{"id":"https://openalex.org/W4382632004","doi":"https://doi.org/10.1093/bioinformatics/btad207","title":"ArkDTA: attention regularization guided by non-covalent interactions for explainable drug\u2013target binding affinity prediction","display_name":"ArkDTA: attention regularization guided by non-covalent interactions for explainable drug\u2013target binding affinity prediction","publication_year":2023,"publication_date":"2023-06-01","ids":{"openalex":"https://openalex.org/W4382632004","doi":"https://doi.org/10.1093/bioinformatics/btad207","pmid":"https://pubmed.ncbi.nlm.nih.gov/37387164"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad207","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad207","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/Supplement_1/i448/50741623/btad207.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/39/Supplement_1/i448/50741623/btad207.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053433671","display_name":"Mogan Gim","orcid":"https://orcid.org/0000-0002-6458-7723"},"institutions":[{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Mogan Gim","raw_affiliation_strings":["Department of Computer Science and Engineering, Korea University , Seoul 02841, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Korea University , Seoul 02841, Republic of Korea","institution_ids":["https://openalex.org/I197347611"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017744069","display_name":"Junseok Choe","orcid":"https://orcid.org/0000-0001-9548-7146"},"institutions":[{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Junseok Choe","raw_affiliation_strings":["Department of Computer Science and Engineering, Korea University , Seoul 02841, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Korea University , Seoul 02841, Republic of Korea","institution_ids":["https://openalex.org/I197347611"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103230242","display_name":"Seungheun Baek","orcid":"https://orcid.org/0000-0002-3231-478X"},"institutions":[{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Seungheun Baek","raw_affiliation_strings":["Department of Computer Science and Engineering, Korea University , Seoul 02841, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Korea University , Seoul 02841, Republic of Korea","institution_ids":["https://openalex.org/I197347611"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067305253","display_name":"Jueon Park","orcid":null},"institutions":[{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jueon Park","raw_affiliation_strings":["Department of Computer Science and Engineering, Korea University , Seoul 02841, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Korea University , Seoul 02841, Republic of Korea","institution_ids":["https://openalex.org/I197347611"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091820256","display_name":"Chaeeun Lee","orcid":"https://orcid.org/0000-0003-3778-6177"},"institutions":[{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Chaeeun Lee","raw_affiliation_strings":["Department of Computer Science and Engineering, Korea University , Seoul 02841, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Korea University , Seoul 02841, Republic of Korea","institution_ids":["https://openalex.org/I197347611"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023338550","display_name":"Minjae Ju","orcid":"https://orcid.org/0009-0003-4048-4089"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Minjae Ju","raw_affiliation_strings":["LG CNS, AI Research Center , Seoul 07795, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"LG CNS, AI Research Center , Seoul 07795, Republic of Korea","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100726743","display_name":"Sumin Lee","orcid":"https://orcid.org/0000-0002-6204-0556"},"institutions":[{"id":"https://openalex.org/I4210131320","display_name":"LG (South Korea)","ror":"https://ror.org/03ddh2c27","country_code":"KR","type":"company","lineage":["https://openalex.org/I4210131320"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Sumin Lee","raw_affiliation_strings":["LG AI Research , Seoul 07795, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"LG AI Research , Seoul 07795, Republic of Korea","institution_ids":["https://openalex.org/I4210131320"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076917278","display_name":"Jaewoo Kang","orcid":"https://orcid.org/0000-0001-6798-9106"},"institutions":[{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jaewoo Kang","raw_affiliation_strings":["AIGEN Sciences , Seoul 04778, Republic of Korea","Department of Computer Science and Engineering, Korea University , Seoul 02841, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"AIGEN Sciences , Seoul 04778, Republic of Korea","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science and Engineering, Korea University , Seoul 02841, Republic of Korea","institution_ids":["https://openalex.org/I197347611"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5053433671"],"corresponding_institution_ids":["https://openalex.org/I197347611"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":4.2878,"has_fulltext":true,"cited_by_count":22,"citation_normalized_percentile":{"value":0.95303684,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"39","issue":"Supplement_1","first_page":"i448","last_page":"i457"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11440","display_name":"Click Chemistry and Applications","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/1605","display_name":"Organic Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/drug-target","display_name":"Drug target","score":0.6077243089675903},{"id":"https://openalex.org/keywords/regularization","display_name":"Regularization (linguistics)","score":0.5738775730133057},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.513913631439209},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.4580361843109131},{"id":"https://openalex.org/keywords/covalent-bond","display_name":"Covalent bond","score":0.42147091031074524},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.41737353801727295},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4143165051937103},{"id":"https://openalex.org/keywords/combinatorial-chemistry","display_name":"Combinatorial chemistry","score":0.39084702730178833},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3071499764919281},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.19521278142929077},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.17685160040855408},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.14577212929725647},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13534027338027954},{"id":"https://openalex.org/keywords/organic-chemistry","display_name":"Organic chemistry","score":0.06801646947860718}],"concepts":[{"id":"https://openalex.org/C2989108626","wikidata":"https://www.wikidata.org/wiki/Q904407","display_name":"Drug target","level":2,"score":0.6077243089675903},{"id":"https://openalex.org/C2776135515","wikidata":"https://www.wikidata.org/wiki/Q17143721","display_name":"Regularization (linguistics)","level":2,"score":0.5738775730133057},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.513913631439209},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.4580361843109131},{"id":"https://openalex.org/C180577832","wikidata":"https://www.wikidata.org/wiki/Q127920","display_name":"Covalent bond","level":2,"score":0.42147091031074524},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.41737353801727295},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4143165051937103},{"id":"https://openalex.org/C21951064","wikidata":"https://www.wikidata.org/wiki/Q899212","display_name":"Combinatorial chemistry","level":1,"score":0.39084702730178833},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3071499764919281},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.19521278142929077},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.17685160040855408},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.14577212929725647},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13534027338027954},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.06801646947860718}],"mesh":[{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016503","descriptor_name":"Drug Delivery Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016503","descriptor_name":"Drug Delivery Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016503","descriptor_name":"Drug Delivery Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btad207","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad207","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/Supplement_1/i448/50741623/btad207.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37387164","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37387164","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10311339","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10311339","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10311339/pdf/btad207.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad207","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad207","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/Supplement_1/i448/50741623/btad207.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1336813462","display_name":null,"funder_award_id":"IITP-2023-2020-0-01819","funder_id":"https://openalex.org/F4320328359","funder_display_name":"Ministry of Science and ICT, South Korea"},{"id":"https://openalex.org/G3497368782","display_name":null,"funder_award_id":"NRF-2023R1A2C3004176","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"},{"id":"https://openalex.org/G8018065544","display_name":null,"funder_award_id":"2020-0-01819","funder_id":"https://openalex.org/F4320328359","funder_display_name":"Ministry of Science and ICT, South Korea"},{"id":"https://openalex.org/G8285762245","display_name":null,"funder_award_id":"IITP-2023-2020-0-01819","funder_id":"https://openalex.org/F4320335489","funder_display_name":"Institute for Information and Communications Technology Promotion"},{"id":"https://openalex.org/G8645669373","display_name":null,"funder_award_id":"2023-2020-0-01819","funder_id":"https://openalex.org/F4320335489","funder_display_name":"Institute for Information and Communications Technology Promotion"},{"id":"https://openalex.org/G8932255049","display_name":null,"funder_award_id":"2023R1A2C3004176","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"},{"id":"https://openalex.org/G982292920","display_name":null,"funder_award_id":"NRF-20","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"}],"funders":[{"id":"https://openalex.org/F4320320671","display_name":"National Research Foundation","ror":"https://ror.org/05s0g1g46"},{"id":"https://openalex.org/F4320322120","display_name":"National Research Foundation of Korea","ror":"https://ror.org/013aysd81"},{"id":"https://openalex.org/F4320328359","display_name":"Ministry of Science and ICT, South Korea","ror":"https://ror.org/01wpjm123"},{"id":"https://openalex.org/F4320335489","display_name":"Institute for Information and Communications Technology Promotion","ror":"https://ror.org/01g0hqq23"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4382632004.pdf"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W2060531713","https://openalex.org/W2064264167","https://openalex.org/W2086286404","https://openalex.org/W2109991441","https://openalex.org/W2331484215","https://openalex.org/W2527728575","https://openalex.org/W2547644556","https://openalex.org/W2587598315","https://openalex.org/W2605952223","https://openalex.org/W2612690371","https://openalex.org/W2783494010","https://openalex.org/W2785947426","https://openalex.org/W2790808809","https://openalex.org/W2802224675","https://openalex.org/W2977595407","https://openalex.org/W2981992332","https://openalex.org/W3004817371","https://openalex.org/W3008865298","https://openalex.org/W3019745511","https://openalex.org/W3028589594","https://openalex.org/W3081876271","https://openalex.org/W3096561213","https://openalex.org/W3146944767","https://openalex.org/W3159177617","https://openalex.org/W3206585172","https://openalex.org/W4205171481","https://openalex.org/W4205511145","https://openalex.org/W4224981527","https://openalex.org/W4226144568","https://openalex.org/W4284974145","https://openalex.org/W4307468223","https://openalex.org/W4309908854","https://openalex.org/W4311448089","https://openalex.org/W6739901393","https://openalex.org/W6847627750"],"related_works":["https://openalex.org/W4389235921","https://openalex.org/W2400949416","https://openalex.org/W2592612636","https://openalex.org/W2307616518","https://openalex.org/W2766495134","https://openalex.org/W2081273895","https://openalex.org/W4320491371","https://openalex.org/W4200390855","https://openalex.org/W2073915748","https://openalex.org/W4390443207"],"abstract_inverted_index":{"kangj@korea.ac.kr.":[0]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":2}],"updated_date":"2026-04-19T08:26:33.389920","created_date":"2025-10-10T00:00:00"}
