{"id":"https://openalex.org/W4378348321","doi":"https://doi.org/10.1093/bioinformatics/btad345","title":"Online bias-aware disease module mining with ROBUST-Web","display_name":"Online bias-aware disease module mining with ROBUST-Web","publication_year":2023,"publication_date":"2023-05-25","ids":{"openalex":"https://openalex.org/W4378348321","doi":"https://doi.org/10.1093/bioinformatics/btad345","pmid":"https://pubmed.ncbi.nlm.nih.gov/37233198"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad345","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad345","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad345/50457175/btad345.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad345/50457175/btad345.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087124641","display_name":"Suryadipto Sarkar","orcid":"https://orcid.org/0000-0001-9131-0407"},"institutions":[{"id":"https://openalex.org/I181369854","display_name":"Friedrich-Alexander-Universit\u00e4t Erlangen-N\u00fcrnberg","ror":"https://ror.org/00f7hpc57","country_code":"DE","type":"education","lineage":["https://openalex.org/I181369854"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Suryadipto Sarkar","raw_affiliation_strings":["Biomedical Network Science Lab, Department of Artificial Intelligence in Biomedical Engineering, Friedrich-Alexander-Universit\u00e4t Erlangen-N\u00fcrnberg , Erlangen 91301, Germany"],"affiliations":[{"raw_affiliation_string":"Biomedical Network Science Lab, Department of Artificial Intelligence in Biomedical Engineering, Friedrich-Alexander-Universit\u00e4t Erlangen-N\u00fcrnberg , Erlangen 91301, Germany","institution_ids":["https://openalex.org/I181369854"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055363305","display_name":"Marta Lucchetta","orcid":"https://orcid.org/0000-0002-2641-4792"},"institutions":[{"id":"https://openalex.org/I6141010","display_name":"European Institute of Oncology","ror":"https://ror.org/02vr0ne26","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210153126","https://openalex.org/I6141010"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marta Lucchetta","raw_affiliation_strings":["Department of Experimental Oncology, IEO European Institute of Oncology IRCCS , Milan 20139, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Experimental Oncology, IEO European Institute of Oncology IRCCS , Milan 20139, Italy","institution_ids":["https://openalex.org/I6141010"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085359993","display_name":"Andreas Maier","orcid":"https://orcid.org/0000-0003-4408-0068"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andreas Maier","raw_affiliation_strings":["Institute for Computational Systems Biology, University of Hamburg , Hamburg 22607, Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Computational Systems Biology, University of Hamburg , Hamburg 22607, Germany","institution_ids":["https://openalex.org/I159176309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040856558","display_name":"Mohamed M Abdrabbou","orcid":"https://orcid.org/0000-0003-2778-7483"},"institutions":[{"id":"https://openalex.org/I181369854","display_name":"Friedrich-Alexander-Universit\u00e4t Erlangen-N\u00fcrnberg","ror":"https://ror.org/00f7hpc57","country_code":"DE","type":"education","lineage":["https://openalex.org/I181369854"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Mohamed M Abdrabbou","raw_affiliation_strings":["Biomedical Network Science Lab, Department of Artificial Intelligence in Biomedical Engineering, Friedrich-Alexander-Universit\u00e4t Erlangen-N\u00fcrnberg , Erlangen 91301, Germany"],"affiliations":[{"raw_affiliation_string":"Biomedical Network Science Lab, Department of Artificial Intelligence in Biomedical Engineering, Friedrich-Alexander-Universit\u00e4t Erlangen-N\u00fcrnberg , Erlangen 91301, Germany","institution_ids":["https://openalex.org/I181369854"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073222532","display_name":"Jan Baumbach","orcid":"https://orcid.org/0000-0002-0282-0462"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jan Baumbach","raw_affiliation_strings":["Institute for Computational Systems Biology, University of Hamburg , Hamburg 22607, Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Computational Systems Biology, University of Hamburg , Hamburg 22607, Germany","institution_ids":["https://openalex.org/I159176309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035928806","display_name":"Markus List","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Markus List","raw_affiliation_strings":["Chair of Experimental Bioinformatics, TUM School of Life Sciences, Technical University of Munich , Freising 85354, Germany"],"affiliations":[{"raw_affiliation_string":"Chair of Experimental Bioinformatics, TUM School of Life Sciences, Technical University of Munich , Freising 85354, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032142988","display_name":"Martin H. Schaefer","orcid":"https://orcid.org/0000-0001-7503-6364"},"institutions":[{"id":"https://openalex.org/I6141010","display_name":"European Institute of Oncology","ror":"https://ror.org/02vr0ne26","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210153126","https://openalex.org/I6141010"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Martin H Schaefer","raw_affiliation_strings":["Department of Experimental Oncology, IEO European Institute of Oncology IRCCS , Milan 20139, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Experimental Oncology, IEO European Institute of Oncology IRCCS , Milan 20139, Italy","institution_ids":["https://openalex.org/I6141010"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087738237","display_name":"David B. Blumenthal","orcid":"https://orcid.org/0000-0001-8651-750X"},"institutions":[{"id":"https://openalex.org/I181369854","display_name":"Friedrich-Alexander-Universit\u00e4t Erlangen-N\u00fcrnberg","ror":"https://ror.org/00f7hpc57","country_code":"DE","type":"education","lineage":["https://openalex.org/I181369854"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"David B Blumenthal","raw_affiliation_strings":["Biomedical Network Science Lab, Department of Artificial Intelligence in Biomedical Engineering, Friedrich-Alexander-Universit\u00e4t Erlangen-N\u00fcrnberg , Erlangen 91301, Germany"],"affiliations":[{"raw_affiliation_string":"Biomedical Network Science Lab, Department of Artificial Intelligence in Biomedical Engineering, Friedrich-Alexander-Universit\u00e4t Erlangen-N\u00fcrnberg , Erlangen 91301, Germany","institution_ids":["https://openalex.org/I181369854"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5087738237"],"corresponding_institution_ids":["https://openalex.org/I181369854"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.9049,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.7469904,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"39","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9882000088691711,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8121743202209473},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.7910493612289429},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.7398779988288879},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5977470874786377},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.5693478584289551},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5366859436035156},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.528985857963562},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.518990695476532},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.4880427420139313},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.45438987016677856},{"id":"https://openalex.org/keywords/web-modeling","display_name":"Web modeling","score":0.4157021939754486},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.31298118829727173},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.25766003131866455},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.16545304656028748},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08212524652481079}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8121743202209473},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.7910493612289429},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.7398779988288879},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5977470874786377},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.5693478584289551},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5366859436035156},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.528985857963562},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.518990695476532},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.4880427420139313},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.45438987016677856},{"id":"https://openalex.org/C130436687","wikidata":"https://www.wikidata.org/wiki/Q7978591","display_name":"Web modeling","level":3,"score":0.4157021939754486},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.31298118829727173},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.25766003131866455},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.16545304656028748},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08212524652481079},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btad345","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad345","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad345/50457175/btad345.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37233198","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37233198","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10246579","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10246579","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10246579/pdf/btad345.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad345","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad345","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad345/50457175/btad345.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1690928957","display_name":null,"funder_award_id":"777111","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4956428346","display_name":null,"funder_award_id":"Horizon 2020 research and innovatio","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5036817778","display_name":null,"funder_award_id":"European Union's Horizon 2020 research and innov","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G7842005466","display_name":null,"funder_award_id":"Horizon 2020","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8318064016","display_name":null,"funder_award_id":"Horizon","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8633428685","display_name":null,"funder_award_id":"European Union's Horizon 2020 research and innovat","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4378348321.pdf"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W1559830894","https://openalex.org/W1871096589","https://openalex.org/W2018838463","https://openalex.org/W2043764521","https://openalex.org/W2110256992","https://openalex.org/W2110553827","https://openalex.org/W2122863289","https://openalex.org/W2125910575","https://openalex.org/W2159675211","https://openalex.org/W2263739890","https://openalex.org/W2345657688","https://openalex.org/W2767891136","https://openalex.org/W2899942534","https://openalex.org/W2900569176","https://openalex.org/W2901527454","https://openalex.org/W2913996609","https://openalex.org/W2917858269","https://openalex.org/W2944545583","https://openalex.org/W2983166786","https://openalex.org/W3095380161","https://openalex.org/W3117096276","https://openalex.org/W3121786075","https://openalex.org/W3141934318","https://openalex.org/W3217284213","https://openalex.org/W4205381020","https://openalex.org/W4210298924","https://openalex.org/W4210567477","https://openalex.org/W4283581736"],"related_works":["https://openalex.org/W2789551765","https://openalex.org/W1492751213","https://openalex.org/W3136060338","https://openalex.org/W2064213895","https://openalex.org/W3139770152","https://openalex.org/W2149623444","https://openalex.org/W2349200978","https://openalex.org/W1501569591","https://openalex.org/W2150333190","https://openalex.org/W187706589"],"abstract_inverted_index":{"Web":[0],"application:":[1],"https://robust-web.net.":[2],"Source":[3],"code":[4],"of":[5],"web":[6],"application":[7],"and":[8],"Python":[9],"package":[10],"with":[11],"new":[12],"bias-aware":[13],"edge":[14],"costs:":[15],"https://github.com/bionetslab/robust-web,":[16],"https://github.com/bionetslab/robust_bias_aware.":[17]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1}],"updated_date":"2026-04-19T08:26:33.389920","created_date":"2025-10-10T00:00:00"}
