{"id":"https://openalex.org/W4296779585","doi":"https://doi.org/10.1093/bioinformatics/btac495","title":"Detecting DNA of novel fungal pathogens using ResNets and a curated fungi-hosts data collection","display_name":"Detecting DNA of novel fungal pathogens using ResNets and a curated fungi-hosts data collection","publication_year":2022,"publication_date":"2022-08-24","ids":{"openalex":"https://openalex.org/W4296779585","doi":"https://doi.org/10.1093/bioinformatics/btac495","pmid":"https://pubmed.ncbi.nlm.nih.gov/36124807"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac495","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac495","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/Supplement_2/ii168/49886394/btac495.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/Supplement_2/ii168/49886394/btac495.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039532268","display_name":"Jakub M. Bartoszewicz","orcid":"https://orcid.org/0000-0001-6893-2371"},"institutions":[{"id":"https://openalex.org/I143288331","display_name":"Hasso Plattner Institute","ror":"https://ror.org/058rn5r42","country_code":"DE","type":"facility","lineage":["https://openalex.org/I143288331","https://openalex.org/I176453806"]},{"id":"https://openalex.org/I176453806","display_name":"University of Potsdam","ror":"https://ror.org/03bnmw459","country_code":"DE","type":"education","lineage":["https://openalex.org/I176453806"]},{"id":"https://openalex.org/I75951250","display_name":"Freie Universit\u00e4t Berlin","ror":"https://ror.org/046ak2485","country_code":"DE","type":"education","lineage":["https://openalex.org/I75951250"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Jakub M Bartoszewicz","raw_affiliation_strings":["Department of Mathematics and Computer Science, Free University of Berlin , Berlin 14195, Germany","Hasso Plattner Institute for Digital Engineering, Digital Engineering Faculty, University of Potsdam , Potsdam 14482, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, Free University of Berlin , Berlin 14195, Germany","institution_ids":["https://openalex.org/I75951250"]},{"raw_affiliation_string":"Hasso Plattner Institute for Digital Engineering, Digital Engineering Faculty, University of Potsdam , Potsdam 14482, Germany","institution_ids":["https://openalex.org/I143288331","https://openalex.org/I176453806"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061675187","display_name":"Ferdous Nasri","orcid":"https://orcid.org/0000-0003-2018-4786"},"institutions":[{"id":"https://openalex.org/I143288331","display_name":"Hasso Plattner Institute","ror":"https://ror.org/058rn5r42","country_code":"DE","type":"facility","lineage":["https://openalex.org/I143288331","https://openalex.org/I176453806"]},{"id":"https://openalex.org/I176453806","display_name":"University of Potsdam","ror":"https://ror.org/03bnmw459","country_code":"DE","type":"education","lineage":["https://openalex.org/I176453806"]},{"id":"https://openalex.org/I75951250","display_name":"Freie Universit\u00e4t Berlin","ror":"https://ror.org/046ak2485","country_code":"DE","type":"education","lineage":["https://openalex.org/I75951250"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ferdous Nasri","raw_affiliation_strings":["Department of Mathematics and Computer Science, Free University of Berlin , Berlin 14195, Germany","Hasso Plattner Institute for Digital Engineering, Digital Engineering Faculty, University of Potsdam , Potsdam 14482, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, Free University of Berlin , Berlin 14195, Germany","institution_ids":["https://openalex.org/I75951250"]},{"raw_affiliation_string":"Hasso Plattner Institute for Digital Engineering, Digital Engineering Faculty, University of Potsdam , Potsdam 14482, Germany","institution_ids":["https://openalex.org/I143288331","https://openalex.org/I176453806"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033634402","display_name":"Melania Nowicka","orcid":"https://orcid.org/0000-0002-2403-1042"},"institutions":[{"id":"https://openalex.org/I143288331","display_name":"Hasso Plattner Institute","ror":"https://ror.org/058rn5r42","country_code":"DE","type":"facility","lineage":["https://openalex.org/I143288331","https://openalex.org/I176453806"]},{"id":"https://openalex.org/I176453806","display_name":"University of Potsdam","ror":"https://ror.org/03bnmw459","country_code":"DE","type":"education","lineage":["https://openalex.org/I176453806"]},{"id":"https://openalex.org/I75951250","display_name":"Freie Universit\u00e4t Berlin","ror":"https://ror.org/046ak2485","country_code":"DE","type":"education","lineage":["https://openalex.org/I75951250"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Melania Nowicka","raw_affiliation_strings":["Department of Mathematics and Computer Science, Free University of Berlin , Berlin 14195, Germany","Hasso Plattner Institute for Digital Engineering, Digital Engineering Faculty, University of Potsdam , Potsdam 14482, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, Free University of Berlin , Berlin 14195, Germany","institution_ids":["https://openalex.org/I75951250"]},{"raw_affiliation_string":"Hasso Plattner Institute for Digital Engineering, Digital Engineering Faculty, University of Potsdam , Potsdam 14482, Germany","institution_ids":["https://openalex.org/I143288331","https://openalex.org/I176453806"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005996110","display_name":"Bernhard Y. Renard","orcid":"https://orcid.org/0000-0003-4589-9809"},"institutions":[{"id":"https://openalex.org/I143288331","display_name":"Hasso Plattner Institute","ror":"https://ror.org/058rn5r42","country_code":"DE","type":"facility","lineage":["https://openalex.org/I143288331","https://openalex.org/I176453806"]},{"id":"https://openalex.org/I176453806","display_name":"University of Potsdam","ror":"https://ror.org/03bnmw459","country_code":"DE","type":"education","lineage":["https://openalex.org/I176453806"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Bernhard Y Renard","raw_affiliation_strings":["Hasso Plattner Institute for Digital Engineering, Digital Engineering Faculty, University of Potsdam , Potsdam 14482, Germany"],"affiliations":[{"raw_affiliation_string":"Hasso Plattner Institute for Digital Engineering, Digital Engineering Faculty, University of Potsdam , Potsdam 14482, Germany","institution_ids":["https://openalex.org/I143288331","https://openalex.org/I176453806"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5039532268"],"corresponding_institution_ids":["https://openalex.org/I143288331","https://openalex.org/I176453806","https://openalex.org/I75951250"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.2853,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.765625,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"38","issue":"Supplement_2","first_page":"ii168","last_page":"ii174"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10825","display_name":"Plant Pathogens and Fungal Diseases","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10825","display_name":"Plant Pathogens and Fungal Diseases","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11771","display_name":"Plant Pathogens and Resistance","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12858","display_name":"Plant Disease Resistance and Genetics","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5558456182479858},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4432438611984253},{"id":"https://openalex.org/keywords/microbiology","display_name":"Microbiology","score":0.3995199203491211}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5558456182479858},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4432438611984253},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.3995199203491211}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003625","descriptor_name":"Data Collection","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003625","descriptor_name":"Data Collection","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003625","descriptor_name":"Data Collection","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005658","descriptor_name":"Fungi","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D005658","descriptor_name":"Fungi","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D005658","descriptor_name":"Fungi","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btac495","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac495","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/Supplement_2/ii168/49886394/btac495.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36124807","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36124807","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:kobv.de-opus4-uni-potsdam:65188","is_oa":false,"landing_page_url":"https://publishup.uni-potsdam.de/frontdoor/index/index/docId/65188","pdf_url":null,"source":{"id":"https://openalex.org/S4377196346","display_name":"publish.UP (University of Potsdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I176453806","host_organization_name":"University of Potsdam","host_organization_lineage":["https://openalex.org/I176453806"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"doc-type:conferenceObject"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac495","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac495","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/Supplement_2/ii168/49886394/btac495.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1147967356","display_name":null,"funder_award_id":"031A533A","funder_id":"https://openalex.org/F4320330124","funder_display_name":"German Network for Bioinformatics Infrastructure"},{"id":"https://openalex.org/G1159569226","display_name":null,"funder_award_id":"031A534A","funder_id":"https://openalex.org/F4320330124","funder_display_name":"German Network for Bioinformatics Infrastructure"},{"id":"https://openalex.org/G1254183670","display_name":null,"funder_award_id":"031A538A","funder_id":"https://openalex.org/F4320330124","funder_display_name":"German Network for Bioinformatics Infrastructure"},{"id":"https://openalex.org/G2036337822","display_name":null,"funder_award_id":"031L0208","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G338375665","display_name":null,"funder_award_id":"031A537B, 031A533A, 031A538A, 031A533B, 031A535A, 031A537C, 031A534A, 031A532B","funder_id":"https://openalex.org/F4320330124","funder_display_name":"German Network for Bioinformatics Infrastructure"},{"id":"https://openalex.org/G6303721240","display_name":null,"funder_award_id":"031A535A","funder_id":"https://openalex.org/F4320330124","funder_display_name":"German Network for Bioinformatics Infrastructure"},{"id":"https://openalex.org/G6418569106","display_name":null,"funder_award_id":"031A532B","funder_id":"https://openalex.org/F4320330124","funder_display_name":"German Network for Bioinformatics Infrastructure"},{"id":"https://openalex.org/G6557565170","display_name":null,"funder_award_id":"031A537B","funder_id":"https://openalex.org/F4320330124","funder_display_name":"German Network for Bioinformatics Infrastructure"},{"id":"https://openalex.org/G8377217958","display_name":null,"funder_award_id":"031A533B","funder_id":"https://openalex.org/F4320330124","funder_display_name":"German Network for Bioinformatics Infrastructure"},{"id":"https://openalex.org/G8953674659","display_name":null,"funder_award_id":"031A537C","funder_id":"https://openalex.org/F4320330124","funder_display_name":"German Network for Bioinformatics Infrastructure"}],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320330124","display_name":"German Network for Bioinformatics Infrastructure","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4296779585.pdf","grobid_xml":"https://content.openalex.org/works/W4296779585.grobid-xml"},"referenced_works_count":72,"referenced_works":["https://openalex.org/W1510787670","https://openalex.org/W1987095367","https://openalex.org/W2015579345","https://openalex.org/W2055043387","https://openalex.org/W2056926089","https://openalex.org/W2062559816","https://openalex.org/W2068351996","https://openalex.org/W2090676009","https://openalex.org/W2106533426","https://openalex.org/W2107794472","https://openalex.org/W2118751052","https://openalex.org/W2122427889","https://openalex.org/W2137595228","https://openalex.org/W2137662380","https://openalex.org/W2142678478","https://openalex.org/W2143280034","https://openalex.org/W2170551349","https://openalex.org/W2238100083","https://openalex.org/W2256987348","https://openalex.org/W2342687991","https://openalex.org/W2484946833","https://openalex.org/W2536287248","https://openalex.org/W2570535773","https://openalex.org/W2595907366","https://openalex.org/W2605801152","https://openalex.org/W2606594686","https://openalex.org/W2758005814","https://openalex.org/W2761430568","https://openalex.org/W2769754674","https://openalex.org/W2789843538","https://openalex.org/W2790546589","https://openalex.org/W2791830661","https://openalex.org/W2803336135","https://openalex.org/W2883704881","https://openalex.org/W2891521255","https://openalex.org/W2895669906","https://openalex.org/W2899818496","https://openalex.org/W2919326595","https://openalex.org/W2924886534","https://openalex.org/W2935777223","https://openalex.org/W2939196874","https://openalex.org/W2941591629","https://openalex.org/W2950964375","https://openalex.org/W2951027231","https://openalex.org/W2955832691","https://openalex.org/W2961729414","https://openalex.org/W2963887836","https://openalex.org/W2965629790","https://openalex.org/W2968450569","https://openalex.org/W2990618091","https://openalex.org/W3043424179","https://openalex.org/W3048090444","https://openalex.org/W3048846953","https://openalex.org/W3049641875","https://openalex.org/W3082161503","https://openalex.org/W3126195647","https://openalex.org/W3128792544","https://openalex.org/W3129779261","https://openalex.org/W3155024268","https://openalex.org/W3171564659","https://openalex.org/W3184635404","https://openalex.org/W3193844559","https://openalex.org/W3199437591","https://openalex.org/W3203639727","https://openalex.org/W4205954540","https://openalex.org/W4211042503","https://openalex.org/W4235450272","https://openalex.org/W4242318543","https://openalex.org/W4245572222","https://openalex.org/W4247001379","https://openalex.org/W4247053599","https://openalex.org/W6749205173"],"related_works":["https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W2117258802","https://openalex.org/W4234157524"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":3}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
