{"id":"https://openalex.org/W4378549094","doi":"https://doi.org/10.1093/bioinformatics/btad325","title":"IndepthPathway: an integrated tool for in-depth pathway enrichment analysis based on single-cell sequencing data","display_name":"IndepthPathway: an integrated tool for in-depth pathway enrichment analysis based on single-cell sequencing data","publication_year":2023,"publication_date":"2023-05-27","ids":{"openalex":"https://openalex.org/W4378549094","doi":"https://doi.org/10.1093/bioinformatics/btad325","pmid":"https://pubmed.ncbi.nlm.nih.gov/37243667"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad325","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad325","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad325/50463778/btad325.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad325/50463778/btad325.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100320176","display_name":"Sanghoon Lee","orcid":"https://orcid.org/0000-0001-8473-1764"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]},{"id":"https://openalex.org/I4210128526","display_name":"UPMC Hillman Cancer Center","ror":"https://ror.org/03bw34a45","country_code":"US","type":"facility","lineage":["https://openalex.org/I170201317","https://openalex.org/I4210128526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sanghoon Lee","raw_affiliation_strings":["Department of Biomedical Informatics, University of Pittsburgh , Pittsburgh, PA 15206, United States","Department of Pathology, University of Pittsburgh , Pittsburgh, PA 15232, United States","UPMC Hillman Cancer Center, University of Pittsburgh , Pittsburgh, PA 15232, United States"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, University of Pittsburgh , Pittsburgh, PA 15206, United States","institution_ids":["https://openalex.org/I170201317"]},{"raw_affiliation_string":"Department of Pathology, University of Pittsburgh , Pittsburgh, PA 15232, United States","institution_ids":["https://openalex.org/I170201317"]},{"raw_affiliation_string":"UPMC Hillman Cancer Center, University of Pittsburgh , Pittsburgh, PA 15232, United States","institution_ids":["https://openalex.org/I4210128526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077858051","display_name":"Letian Deng","orcid":null},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]},{"id":"https://openalex.org/I4210128526","display_name":"UPMC Hillman Cancer Center","ror":"https://ror.org/03bw34a45","country_code":"US","type":"facility","lineage":["https://openalex.org/I170201317","https://openalex.org/I4210128526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Letian Deng","raw_affiliation_strings":["Department of Pathology, University of Pittsburgh , Pittsburgh, PA 15232, United States","UPMC Hillman Cancer Center, University of Pittsburgh , Pittsburgh, PA 15232, United States"],"affiliations":[{"raw_affiliation_string":"Department of Pathology, University of Pittsburgh , Pittsburgh, PA 15232, United States","institution_ids":["https://openalex.org/I170201317"]},{"raw_affiliation_string":"UPMC Hillman Cancer Center, University of Pittsburgh , Pittsburgh, PA 15232, United States","institution_ids":["https://openalex.org/I4210128526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100372002","display_name":"Yue Wang","orcid":"https://orcid.org/0000-0002-1788-1102"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]},{"id":"https://openalex.org/I4210128526","display_name":"UPMC Hillman Cancer Center","ror":"https://ror.org/03bw34a45","country_code":"US","type":"facility","lineage":["https://openalex.org/I170201317","https://openalex.org/I4210128526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yue Wang","raw_affiliation_strings":["Department of Pathology, University of Pittsburgh , Pittsburgh, PA 15232, United States","UPMC Hillman Cancer Center, University of Pittsburgh , Pittsburgh, PA 15232, United States"],"affiliations":[{"raw_affiliation_string":"Department of Pathology, University of Pittsburgh , Pittsburgh, PA 15232, United States","institution_ids":["https://openalex.org/I170201317"]},{"raw_affiliation_string":"UPMC Hillman Cancer Center, University of Pittsburgh , Pittsburgh, PA 15232, United States","institution_ids":["https://openalex.org/I4210128526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050450384","display_name":"Kai Wang","orcid":"https://orcid.org/0000-0002-8541-7563"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kai Wang","raw_affiliation_strings":["Department of Computational Medicine & Bioinformatics, University of Michigan , Ann Arbor, MI 48109, United States"],"affiliations":[{"raw_affiliation_string":"Department of Computational Medicine & Bioinformatics, University of Michigan , Ann Arbor, MI 48109, United States","institution_ids":["https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028712728","display_name":"Maureen A. Sartor","orcid":"https://orcid.org/0000-0001-6155-5702"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Maureen A Sartor","raw_affiliation_strings":["Department of Computational Medicine & Bioinformatics, University of Michigan , Ann Arbor, MI 48109, United States"],"affiliations":[{"raw_affiliation_string":"Department of Computational Medicine & Bioinformatics, University of Michigan , Ann Arbor, MI 48109, United States","institution_ids":["https://openalex.org/I27837315"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100724909","display_name":"Xiao\u2010Song Wang","orcid":"https://orcid.org/0000-0002-2570-7139"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]},{"id":"https://openalex.org/I4210128526","display_name":"UPMC Hillman Cancer Center","ror":"https://ror.org/03bw34a45","country_code":"US","type":"facility","lineage":["https://openalex.org/I170201317","https://openalex.org/I4210128526"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Xiao-Song Wang","raw_affiliation_strings":["Department of Biomedical Informatics, University of Pittsburgh , Pittsburgh, PA 15206, United States","Department of Pathology, University of Pittsburgh , Pittsburgh, PA 15232, United States","UPMC Hillman Cancer Center, University of Pittsburgh , Pittsburgh, PA 15232, United States"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, University of Pittsburgh , Pittsburgh, PA 15206, United States","institution_ids":["https://openalex.org/I170201317"]},{"raw_affiliation_string":"Department of Pathology, University of Pittsburgh , Pittsburgh, PA 15232, United States","institution_ids":["https://openalex.org/I170201317"]},{"raw_affiliation_string":"UPMC Hillman Cancer Center, University of Pittsburgh , Pittsburgh, PA 15232, United States","institution_ids":["https://openalex.org/I4210128526"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5100724909"],"corresponding_institution_ids":["https://openalex.org/I170201317","https://openalex.org/I4210128526"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.4568,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.66465713,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":"39","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9871000051498413,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6773756742477417},{"id":"https://openalex.org/keywords/leverage","display_name":"Leverage (statistics)","score":0.5755602717399597},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4899389147758484},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.45946264266967773},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.44853973388671875},{"id":"https://openalex.org/keywords/gene-expression-profiling","display_name":"Gene expression profiling","score":0.44015973806381226},{"id":"https://openalex.org/keywords/signature","display_name":"Signature (topology)","score":0.42824673652648926},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.4265791177749634},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.37678951025009155},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.35058486461639404},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3376135230064392},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.3354824483394623},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.14057031273841858},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.11684852838516235}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6773756742477417},{"id":"https://openalex.org/C153083717","wikidata":"https://www.wikidata.org/wiki/Q6535263","display_name":"Leverage (statistics)","level":2,"score":0.5755602717399597},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4899389147758484},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.45946264266967773},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.44853973388671875},{"id":"https://openalex.org/C18431079","wikidata":"https://www.wikidata.org/wiki/Q1502169","display_name":"Gene expression profiling","level":4,"score":0.44015973806381226},{"id":"https://openalex.org/C2779696439","wikidata":"https://www.wikidata.org/wiki/Q7512811","display_name":"Signature (topology)","level":2,"score":0.42824673652648926},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.4265791177749634},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.37678951025009155},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.35058486461639404},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3376135230064392},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.3354824483394623},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.14057031273841858},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11684852838516235},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000073359","descriptor_name":"Exome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073359","descriptor_name":"Exome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073359","descriptor_name":"Exome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btad325","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad325","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad325/50463778/btad325.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37243667","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37243667","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10275909","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10275909","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10275909/pdf/btad325.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad325","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad325","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad325/50463778/btad325.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1481567737","display_name":null,"funder_award_id":"P30 CA047904","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G1523577005","display_name":null,"funder_award_id":"CA097190","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G1954441224","display_name":null,"funder_award_id":"1R21CA237964","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2229577770","display_name":null,"funder_award_id":"OCI-105357","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2922803762","display_name":null,"funder_award_id":"45606","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G310123084","display_name":null,"funder_award_id":"OCI-1053575","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3116921031","display_name":null,"funder_award_id":"CA097190","funder_id":"https://openalex.org/F4320310174","funder_display_name":"University of Pittsburgh"},{"id":"https://openalex.org/G417905534","display_name":null,"funder_award_id":"XSEDE","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5439204177","display_name":null,"funder_award_id":"SPORE DRP","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5603718298","display_name":null,"funder_award_id":"047904","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5850682332","display_name":null,"funder_award_id":"W81XWH","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5921281487","display_name":null,"funder_award_id":"number","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6140672835","display_name":null,"funder_award_id":"1R01CA183976","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G630549769","display_name":null,"funder_award_id":"R21CA237964","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6345853531","display_name":null,"funder_award_id":"unknown","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6441648059","display_name":null,"funder_award_id":"CA047904","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6524269621","display_name":null,"funder_award_id":"OCI-1053575","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6566487891","display_name":null,"funder_award_id":"1R01CA181368","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6755165505","display_name":null,"funder_award_id":"award","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6778350887","display_name":null,"funder_award_id":"1053575","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6966134840","display_name":null,"funder_award_id":"P30 CA047904","funder_id":"https://openalex.org/F4320310174","funder_display_name":"University of Pittsburgh"},{"id":"https://openalex.org/G7295506139","display_name":null,"funder_award_id":"P50 CA097190","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7321585739","display_name":null,"funder_award_id":"OCI-1","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7404166632","display_name":"Bridges: From Communities and Data to Workflows and Insight","funder_award_id":"1445606","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7807906863","display_name":null,"funder_award_id":"P50 CA097190","funder_id":"https://openalex.org/F4320310174","funder_display_name":"University of Pittsburgh"},{"id":"https://openalex.org/G7992884429","display_name":null,"funder_award_id":"ACI-1445606","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8729765517","display_name":null,"funder_award_id":"ACI-1445606","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320310174","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320333934","display_name":"Center for Research Computing, University of Pittsburgh","ror":null},{"id":"https://openalex.org/F4320338273","display_name":"Congressionally Directed Medical Research Programs","ror":"https://ror.org/03g2zjp07"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4378549094.pdf"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W1967327758","https://openalex.org/W1972531632","https://openalex.org/W1977077509","https://openalex.org/W1988391018","https://openalex.org/W1989408678","https://openalex.org/W1999712302","https://openalex.org/W2011059916","https://openalex.org/W2035618305","https://openalex.org/W2052250375","https://openalex.org/W2058097237","https://openalex.org/W2066277278","https://openalex.org/W2066663722","https://openalex.org/W2071797615","https://openalex.org/W2107580398","https://openalex.org/W2130410032","https://openalex.org/W2140519688","https://openalex.org/W2146512944","https://openalex.org/W2146843224","https://openalex.org/W2159849045","https://openalex.org/W2164375593","https://openalex.org/W2179438025","https://openalex.org/W2224812643","https://openalex.org/W2273101790","https://openalex.org/W2511896561","https://openalex.org/W2522775671","https://openalex.org/W2567309032","https://openalex.org/W2583621343","https://openalex.org/W2612758576","https://openalex.org/W2616922646","https://openalex.org/W2757490447","https://openalex.org/W2766613948","https://openalex.org/W2807032301","https://openalex.org/W2902652978","https://openalex.org/W2947499198","https://openalex.org/W2950245999","https://openalex.org/W2951271761","https://openalex.org/W2952391626","https://openalex.org/W2981350712","https://openalex.org/W2981371529","https://openalex.org/W3007199577","https://openalex.org/W3013406975","https://openalex.org/W3015964336","https://openalex.org/W3105146463","https://openalex.org/W3109185287","https://openalex.org/W4237381349","https://openalex.org/W4251275831","https://openalex.org/W6731558535","https://openalex.org/W6768806997"],"related_works":["https://openalex.org/W2399513595","https://openalex.org/W4388386498","https://openalex.org/W2028462563","https://openalex.org/W2942994004","https://openalex.org/W2982720988","https://openalex.org/W3150324899","https://openalex.org/W2523545060","https://openalex.org/W4229998356","https://openalex.org/W4379374180","https://openalex.org/W2073305407"],"abstract_inverted_index":{"The":[0],"IndepthPathway":[1],"R":[2],"package":[3],"is":[4],"available":[5],"through:":[6],"https://github.com/wangxlab/IndepthPathway.":[7]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
