{"id":"https://openalex.org/W4295886447","doi":"https://doi.org/10.1093/bioinformatics/btac597","title":"MGPLI: exploring multigranular representations for protein\u2013ligand interaction prediction","display_name":"MGPLI: exploring multigranular representations for protein\u2013ligand interaction prediction","publication_year":2022,"publication_date":"2022-09-10","ids":{"openalex":"https://openalex.org/W4295886447","doi":"https://doi.org/10.1093/bioinformatics/btac597","pmid":"https://pubmed.ncbi.nlm.nih.gov/36094335"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac597","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac597","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/21/4859/46698028/btac597.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/21/4859/46698028/btac597.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100395816","display_name":"Junjie Wang","orcid":"https://orcid.org/0000-0003-0732-051X"},"institutions":[{"id":"https://openalex.org/I83519826","display_name":"Nanjing Medical University","ror":"https://ror.org/059gcgy73","country_code":"CN","type":"education","lineage":["https://openalex.org/I83519826"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junjie Wang","raw_affiliation_strings":["Department of Medical Informatics, School of Biomedical Engineering and Informatics, Nanjing Medical University , Nanjing, Jiangsu, China"],"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics, School of Biomedical Engineering and Informatics, Nanjing Medical University , Nanjing, Jiangsu, China","institution_ids":["https://openalex.org/I83519826"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054394343","display_name":"Jie Hu","orcid":"https://orcid.org/0000-0003-2940-6525"},"institutions":[{"id":"https://openalex.org/I83519826","display_name":"Nanjing Medical University","ror":"https://ror.org/059gcgy73","country_code":"CN","type":"education","lineage":["https://openalex.org/I83519826"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jie Hu","raw_affiliation_strings":["Department of Medical Informatics, School of Biomedical Engineering and Informatics, Nanjing Medical University , Nanjing, Jiangsu, China"],"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics, School of Biomedical Engineering and Informatics, Nanjing Medical University , Nanjing, Jiangsu, China","institution_ids":["https://openalex.org/I83519826"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115806558","display_name":"Huiting Sun","orcid":"https://orcid.org/0000-0001-5018-5769"},"institutions":[{"id":"https://openalex.org/I83519826","display_name":"Nanjing Medical University","ror":"https://ror.org/059gcgy73","country_code":"CN","type":"education","lineage":["https://openalex.org/I83519826"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huiting Sun","raw_affiliation_strings":["Department of Medical Informatics, School of Biomedical Engineering and Informatics, Nanjing Medical University , Nanjing, Jiangsu, China"],"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics, School of Biomedical Engineering and Informatics, Nanjing Medical University , Nanjing, Jiangsu, China","institution_ids":["https://openalex.org/I83519826"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009724929","display_name":"Mengdie Xu","orcid":null},"institutions":[{"id":"https://openalex.org/I83519826","display_name":"Nanjing Medical University","ror":"https://ror.org/059gcgy73","country_code":"CN","type":"education","lineage":["https://openalex.org/I83519826"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"MengDie Xu","raw_affiliation_strings":["Department of Medical Informatics, School of Biomedical Engineering and Informatics, Nanjing Medical University , Nanjing, Jiangsu, China"],"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics, School of Biomedical Engineering and Informatics, Nanjing Medical University , Nanjing, Jiangsu, China","institution_ids":["https://openalex.org/I83519826"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100625882","display_name":"Yun Yu","orcid":"https://orcid.org/0000-0002-8955-4418"},"institutions":[{"id":"https://openalex.org/I83519826","display_name":"Nanjing Medical University","ror":"https://ror.org/059gcgy73","country_code":"CN","type":"education","lineage":["https://openalex.org/I83519826"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yun Yu","raw_affiliation_strings":["Department of Medical Informatics, School of Biomedical Engineering and Informatics, Nanjing Medical University , Nanjing, Jiangsu, China"],"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics, School of Biomedical Engineering and Informatics, Nanjing Medical University , Nanjing, Jiangsu, China","institution_ids":["https://openalex.org/I83519826"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115855481","display_name":"Yun Liu","orcid":"https://orcid.org/0009-0007-0966-6676"},"institutions":[{"id":"https://openalex.org/I83519826","display_name":"Nanjing Medical University","ror":"https://ror.org/059gcgy73","country_code":"CN","type":"education","lineage":["https://openalex.org/I83519826"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yun Liu","raw_affiliation_strings":["Department of Information, The First Affiliated Hospital, Nanjing Medical University , Nanjing, Jiangsu, China","Department of Medical Informatics, School of Biomedical Engineering and Informatics, Nanjing Medical University , Nanjing, Jiangsu, China","Institute of Medical Informatics and Management, Nanjing Medical University , Nanjing, Jiangsu, China"],"affiliations":[{"raw_affiliation_string":"Department of Information, The First Affiliated Hospital, Nanjing Medical University , Nanjing, Jiangsu, China","institution_ids":["https://openalex.org/I83519826"]},{"raw_affiliation_string":"Department of Medical Informatics, School of Biomedical Engineering and Informatics, Nanjing Medical University , Nanjing, Jiangsu, China","institution_ids":["https://openalex.org/I83519826"]},{"raw_affiliation_string":"Institute of Medical Informatics and Management, Nanjing Medical University , Nanjing, Jiangsu, China","institution_ids":["https://openalex.org/I83519826"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052382857","display_name":"Liang Cheng","orcid":"https://orcid.org/0000-0002-6665-6710"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Liang Cheng","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University , Harbin, HeiLongJiang, China","NHC and CAMS Key Laboratory of Molecular Probe and Targeted Theranostics, Harbin Medical University , Harbin, HeiLongJiang, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University , Harbin, HeiLongJiang, China","institution_ids":["https://openalex.org/I156144747"]},{"raw_affiliation_string":"NHC and CAMS Key Laboratory of Molecular Probe and Targeted Theranostics, Harbin Medical University , Harbin, HeiLongJiang, China","institution_ids":["https://openalex.org/I156144747"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5052382857","https://openalex.org/A5115855481"],"corresponding_institution_ids":["https://openalex.org/I156144747","https://openalex.org/I83519826"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":4.3558,"has_fulltext":false,"cited_by_count":29,"citation_normalized_percentile":{"value":0.95119901,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"38","issue":"21","first_page":"4859","last_page":"4867"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9864000082015991,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.73764568567276},{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.6178900599479675},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.5719534158706665},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5619544386863708},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.5280027389526367},{"id":"https://openalex.org/keywords/encoder","display_name":"Encoder","score":0.5075281858444214},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4593849778175354},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.4139365553855896},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.17748817801475525},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.1590592861175537},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1205633282661438}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.73764568567276},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.6178900599479675},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.5719534158706665},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5619544386863708},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.5280027389526367},{"id":"https://openalex.org/C118505674","wikidata":"https://www.wikidata.org/wiki/Q42586063","display_name":"Encoder","level":2,"score":0.5075281858444214},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4593849778175354},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.4139365553855896},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.17748817801475525},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.1590592861175537},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1205633282661438},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C165801399","wikidata":"https://www.wikidata.org/wiki/Q25428","display_name":"Voltage","level":2,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btac597","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac597","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/21/4859/46698028/btac597.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36094335","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36094335","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac597","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac597","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/21/4859/46698028/btac597.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G8597864016","display_name":null,"funder_award_id":"62102191","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4295886447.pdf","grobid_xml":"https://content.openalex.org/works/W4295886447.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W1993046136","https://openalex.org/W2080447388","https://openalex.org/W2095705004","https://openalex.org/W2109991441","https://openalex.org/W2148512505","https://openalex.org/W2169678694","https://openalex.org/W2558999090","https://openalex.org/W2605952223","https://openalex.org/W2741292700","https://openalex.org/W2785947426","https://openalex.org/W2860192827","https://openalex.org/W2900694120","https://openalex.org/W2951676304","https://openalex.org/W2974531988","https://openalex.org/W3018980093","https://openalex.org/W3019745511","https://openalex.org/W3028589594","https://openalex.org/W3032123378","https://openalex.org/W3098189759","https://openalex.org/W3122618795","https://openalex.org/W3130337649","https://openalex.org/W3136918052","https://openalex.org/W3140655290","https://openalex.org/W3151148247","https://openalex.org/W3158144848","https://openalex.org/W3159276577","https://openalex.org/W3166272013","https://openalex.org/W3177828909","https://openalex.org/W6674330103","https://openalex.org/W6790635438","https://openalex.org/W6796585312"],"related_works":["https://openalex.org/W3129816939","https://openalex.org/W2912862995","https://openalex.org/W2985427592","https://openalex.org/W2101501829","https://openalex.org/W2400569965","https://openalex.org/W2060263731","https://openalex.org/W2003194288","https://openalex.org/W391093122","https://openalex.org/W1521239975","https://openalex.org/W4361305867"],"abstract_inverted_index":{"The":[0],"model":[1],"scripts":[2],"are":[3],"available":[4],"at":[5],"https://github.com/IILab-Resource/MGDTA.git.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":14},{"year":2023,"cited_by_count":4}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
