{"id":"https://openalex.org/W4319460354","doi":"https://doi.org/10.1093/bioinformatics/btad082","title":"ARAX: a graph-based modular reasoning tool for translational biomedicine","display_name":"ARAX: a graph-based modular reasoning tool for translational biomedicine","publication_year":2023,"publication_date":"2023-02-07","ids":{"openalex":"https://openalex.org/W4319460354","doi":"https://doi.org/10.1093/bioinformatics/btad082","pmid":"https://pubmed.ncbi.nlm.nih.gov/36752514"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btad082","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad082","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/3/btad082/49572019/btad082.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/39/3/btad082/49572019/btad082.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079615149","display_name":"Amy K. Glen","orcid":"https://orcid.org/0000-0003-3691-2290"},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Amy K Glen","raw_affiliation_strings":["School of Electrical Engineering and Computer Science, Oregon State University , Corvallis, OR 97331, USA"],"affiliations":[{"raw_affiliation_string":"School of Electrical Engineering and Computer Science, Oregon State University , Corvallis, OR 97331, USA","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004607409","display_name":"Chunyu Ma","orcid":"https://orcid.org/0000-0001-9731-5153"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chunyu Ma","raw_affiliation_strings":["Huck Institutes of the Life Sciences, Pennsylvania State University , State College, PA 16802, USA"],"affiliations":[{"raw_affiliation_string":"Huck Institutes of the Life Sciences, Pennsylvania State University , State College, PA 16802, USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079842634","display_name":"Luis Mendoza","orcid":"https://orcid.org/0000-0003-0128-8643"},"institutions":[{"id":"https://openalex.org/I3148997608","display_name":"Institute for Systems Biology","ror":"https://ror.org/02tpgw303","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I3148997608"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Luis Mendoza","raw_affiliation_strings":["Institute for Systems Biology , Seattle, WA 98109, USA"],"affiliations":[{"raw_affiliation_string":"Institute for Systems Biology , Seattle, WA 98109, USA","institution_ids":["https://openalex.org/I3148997608"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062044463","display_name":"Finn Womack","orcid":"https://orcid.org/0000-0003-0710-5836"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Finn Womack","raw_affiliation_strings":["Huck Institutes of the Life Sciences, Pennsylvania State University , State College, PA 16802, USA"],"affiliations":[{"raw_affiliation_string":"Huck Institutes of the Life Sciences, Pennsylvania State University , State College, PA 16802, USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044669525","display_name":"E. C. Wood","orcid":"https://orcid.org/0000-0003-3890-4040"},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"E C Wood","raw_affiliation_strings":["School of Electrical Engineering and Computer Science, Oregon State University , Corvallis, OR 97331, USA"],"affiliations":[{"raw_affiliation_string":"School of Electrical Engineering and Computer Science, Oregon State University , Corvallis, OR 97331, USA","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041407852","display_name":"Meghamala Sinha","orcid":"https://orcid.org/0000-0002-6422-3313"},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Meghamala Sinha","raw_affiliation_strings":["School of Electrical Engineering and Computer Science, Oregon State University , Corvallis, OR 97331, USA"],"affiliations":[{"raw_affiliation_string":"School of Electrical Engineering and Computer Science, Oregon State University , Corvallis, OR 97331, USA","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018772271","display_name":"Liliana Acevedo","orcid":null},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Liliana Acevedo","raw_affiliation_strings":["School of Electrical Engineering and Computer Science, Oregon State University , Corvallis, OR 97331, USA"],"affiliations":[{"raw_affiliation_string":"School of Electrical Engineering and Computer Science, Oregon State University , Corvallis, OR 97331, USA","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058920755","display_name":"Lindsey G. Kvarfordt","orcid":null},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lindsey G Kvarfordt","raw_affiliation_strings":["School of Electrical Engineering and Computer Science, Oregon State University , Corvallis, OR 97331, USA"],"affiliations":[{"raw_affiliation_string":"School of Electrical Engineering and Computer Science, Oregon State University , Corvallis, OR 97331, USA","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014144805","display_name":"Ross C. Peene","orcid":null},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ross C Peene","raw_affiliation_strings":["School of Electrical Engineering and Computer Science, Oregon State University , Corvallis, OR 97331, USA"],"affiliations":[{"raw_affiliation_string":"School of Electrical Engineering and Computer Science, Oregon State University , Corvallis, OR 97331, USA","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101724582","display_name":"Shaopeng Liu","orcid":"https://orcid.org/0000-0003-0539-083X"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shaopeng Liu","raw_affiliation_strings":["Huck Institutes of the Life Sciences, Pennsylvania State University , State College, PA 16802, USA"],"affiliations":[{"raw_affiliation_string":"Huck Institutes of the Life Sciences, Pennsylvania State University , State College, PA 16802, USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021050539","display_name":"Andrew Hoffman","orcid":"https://orcid.org/0000-0001-6137-4047"},"institutions":[{"id":"https://openalex.org/I145872427","display_name":"Radboud University Nijmegen","ror":"https://ror.org/016xsfp80","country_code":"NL","type":"education","lineage":["https://openalex.org/I145872427"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Andrew S Hoffman","raw_affiliation_strings":["Interdisciplinary Hub for Digitalization and Society, Radboud University , Nijmegen 6500GL, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Interdisciplinary Hub for Digitalization and Society, Radboud University , Nijmegen 6500GL, The Netherlands","institution_ids":["https://openalex.org/I145872427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023566803","display_name":"Jared C. Roach","orcid":"https://orcid.org/0000-0003-4524-0107"},"institutions":[{"id":"https://openalex.org/I3148997608","display_name":"Institute for Systems Biology","ror":"https://ror.org/02tpgw303","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I3148997608"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jared C Roach","raw_affiliation_strings":["Institute for Systems Biology , Seattle, WA 98109, USA"],"affiliations":[{"raw_affiliation_string":"Institute for Systems Biology , Seattle, WA 98109, USA","institution_ids":["https://openalex.org/I3148997608"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070102563","display_name":"Eric W. Deutsch","orcid":"https://orcid.org/0000-0001-8732-0928"},"institutions":[{"id":"https://openalex.org/I3148997608","display_name":"Institute for Systems Biology","ror":"https://ror.org/02tpgw303","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I3148997608"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric W Deutsch","raw_affiliation_strings":["Institute for Systems Biology , Seattle, WA 98109, USA"],"affiliations":[{"raw_affiliation_string":"Institute for Systems Biology , Seattle, WA 98109, USA","institution_ids":["https://openalex.org/I3148997608"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091354698","display_name":"Stephen A. Ramsey","orcid":"https://orcid.org/0000-0002-2168-5403"},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stephen A Ramsey","raw_affiliation_strings":["Department of Biomedical Sciences, Oregon State University , Corvallis, OR 97331, USA","School of Electrical Engineering and Computer Science, Oregon State University , Corvallis, OR 97331, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Sciences, Oregon State University , Corvallis, OR 97331, USA","institution_ids":["https://openalex.org/I131249849"]},{"raw_affiliation_string":"School of Electrical Engineering and Computer Science, Oregon State University , Corvallis, OR 97331, USA","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002668669","display_name":"David Koslicki","orcid":"https://orcid.org/0000-0002-0640-954X"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"David Koslicki","raw_affiliation_strings":["Department of Biology, Pennsylvania State University , State College, PA 16801, USA","Department of Computer Science and Engineering, Pennsylvania State University , State College, PA 16802, USA","Huck Institutes of the Life Sciences, Pennsylvania State University , State College, PA 16802, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biology, Pennsylvania State University , State College, PA 16801, USA","institution_ids":["https://openalex.org/I130769515"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, Pennsylvania State University , State College, PA 16802, USA","institution_ids":["https://openalex.org/I130769515"]},{"raw_affiliation_string":"Huck Institutes of the Life Sciences, Pennsylvania State University , State College, PA 16802, USA","institution_ids":["https://openalex.org/I130769515"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":15,"corresponding_author_ids":["https://openalex.org/A5002668669"],"corresponding_institution_ids":["https://openalex.org/I130769515"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.7555,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.71525109,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"39","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.828568696975708},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6184476613998413},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.47586148977279663},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.4725330173969269},{"id":"https://openalex.org/keywords/application-programming-interface","display_name":"Application programming interface","score":0.47196710109710693},{"id":"https://openalex.org/keywords/biomedicine","display_name":"Biomedicine","score":0.4532805383205414},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.4413708448410034},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3759373426437378},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.236019104719162},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.19664627313613892},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.16430708765983582}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.828568696975708},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6184476613998413},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.47586148977279663},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.4725330173969269},{"id":"https://openalex.org/C99613125","wikidata":"https://www.wikidata.org/wiki/Q165194","display_name":"Application programming interface","level":2,"score":0.47196710109710693},{"id":"https://openalex.org/C66782513","wikidata":"https://www.wikidata.org/wiki/Q864601","display_name":"Biomedicine","level":2,"score":0.4532805383205414},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.4413708448410034},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3759373426437378},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.236019104719162},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.19664627313613892},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.16430708765983582},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btad082","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad082","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/3/btad082/49572019/btad082.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36752514","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36752514","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10027432","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10027432","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10027432/pdf/btad082.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:repository.ubn.ru.nl:2066/293058","is_oa":true,"landing_page_url":"https://repository.ubn.ru.nl/handle/2066/293058","pdf_url":"https://repository.ubn.ru.nl//bitstream/handle/2066/293058/293058.pdf","source":{"id":"https://openalex.org/S4306401067","display_name":"Radboud Repository (Radboud University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I145872427","host_organization_name":"Radboud University Nijmegen","host_organization_lineage":["https://openalex.org/I145872427"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article / Letter to editor"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btad082","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btad082","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/39/3/btad082/49572019/btad082.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1504344247","display_name":null,"funder_award_id":"OT2TR003428","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2789588635","display_name":null,"funder_award_id":"NCATS","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5340848570","display_name":null,"funder_award_id":"OT2TR003428","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G5678539445","display_name":null,"funder_award_id":"OT2TR002520","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G6214217787","display_name":null,"funder_award_id":"OT2TR002520","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320310358","display_name":"Achievement Rewards for College Scientists Foundation","ror":"https://ror.org/054awkm93"},{"id":"https://openalex.org/F4320310598","display_name":"Amazon Web Services","ror":"https://ror.org/04mv4n011"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337472","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4319460354.pdf"},"referenced_works_count":58,"referenced_works":["https://openalex.org/W73222560","https://openalex.org/W160318044","https://openalex.org/W1509396824","https://openalex.org/W1996564262","https://openalex.org/W2095446052","https://openalex.org/W2108574809","https://openalex.org/W2113142309","https://openalex.org/W2117446654","https://openalex.org/W2159482845","https://openalex.org/W2159583324","https://openalex.org/W2170146596","https://openalex.org/W2209694036","https://openalex.org/W2257876130","https://openalex.org/W2405275595","https://openalex.org/W2510734833","https://openalex.org/W2519564115","https://openalex.org/W2537679995","https://openalex.org/W2558643140","https://openalex.org/W2610569243","https://openalex.org/W2786122698","https://openalex.org/W2899915536","https://openalex.org/W2900090807","https://openalex.org/W2900810415","https://openalex.org/W2902940096","https://openalex.org/W2942493317","https://openalex.org/W2949311246","https://openalex.org/W2952880826","https://openalex.org/W2961798429","https://openalex.org/W2962756421","https://openalex.org/W2968353232","https://openalex.org/W3003257820","https://openalex.org/W3023915741","https://openalex.org/W3026892087","https://openalex.org/W3091851287","https://openalex.org/W3093244828","https://openalex.org/W3103145119","https://openalex.org/W3112376646","https://openalex.org/W3119203274","https://openalex.org/W3129869280","https://openalex.org/W3131568121","https://openalex.org/W3165737823","https://openalex.org/W3205237291","https://openalex.org/W3208556307","https://openalex.org/W4225677225","https://openalex.org/W4226030513","https://openalex.org/W4237358891","https://openalex.org/W4239538372","https://openalex.org/W4255757807","https://openalex.org/W4280499250","https://openalex.org/W4281704579","https://openalex.org/W4294216483","https://openalex.org/W4298005542","https://openalex.org/W4317936392","https://openalex.org/W6602996861","https://openalex.org/W6692126448","https://openalex.org/W6713841166","https://openalex.org/W6790991313","https://openalex.org/W6848578113"],"related_works":["https://openalex.org/W2017899917","https://openalex.org/W2080571363","https://openalex.org/W2481322495","https://openalex.org/W2898682754","https://openalex.org/W2889841093","https://openalex.org/W4246603716","https://openalex.org/W4244946961","https://openalex.org/W2915114672","https://openalex.org/W4221141299","https://openalex.org/W2073875337"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":1}],"updated_date":"2026-04-17T18:11:37.981687","created_date":"2025-10-10T00:00:00"}