{"id":"https://openalex.org/W4328048778","doi":"https://doi.org/10.1093/bioinformatics/btad140","title":"IntestLine: a shiny-based application to map the rolled intestinal tissue onto a line","display_name":"IntestLine: a shiny-based application to map the rolled intestinal tissue onto a line","publication_year":2023,"publication_date":"2023-03-21","ids":{"openalex":"https://openalex.org/W4328048778","doi":"https://doi.org/10.1093/bioinformatics/btad140","pmid":"https://pubmed.ncbi.nlm.nih.gov/36943334"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad140","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad140","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad140/49583752/btad140.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad140/49583752/btad140.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059705929","display_name":"Altay Yuzeir","orcid":"https://orcid.org/0000-0003-4457-6987"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Altay Yuzeir","raw_affiliation_strings":["Quantitative Systems Biology, Life & Medical Sciences (LIMES) Institute, University of Bonn , Bonn 53115, Germany","Quantitative Systems Biology, Life & Medical Sciences (LIMES) Institute, University of Bonn, Bonn, 53115, Germany"],"affiliations":[{"raw_affiliation_string":"Quantitative Systems Biology, Life & Medical Sciences (LIMES) Institute, University of Bonn , Bonn 53115, Germany","institution_ids":["https://openalex.org/I135140700"]},{"raw_affiliation_string":"Quantitative Systems Biology, Life & Medical Sciences (LIMES) Institute, University of Bonn, Bonn, 53115, Germany","institution_ids":["https://openalex.org/I135140700"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027895601","display_name":"David Alejandro Bejarano","orcid":"https://orcid.org/0000-0001-7804-0131"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"David Alejandro Bejarano","raw_affiliation_strings":["Quantitative Systems Biology, Life & Medical Sciences (LIMES) Institute, University of Bonn , Bonn 53115, Germany","Quantitative Systems Biology, Life & Medical Sciences (LIMES) Institute, University of Bonn, Bonn, 53115, Germany"],"affiliations":[{"raw_affiliation_string":"Quantitative Systems Biology, Life & Medical Sciences (LIMES) Institute, University of Bonn , Bonn 53115, Germany","institution_ids":["https://openalex.org/I135140700"]},{"raw_affiliation_string":"Quantitative Systems Biology, Life & Medical Sciences (LIMES) Institute, University of Bonn, Bonn, 53115, Germany","institution_ids":["https://openalex.org/I135140700"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048103149","display_name":"Stephan Grein","orcid":"https://orcid.org/0000-0001-9524-6633"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Stephan Grein","raw_affiliation_strings":["Faculty of Mathematics and Natural Sciences, University of Bonn , Bonn 53115, Germany","Faculty of Mathematics and Natural Sciences, University of Bonn, Bonn, 53115, Germany"],"affiliations":[{"raw_affiliation_string":"Faculty of Mathematics and Natural Sciences, University of Bonn , Bonn 53115, Germany","institution_ids":["https://openalex.org/I135140700"]},{"raw_affiliation_string":"Faculty of Mathematics and Natural Sciences, University of Bonn, Bonn, 53115, Germany","institution_ids":["https://openalex.org/I135140700"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063254041","display_name":"Jan Hasenauer","orcid":"https://orcid.org/0000-0002-4935-3312"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Zentrum M\u00fcnchen","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Jan Hasenauer","raw_affiliation_strings":["Faculty of Mathematics and Natural Sciences, University of Bonn , Bonn 53115, Germany","Institute for Computational Biology, Helmholtz Center Munich\u2014German Research Center for Environmental Health , Neuherberg 85764, Germany","Faculty of Mathematics and Natural Sciences, University of Bonn, Bonn, 53115, Germany"],"affiliations":[{"raw_affiliation_string":"Faculty of Mathematics and Natural Sciences, University of Bonn , Bonn 53115, Germany","institution_ids":["https://openalex.org/I135140700"]},{"raw_affiliation_string":"Institute for Computational Biology, Helmholtz Center Munich\u2014German Research Center for Environmental Health , Neuherberg 85764, Germany","institution_ids":["https://openalex.org/I3018134672"]},{"raw_affiliation_string":"Faculty of Mathematics and Natural Sciences, University of Bonn, Bonn, 53115, Germany","institution_ids":["https://openalex.org/I135140700"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088693540","display_name":"Andreas Schlitzer","orcid":"https://orcid.org/0000-0001-7662-3712"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Andreas Schlitzer","raw_affiliation_strings":["Quantitative Systems Biology, Life & Medical Sciences (LIMES) Institute, University of Bonn , Bonn 53115, Germany","Quantitative Systems Biology, Life & Medical Sciences (LIMES) Institute, University of Bonn, Bonn, 53115, Germany"],"affiliations":[{"raw_affiliation_string":"Quantitative Systems Biology, Life & Medical Sciences (LIMES) Institute, University of Bonn , Bonn 53115, Germany","institution_ids":["https://openalex.org/I135140700"]},{"raw_affiliation_string":"Quantitative Systems Biology, Life & Medical Sciences (LIMES) Institute, University of Bonn, Bonn, 53115, Germany","institution_ids":["https://openalex.org/I135140700"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071689057","display_name":"Jiangyan Yu","orcid":"https://orcid.org/0000-0003-0953-9136"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Jiangyan Yu","raw_affiliation_strings":["Quantitative Systems Biology, Life & Medical Sciences (LIMES) Institute, University of Bonn , Bonn 53115, Germany","Quantitative Systems Biology, Life & Medical Sciences (LIMES) Institute, University of Bonn, Bonn, 53115, Germany"],"affiliations":[{"raw_affiliation_string":"Quantitative Systems Biology, Life & Medical Sciences (LIMES) Institute, University of Bonn , Bonn 53115, Germany","institution_ids":["https://openalex.org/I135140700"]},{"raw_affiliation_string":"Quantitative Systems Biology, Life & Medical Sciences (LIMES) Institute, University of Bonn, Bonn, 53115, Germany","institution_ids":["https://openalex.org/I135140700"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5063254041","https://openalex.org/A5071689057","https://openalex.org/A5088693540"],"corresponding_institution_ids":["https://openalex.org/I135140700","https://openalex.org/I3018134672"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.0613,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.83220545,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"39","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7072427868843079},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7026418447494507},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.6622452735900879},{"id":"https://openalex.org/keywords/line","display_name":"Line (geometry)","score":0.5314615964889526},{"id":"https://openalex.org/keywords/large-intestine","display_name":"Large intestine","score":0.5241016149520874},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.47259029746055603},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.4417480230331421},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.36343175172805786},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34251677989959717},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.32727324962615967},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.25972479581832886},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2052573263645172},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11429926753044128},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08625325560569763}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7072427868843079},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7026418447494507},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.6622452735900879},{"id":"https://openalex.org/C198352243","wikidata":"https://www.wikidata.org/wiki/Q37105","display_name":"Line (geometry)","level":2,"score":0.5314615964889526},{"id":"https://openalex.org/C2776280935","wikidata":"https://www.wikidata.org/wiki/Q11083","display_name":"Large intestine","level":2,"score":0.5241016149520874},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.47259029746055603},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.4417480230331421},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.36343175172805786},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34251677989959717},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.32727324962615967},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.25972479581832886},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2052573263645172},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11429926753044128},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08625325560569763},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007422","descriptor_name":"Intestines","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":true},{"descriptor_ui":"D007422","descriptor_name":"Intestines","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":true},{"descriptor_ui":"D007422","descriptor_name":"Intestines","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btad140","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad140","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad140/49583752/btad140.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36943334","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36943334","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10081871","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10081871","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10081871/pdf/btad140.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:push-zb.helmholtz-munich.de:67705","is_oa":true,"landing_page_url":"https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=67705","pdf_url":null,"source":{"id":"https://openalex.org/S7407055352","display_name":"PuSH - Publication Server of Helmholtz Zentrum M\u00fcnchen","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics 39:2 (2023)","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad140","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad140","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btad140/49583752/btad140.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7469274427","display_name":null,"funder_award_id":"SFB 145","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8330397625","display_name":null,"funder_award_id":"Funding","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8429607460","display_name":null,"funder_award_id":"SFB 1454","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320328568","display_name":"Hausdorff Center for Mathematics","ror":null}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4328048778.pdf"},"referenced_works_count":6,"referenced_works":["https://openalex.org/W2460600979","https://openalex.org/W3194189918","https://openalex.org/W3196897371","https://openalex.org/W4205091810","https://openalex.org/W4206903306","https://openalex.org/W4211012557"],"related_works":["https://openalex.org/W2068608913","https://openalex.org/W2113128227","https://openalex.org/W632256878","https://openalex.org/W4211197663","https://openalex.org/W2491403535","https://openalex.org/W3081644756","https://openalex.org/W3123068371","https://openalex.org/W2479811461","https://openalex.org/W2104915799","https://openalex.org/W2355429491"],"abstract_inverted_index":{"Source":[0],"code":[1],"can":[2],"be":[3],"found":[4],"at":[5],"Zenodo":[6],"(https://doi.org/10.5281/zenodo.7081864)":[7],"and":[8],"GitHub":[9],"(https://github.com/SchlitzerLab/IntestLine).":[10]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
