{"id":"https://openalex.org/W4382630879","doi":"https://doi.org/10.1093/bioinformatics/btad271","title":"An intrinsically interpretable neural network architecture for sequence-to-function learning","display_name":"An intrinsically interpretable neural network architecture for sequence-to-function learning","publication_year":2023,"publication_date":"2023-06-01","ids":{"openalex":"https://openalex.org/W4382630879","doi":"https://doi.org/10.1093/bioinformatics/btad271","pmid":"https://pubmed.ncbi.nlm.nih.gov/37387140"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad271","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad271","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/Supplement_1/i413/50741446/btad271.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/39/Supplement_1/i413/50741446/btad271.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056327834","display_name":"Ali Tu\u011frul Balc\u0131","orcid":"https://orcid.org/0000-0002-1461-6733"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]},{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ali Tu\u011frul Balc\u0131","raw_affiliation_strings":["Department of Computational and Systems Biology, University of Pittsburgh , Pittsburgh, PA 15213, United States","Joint Carnegie Mellon University-University of Pittsburgh Program in Computational Biology , Pittsburgh, PA 15213, United States"],"affiliations":[{"raw_affiliation_string":"Department of Computational and Systems Biology, University of Pittsburgh , Pittsburgh, PA 15213, United States","institution_ids":["https://openalex.org/I170201317"]},{"raw_affiliation_string":"Joint Carnegie Mellon University-University of Pittsburgh Program in Computational Biology , Pittsburgh, PA 15213, United States","institution_ids":["https://openalex.org/I74973139","https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073286119","display_name":"Mark Maher Ebeid","orcid":"https://orcid.org/0000-0002-9113-7082"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]},{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark Maher Ebeid","raw_affiliation_strings":["Department of Computational and Systems Biology, University of Pittsburgh , Pittsburgh, PA 15213, United States","Joint Carnegie Mellon University-University of Pittsburgh Program in Computational Biology , Pittsburgh, PA 15213, United States"],"affiliations":[{"raw_affiliation_string":"Department of Computational and Systems Biology, University of Pittsburgh , Pittsburgh, PA 15213, United States","institution_ids":["https://openalex.org/I170201317"]},{"raw_affiliation_string":"Joint Carnegie Mellon University-University of Pittsburgh Program in Computational Biology , Pittsburgh, PA 15213, United States","institution_ids":["https://openalex.org/I74973139","https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042618575","display_name":"Panayiotis V. Benos","orcid":"https://orcid.org/0000-0003-3172-3132"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Panayiotis V Benos","raw_affiliation_strings":["Department of Epidemiology, University of Florida , Gainesville, FL 32610, United States"],"affiliations":[{"raw_affiliation_string":"Department of Epidemiology, University of Florida , Gainesville, FL 32610, United States","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010346419","display_name":"Dennis Kostka","orcid":"https://orcid.org/0000-0002-1460-5487"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]},{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dennis Kostka","raw_affiliation_strings":["Department of Computational and Systems Biology, University of Pittsburgh , Pittsburgh, PA 15213, United States","Department of Developmental Biology, University of Pittsburgh , Pittsburgh, PA 15213, United States","Joint Carnegie Mellon University-University of Pittsburgh Program in Computational Biology , Pittsburgh, PA 15213, United States"],"affiliations":[{"raw_affiliation_string":"Department of Computational and Systems Biology, University of Pittsburgh , Pittsburgh, PA 15213, United States","institution_ids":["https://openalex.org/I170201317"]},{"raw_affiliation_string":"Department of Developmental Biology, University of Pittsburgh , Pittsburgh, PA 15213, United States","institution_ids":["https://openalex.org/I170201317"]},{"raw_affiliation_string":"Joint Carnegie Mellon University-University of Pittsburgh Program in Computational Biology , Pittsburgh, PA 15213, United States","institution_ids":["https://openalex.org/I74973139","https://openalex.org/I170201317"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5034705320","display_name":"Maria Chikina","orcid":"https://orcid.org/0000-0003-2550-5403"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]},{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Maria Chikina","raw_affiliation_strings":["Department of Computational and Systems Biology, University of Pittsburgh , Pittsburgh, PA 15213, United States","Joint Carnegie Mellon University-University of Pittsburgh Program in Computational Biology , Pittsburgh, PA 15213, United States"],"affiliations":[{"raw_affiliation_string":"Department of Computational and Systems Biology, University of Pittsburgh , Pittsburgh, PA 15213, United States","institution_ids":["https://openalex.org/I170201317"]},{"raw_affiliation_string":"Joint Carnegie Mellon University-University of Pittsburgh Program in Computational Biology , Pittsburgh, PA 15213, United States","institution_ids":["https://openalex.org/I74973139","https://openalex.org/I170201317"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5056327834"],"corresponding_institution_ids":["https://openalex.org/I170201317","https://openalex.org/I74973139"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.7526,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.7243262,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"39","issue":"Supplement_1","first_page":"i413","last_page":"i422"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7175444960594177},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5686651468276978},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5474527478218079},{"id":"https://openalex.org/keywords/sequence-motif","display_name":"Sequence motif","score":0.5400410890579224},{"id":"https://openalex.org/keywords/chromatin","display_name":"Chromatin","score":0.48199549317359924},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.47635579109191895},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.42820560932159424},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.4179069995880127},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4100494384765625},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3496019244194031},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.259521484375},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11700716614723206},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10458630323410034},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10007131099700928}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7175444960594177},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5686651468276978},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5474527478218079},{"id":"https://openalex.org/C117745874","wikidata":"https://www.wikidata.org/wiki/Q901612","display_name":"Sequence motif","level":3,"score":0.5400410890579224},{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.48199549317359924},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.47635579109191895},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.42820560932159424},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.4179069995880127},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4100494384765625},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3496019244194031},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.259521484375},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11700716614723206},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10458630323410034},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10007131099700928}],"mesh":[{"descriptor_ui":"D001402","descriptor_name":"B-Lymphocytes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001402","descriptor_name":"B-Lymphocytes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001402","descriptor_name":"B-Lymphocytes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007113","descriptor_name":"Immunity, Innate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007113","descriptor_name":"Immunity, Innate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007113","descriptor_name":"Immunity, Innate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008214","descriptor_name":"Lymphocytes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008214","descriptor_name":"Lymphocytes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008214","descriptor_name":"Lymphocytes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btad271","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad271","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/Supplement_1/i413/50741446/btad271.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37387140","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37387140","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10311317","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10311317","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10311317/pdf/btad271.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad271","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad271","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/Supplement_1/i413/50741446/btad271.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1753227303","display_name":null,"funder_award_id":"S10OD02848","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2364596853","display_name":null,"funder_award_id":"RRID:SCR_022735","funder_id":"https://openalex.org/F4320333934","funder_display_name":"Center for Research Computing, University of Pittsburgh"},{"id":"https://openalex.org/G2592393619","display_name":null,"funder_award_id":"SCR_022735","funder_id":"https://openalex.org/F4320333934","funder_display_name":"Center for Research Computing, University of Pittsburgh"},{"id":"https://openalex.org/G3037134420","display_name":null,"funder_award_id":"RRID:SCR_022735","funder_id":"https://openalex.org/F4320310174","funder_display_name":"University of Pittsburgh"},{"id":"https://openalex.org/G3938010021","display_name":null,"funder_award_id":"S10OD028483","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4272805910","display_name":null,"funder_award_id":"R01AI04360321","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4412198822","display_name":null,"funder_award_id":"N6600119C4022","funder_id":"https://openalex.org/F4320332180","funder_display_name":"Defense Advanced Research Projects Agency"},{"id":"https://openalex.org/G4501317270","display_name":null,"funder_award_id":"2238125","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6084658512","display_name":null,"funder_award_id":"SCR_022735","funder_id":"https://openalex.org/F4320310174","funder_display_name":"University of Pittsburgh"},{"id":"https://openalex.org/G6200706666","display_name":null,"funder_award_id":"R01EY030546","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6267253624","display_name":null,"funder_award_id":"R01HL157879","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G642779400","display_name":null,"funder_award_id":"S10OD028483","funder_id":"https://openalex.org/F4320310174","funder_display_name":"University of Pittsburgh"},{"id":"https://openalex.org/G7735959302","display_name":null,"funder_award_id":"R01HL159805","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8027025126","display_name":null,"funder_award_id":"R01HL127349","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8143384033","display_name":null,"funder_award_id":"EY030546","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G865749150","display_name":null,"funder_award_id":"S10OD028483","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G870136314","display_name":null,"funder_award_id":"R01HG009299","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8715807965","display_name":null,"funder_award_id":"U24DK112331","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320310174","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332180","display_name":"Defense Advanced Research Projects Agency","ror":"https://ror.org/02caytj08"},{"id":"https://openalex.org/F4320333934","display_name":"Center for Research Computing, University of Pittsburgh","ror":null}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4382630879.pdf"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W1019830208","https://openalex.org/W2020491954","https://openalex.org/W2033169664","https://openalex.org/W2059498834","https://openalex.org/W2064781075","https://openalex.org/W2101095383","https://openalex.org/W2111395080","https://openalex.org/W2122140726","https://openalex.org/W2127021450","https://openalex.org/W2127738098","https://openalex.org/W2133773754","https://openalex.org/W2148032724","https://openalex.org/W2158799524","https://openalex.org/W2198606573","https://openalex.org/W2259938310","https://openalex.org/W2336509392","https://openalex.org/W2343888903","https://openalex.org/W2345512687","https://openalex.org/W2794341976","https://openalex.org/W2953051599","https://openalex.org/W2973429485","https://openalex.org/W2995175313","https://openalex.org/W3043814837","https://openalex.org/W3088687225","https://openalex.org/W3121111775","https://openalex.org/W3130819465","https://openalex.org/W3133173575","https://openalex.org/W3183538648","https://openalex.org/W3196944487","https://openalex.org/W3203534990","https://openalex.org/W3203588026","https://openalex.org/W3204037664","https://openalex.org/W4212774754","https://openalex.org/W4224237407","https://openalex.org/W4225987124","https://openalex.org/W4298339254","https://openalex.org/W4382343955"],"related_works":["https://openalex.org/W2341492732","https://openalex.org/W3187193180","https://openalex.org/W106542691","https://openalex.org/W4287027380","https://openalex.org/W4226493464","https://openalex.org/W4312417841","https://openalex.org/W3193565141","https://openalex.org/W3133861977","https://openalex.org/W3167935049","https://openalex.org/W3029198973"],"abstract_inverted_index":{"The":[0],"source":[1],"code,":[2],"including":[3],"scripts":[4],"for":[5],"the":[6],"analysis":[7],"of":[8],"key":[9],"findings,":[10],"can":[11],"be":[12],"found":[13],"at":[14],"https://github.com/boooooogey/ATAConv,":[15],"implemented":[16],"in":[17],"Python.":[18]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
