bioinformatics Department, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China"],"affiliations":[{"raw_affiliation_string":"School of Software Engineering, Tongji University , Shanghai 201804, China","institution_ids":["https://openalex.org/I116953780"]},{"raw_affiliation_string":"Translational Medical Center for Stem Cell Therapy and Institute for Regenerative Medicine, Shanghai East Hospital, Bioinformatics Department, School of Life Sciences and Technology, Tongji University , Shanghai 200092, China","institution_ids":["https://openalex.org/I4210128175"]},{"raw_affiliation_string":"Bioinformatics Department, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026465152","display_name":"Qin Liu","orcid":"https://orcid.org/0000-0002-9352-1694"},"institutions":[{"id":"https://openalex.org/I4210128175","display_name":"Shanghai East Hospital","ror":"https://ror.org/038xmzj21","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210128175"]},{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Qin Liu","raw_affiliation_strings":["School of Software Engineering, Tongji University , Shanghai 201804, China","Translational Medical Center for Stem Cell Therapy and Institute for Regenerative Medicine, Shanghai East Hospital, Bioinformatics Department, School of Life Sciences and Technology, Tongji University , Shanghai 200092, China"],"affiliations":[{"raw_affiliation_string":"School of Software Engineering, Tongji University , Shanghai 201804, China","institution_ids":["https://openalex.org/I116953780"]},{"raw_affiliation_string":"Translational Medical Center for Stem Cell Therapy and Institute for Regenerative Medicine, Shanghai East Hospital, Bioinformatics Department, School of Life Sciences and Technology, Tongji University , Shanghai 200092, China","institution_ids":["https://openalex.org/I4210128175"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5026465152","https://openalex.org/A5092062425"],"corresponding_institution_ids":["https://openalex.org/I116953780","https://openalex.org/I4210128175"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":5.2685,"has_fulltext":true,"cited_by_count":26,"citation_normalized_percentile":{"value":0.96395407,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"39","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9909999966621399,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11440","display_name":"Click Chemistry and Applications","score":0.9869999885559082,"subfield":{"id":"https://openalex.org/subfields/1605","display_name":"Organic Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6982464790344238},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.6555640697479248},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.6354453563690186},{"id":"https://openalex.org/keywords/generalization","display_name":"Generalization","score":0.6266390681266785},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.563532292842865},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.5071532726287842},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.48889222741127014},{"id":"https://openalex.org/keywords/graph-embedding","display_name":"Graph embedding","score":0.4219076633453369},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.31192484498023987},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.13986852765083313}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6982464790344238},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.6555640697479248},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.6354453563690186},{"id":"https://openalex.org/C177148314","wikidata":"https://www.wikidata.org/wiki/Q170084","display_name":"Generalization","level":2,"score":0.6266390681266785},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.563532292842865},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.5071532726287842},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.48889222741127014},{"id":"https://openalex.org/C75564084","wikidata":"https://www.wikidata.org/wiki/Q5597085","display_name":"Graph embedding","level":3,"score":0.4219076633453369},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.31192484498023987},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.13986852765083313},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004338","descriptor_name":"Drug Combinations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004338","descriptor_name":"Drug Combinations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004338","descriptor_name":"Drug Combinations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004353","descriptor_name":"Drug Evaluation, Preclinical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004353","descriptor_name":"Drug Evaluation, Preclinical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004353","descriptor_name":"Drug Evaluation, Preclinical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010406","descriptor_name":"Penicillins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010406","descriptor_name":"Penicillins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010406","descriptor_name":"Penicillins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btad351","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad351","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad351/50502982/btad351.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37261842","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37261842","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10256571","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10256571","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10256571/pdf/btad351.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad351","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad351","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad351/50502982/btad351.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5299999713897705,"id":"https://metadata.un.org/sdg/16","display_name":"Peace, Justice and strong institutions"},{"score":0.4099999964237213,"id":"https://metadata.un.org/sdg/10","display_name":"Reduced inequalities"}],"awards":[{"id":"https://openalex.org/G5797066792","display_name":null,"funder_award_id":"2021YFF1200900","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G611205877","display_name":null,"funder_award_id":"2021YFF1201200","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"}],"funders":[{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4378953498.pdf"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W2031441006","https://openalex.org/W2043398720","https://openalex.org/W2145877930","https://openalex.org/W2187089797","https://openalex.org/W2299417213","https://openalex.org/W2335854816","https://openalex.org/W2600452401","https://openalex.org/W2606793011","https://openalex.org/W2608863179","https://openalex.org/W2775061087","https://openalex.org/W2809953005","https://openalex.org/W2893209354","https://openalex.org/W2950860419","https://openalex.org/W2960677646","https://openalex.org/W3006386963","https://openalex.org/W3086347240","https://openalex.org/W3092034553","https://openalex.org/W3102269903","https://openalex.org/W3127930610","https://openalex.org/W3129065280","https://openalex.org/W3141797743","https://openalex.org/W3172530361","https://openalex.org/W3178697201","https://openalex.org/W4206377455","https://openalex.org/W4206405364","https://openalex.org/W4206718607","https://openalex.org/W4293877477","https://openalex.org/W4385245566","https://openalex.org/W6703221619","https://openalex.org/W6739901393","https://openalex.org/W6798971917","https://openalex.org/W6806757154"],"related_works":["https://openalex.org/W3036264823","https://openalex.org/W3206528106","https://openalex.org/W2123605750","https://openalex.org/W2912814903","https://openalex.org/W2088740331","https://openalex.org/W2950907416","https://openalex.org/W3038102983","https://openalex.org/W2082479932","https://openalex.org/W4281484020","https://openalex.org/W2932872266"],"abstract_inverted_index":{"The":[0],"code":[1],"of":[2],"CGMS":[3],"is":[4],"available":[5],"via":[6],"https://github.com/TOJSSE-iData/CGMS.":[7]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":3}],"updated_date":"2026-03-11T14:59:36.786465","created_date":"2025-10-10T00:00:00"}
