{"id":"https://openalex.org/W4224301856","doi":"https://doi.org/10.1093/bioinformatics/btac213","title":"BFF and cellhashR: analysis tools for accurate demultiplexing of cell hashing data","display_name":"BFF and cellhashR: analysis tools for accurate demultiplexing of cell hashing data","publication_year":2022,"publication_date":"2022-04-08","ids":{"openalex":"https://openalex.org/W4224301856","doi":"https://doi.org/10.1093/bioinformatics/btac213","pmid":"https://pubmed.ncbi.nlm.nih.gov/35561167"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac213","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac213","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9113275","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081445218","display_name":"Gregory Boggy","orcid":"https://orcid.org/0000-0002-8283-5620"},"institutions":[{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]},{"id":"https://openalex.org/I102507086","display_name":"Oregon National Primate Research Center","ror":"https://ror.org/05fcfqq67","country_code":"US","type":"facility","lineage":["https://openalex.org/I102507086"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gregory J Boggy","raw_affiliation_strings":["Oregon National Primate Research Center, Oregon Health and Science University , Beaverton, OR 97006, USA"],"affiliations":[{"raw_affiliation_string":"Oregon National Primate Research Center, Oregon Health and Science University , Beaverton, OR 97006, USA","institution_ids":["https://openalex.org/I102507086","https://openalex.org/I165690674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050681101","display_name":"GW McElfresh","orcid":null},"institutions":[{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]},{"id":"https://openalex.org/I102507086","display_name":"Oregon National Primate Research Center","ror":"https://ror.org/05fcfqq67","country_code":"US","type":"facility","lineage":["https://openalex.org/I102507086"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"G W McElfresh","raw_affiliation_strings":["Oregon National Primate Research Center, Oregon Health and Science University , Beaverton, OR 97006, USA"],"affiliations":[{"raw_affiliation_string":"Oregon National Primate Research Center, Oregon Health and Science University , Beaverton, OR 97006, USA","institution_ids":["https://openalex.org/I102507086","https://openalex.org/I165690674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083589688","display_name":"Eisa Mahyari","orcid":"https://orcid.org/0000-0002-5613-3131"},"institutions":[{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]},{"id":"https://openalex.org/I102507086","display_name":"Oregon National Primate Research Center","ror":"https://ror.org/05fcfqq67","country_code":"US","type":"facility","lineage":["https://openalex.org/I102507086"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eisa Mahyari","raw_affiliation_strings":["Oregon National Primate Research Center, Oregon Health and Science University , Beaverton, OR 97006, USA"],"affiliations":[{"raw_affiliation_string":"Oregon National Primate Research Center, Oregon Health and Science University , Beaverton, OR 97006, USA","institution_ids":["https://openalex.org/I102507086","https://openalex.org/I165690674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068086426","display_name":"Abigail B. Ventura","orcid":"https://orcid.org/0000-0002-8893-4769"},"institutions":[{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]},{"id":"https://openalex.org/I4210137443","display_name":"Children's Cancer Therapy Development Institute","ror":"https://ror.org/04netx779","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210137443"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Abigail B Ventura","raw_affiliation_strings":["Vaccine and Gene Therapy Institute, Oregon Health and Science University , Beaverton, OR 97006, USA"],"affiliations":[{"raw_affiliation_string":"Vaccine and Gene Therapy Institute, Oregon Health and Science University , Beaverton, OR 97006, USA","institution_ids":["https://openalex.org/I4210137443","https://openalex.org/I165690674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059051358","display_name":"Scott G. Hansen","orcid":"https://orcid.org/0000-0002-9845-6481"},"institutions":[{"id":"https://openalex.org/I4210137443","display_name":"Children's Cancer Therapy Development Institute","ror":"https://ror.org/04netx779","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210137443"]},{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Scott G Hansen","raw_affiliation_strings":["Vaccine and Gene Therapy Institute, Oregon Health and Science University , Beaverton, OR 97006, USA"],"affiliations":[{"raw_affiliation_string":"Vaccine and Gene Therapy Institute, Oregon Health and Science University , Beaverton, OR 97006, USA","institution_ids":["https://openalex.org/I4210137443","https://openalex.org/I165690674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088595140","display_name":"Louis J. Picker","orcid":"https://orcid.org/0000-0003-0546-398X"},"institutions":[{"id":"https://openalex.org/I4210137443","display_name":"Children's Cancer Therapy Development Institute","ror":"https://ror.org/04netx779","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210137443"]},{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Louis J Picker","raw_affiliation_strings":["Vaccine and Gene Therapy Institute, Oregon Health and Science University , Beaverton, OR 97006, USA"],"affiliations":[{"raw_affiliation_string":"Vaccine and Gene Therapy Institute, Oregon Health and Science University , Beaverton, OR 97006, USA","institution_ids":["https://openalex.org/I4210137443","https://openalex.org/I165690674"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5074269474","display_name":"Benjamin N. Bimber","orcid":"https://orcid.org/0000-0001-8092-3080"},"institutions":[{"id":"https://openalex.org/I102507086","display_name":"Oregon National Primate Research Center","ror":"https://ror.org/05fcfqq67","country_code":"US","type":"facility","lineage":["https://openalex.org/I102507086"]},{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Benjamin N Bimber","raw_affiliation_strings":["Oregon National Primate Research Center, Oregon Health and Science University , Beaverton, OR 97006, USA"],"affiliations":[{"raw_affiliation_string":"Oregon National Primate Research Center, Oregon Health and Science University , Beaverton, OR 97006, USA","institution_ids":["https://openalex.org/I102507086","https://openalex.org/I165690674"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5074269474"],"corresponding_institution_ids":["https://openalex.org/I102507086","https://openalex.org/I165690674"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":3.4312,"has_fulltext":false,"cited_by_count":39,"citation_normalized_percentile":{"value":0.9386433,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"38","issue":"10","first_page":"2791","last_page":"2801"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9031999707221985,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/multiplexing","display_name":"Multiplexing","score":0.8290300965309143},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.717367947101593},{"id":"https://openalex.org/keywords/barcode","display_name":"Barcode","score":0.7018176317214966},{"id":"https://openalex.org/keywords/hash-function","display_name":"Hash function","score":0.6085847616195679},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5680692791938782},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33130520582199097},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08106359839439392}],"concepts":[{"id":"https://openalex.org/C19275194","wikidata":"https://www.wikidata.org/wiki/Q222903","display_name":"Multiplexing","level":2,"score":0.8290300965309143},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.717367947101593},{"id":"https://openalex.org/C2776841711","wikidata":"https://www.wikidata.org/wiki/Q856","display_name":"Barcode","level":2,"score":0.7018176317214966},{"id":"https://openalex.org/C99138194","wikidata":"https://www.wikidata.org/wiki/Q183427","display_name":"Hash function","level":2,"score":0.6085847616195679},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5680692791938782},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33130520582199097},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08106359839439392},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btac213","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac213","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35561167","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35561167","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9113275","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9113275","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:9113275","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9113275","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"Text"},"sustainable_development_goals":[{"score":0.4099999964237213,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G1642599615","display_name":null,"funder_award_id":"P51 OD011092","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2879318545","display_name":null,"funder_award_id":"5UM1 AI124377-05","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4504527904","display_name":null,"funder_award_id":"OPP1108533/INV-008046","funder_id":"https://openalex.org/F4320306137","funder_display_name":"Bill and Melinda Gates Foundation"},{"id":"https://openalex.org/G8807835820","display_name":null,"funder_award_id":"AI128741-05","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306137","display_name":"Bill and Melinda Gates Foundation","ror":"https://ror.org/0456r8d26"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":35,"referenced_works":["https://openalex.org/W1602702667","https://openalex.org/W2102212449","https://openalex.org/W2135937351","https://openalex.org/W2286142055","https://openalex.org/W2490472517","https://openalex.org/W2502203653","https://openalex.org/W2524376318","https://openalex.org/W2572375651","https://openalex.org/W2739492614","https://openalex.org/W2752426001","https://openalex.org/W2753908609","https://openalex.org/W2785085486","https://openalex.org/W2794480084","https://openalex.org/W2858752521","https://openalex.org/W2889236955","https://openalex.org/W2933118229","https://openalex.org/W2940256315","https://openalex.org/W2949635314","https://openalex.org/W2949735123","https://openalex.org/W2951068818","https://openalex.org/W2951506174","https://openalex.org/W2951890476","https://openalex.org/W2953584518","https://openalex.org/W2958475422","https://openalex.org/W2965985232","https://openalex.org/W2968503855","https://openalex.org/W2972480532","https://openalex.org/W2988464219","https://openalex.org/W2997393200","https://openalex.org/W2999284763","https://openalex.org/W3046099861","https://openalex.org/W3088712245","https://openalex.org/W3152371839","https://openalex.org/W3155656876","https://openalex.org/W3157091350"],"related_works":["https://openalex.org/W2256570403","https://openalex.org/W2074156223","https://openalex.org/W4391927655","https://openalex.org/W2103246366","https://openalex.org/W2901653204","https://openalex.org/W2102526470","https://openalex.org/W2613659923","https://openalex.org/W4378447789","https://openalex.org/W3207557903","https://openalex.org/W1980504858"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":13},{"year":2024,"cited_by_count":17},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}