{"id":"https://openalex.org/W4225820494","doi":"https://doi.org/10.1093/bioinformatics/btac198","title":"tRNAstudio: facilitating the study of human mature tRNAs from deep sequencing datasets","display_name":"tRNAstudio: facilitating the study of human mature tRNAs from deep sequencing datasets","publication_year":2022,"publication_date":"2022-04-07","ids":{"openalex":"https://openalex.org/W4225820494","doi":"https://doi.org/10.1093/bioinformatics/btac198","pmid":"https://pubmed.ncbi.nlm.nih.gov/35561195"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac198","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac198","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017332447","display_name":"Marina Murillo-Recio","orcid":null},"institutions":[{"id":"https://openalex.org/I4210122345","display_name":"Institute for Research in Biomedicine","ror":"https://ror.org/01z1gye03","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210122345","https://openalex.org/I4210132884","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Marina Murillo-Recio","raw_affiliation_strings":["Institute for Research in Biomedicine, The Barcelona Institute of Science and Technology , Barcelona, Catalonia 08028, Spain"],"affiliations":[{"raw_affiliation_string":"Institute for Research in Biomedicine, The Barcelona Institute of Science and Technology , Barcelona, Catalonia 08028, Spain","institution_ids":["https://openalex.org/I4210122345"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089917796","display_name":"Ignacio Miguel Mart\u00ednez de Lejarza Samper","orcid":null},"institutions":[{"id":"https://openalex.org/I4210122345","display_name":"Institute for Research in Biomedicine","ror":"https://ror.org/01z1gye03","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210122345","https://openalex.org/I4210132884","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Ignacio Miguel Mart\u00ednez de Lejarza Samper","raw_affiliation_strings":["Institute for Research in Biomedicine, The Barcelona Institute of Science and Technology , Barcelona, Catalonia 08028, Spain"],"affiliations":[{"raw_affiliation_string":"Institute for Research in Biomedicine, The Barcelona Institute of Science and Technology , Barcelona, Catalonia 08028, Spain","institution_ids":["https://openalex.org/I4210122345"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051700894","display_name":"Cristina Tu\u00f1\u00ed i Dom\u00ednguez","orcid":"https://orcid.org/0000-0001-5762-2108"},"institutions":[{"id":"https://openalex.org/I4210122345","display_name":"Institute for Research in Biomedicine","ror":"https://ror.org/01z1gye03","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210122345","https://openalex.org/I4210132884","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Cristina Tu\u00f1\u00ed i Dom\u00ednguez","raw_affiliation_strings":["Institute for Research in Biomedicine, The Barcelona Institute of Science and Technology , Barcelona, Catalonia 08028, Spain"],"affiliations":[{"raw_affiliation_string":"Institute for Research in Biomedicine, The Barcelona Institute of Science and Technology , Barcelona, Catalonia 08028, Spain","institution_ids":["https://openalex.org/I4210122345"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054899545","display_name":"Llu\u0131\u0301s Ribas de Pouplana","orcid":"https://orcid.org/0000-0002-2087-0359"},"institutions":[{"id":"https://openalex.org/I4210122345","display_name":"Institute for Research in Biomedicine","ror":"https://ror.org/01z1gye03","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210122345","https://openalex.org/I4210132884","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I11932220","display_name":"Instituci\u00f3 Catalana de Recerca i Estudis Avan\u00e7ats","ror":"https://ror.org/0371hy230","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I11932220"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Llu\u00eds Ribas de Pouplana","raw_affiliation_strings":["Catalan Institution for Research and Advanced Studies , Barcelona, Catalonia 08010, Spain","Institute for Research in Biomedicine, The Barcelona Institute of Science and Technology , Barcelona, Catalonia 08028, Spain"],"affiliations":[{"raw_affiliation_string":"Catalan Institution for Research and Advanced Studies , Barcelona, Catalonia 08010, Spain","institution_ids":["https://openalex.org/I11932220"]},{"raw_affiliation_string":"Institute for Research in Biomedicine, The Barcelona Institute of Science and Technology , Barcelona, Catalonia 08028, Spain","institution_ids":["https://openalex.org/I4210122345"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073653946","display_name":"Adri\u00e1n Gabriel Torres","orcid":"https://orcid.org/0000-0002-5479-1325"},"institutions":[{"id":"https://openalex.org/I4210122345","display_name":"Institute for Research in Biomedicine","ror":"https://ror.org/01z1gye03","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210122345","https://openalex.org/I4210132884","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Adrian Gabriel Torres","raw_affiliation_strings":["Institute for Research in Biomedicine, The Barcelona Institute of Science and Technology , Barcelona, Catalonia 08028, Spain"],"affiliations":[{"raw_affiliation_string":"Institute for Research in Biomedicine, The Barcelona Institute of Science and Technology , Barcelona, Catalonia 08028, Spain","institution_ids":["https://openalex.org/I4210122345"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5054899545","https://openalex.org/A5073653946"],"corresponding_institution_ids":["https://openalex.org/I11932220","https://openalex.org/I4210122345"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.1716,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.46316694,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":"38","issue":"10","first_page":"2934","last_page":"2936"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9897000193595886,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transfer-rna","display_name":"Transfer RNA","score":0.7798565626144409},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7484212517738342},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.592064619064331},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5343842506408691},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.45104220509529114},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.42958056926727295},{"id":"https://openalex.org/keywords/license","display_name":"License","score":0.3823096752166748},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3376832902431488},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24742195010185242},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.2288018763065338},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.21598151326179504},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.18274405598640442},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14979583024978638},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.08749192953109741}],"concepts":[{"id":"https://openalex.org/C153957851","wikidata":"https://www.wikidata.org/wiki/Q201448","display_name":"Transfer RNA","level":4,"score":0.7798565626144409},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7484212517738342},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.592064619064331},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5343842506408691},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.45104220509529114},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.42958056926727295},{"id":"https://openalex.org/C2780560020","wikidata":"https://www.wikidata.org/wiki/Q79719","display_name":"License","level":2,"score":0.3823096752166748},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3376832902431488},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24742195010185242},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.2288018763065338},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.21598151326179504},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.18274405598640442},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14979583024978638},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.08749192953109741},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012323","descriptor_name":"RNA Processing, Post-Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012323","descriptor_name":"RNA Processing, Post-Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012323","descriptor_name":"RNA Processing, Post-Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012343","descriptor_name":"RNA, Transfer","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012343","descriptor_name":"RNA, Transfer","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012343","descriptor_name":"RNA, Transfer","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btac198","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac198","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35561195","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35561195","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.6700000166893005,"display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G6081648081","display_name":null,"funder_award_id":"2021 FI_B 01053","funder_id":"https://openalex.org/F4320334830","funder_display_name":"Ag\u00e8ncia de Gesti\u00f3 d'Ajuts Universitaris i de Recerca"}],"funders":[{"id":"https://openalex.org/F4320334830","display_name":"Ag\u00e8ncia de Gesti\u00f3 d'Ajuts Universitaris i de Recerca","ror":"https://ror.org/01n4pqe45"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W1973290333","https://openalex.org/W2042120426","https://openalex.org/W2072926131","https://openalex.org/W2108138064","https://openalex.org/W2114147818","https://openalex.org/W2179438025","https://openalex.org/W2341142076","https://openalex.org/W2572271818","https://openalex.org/W2771386545","https://openalex.org/W2912327568","https://openalex.org/W2939643004","https://openalex.org/W3081087990","https://openalex.org/W3130039809","https://openalex.org/W3153491424","https://openalex.org/W6732221282"],"related_works":["https://openalex.org/W2036021480","https://openalex.org/W2230691193","https://openalex.org/W2546377002","https://openalex.org/W4248389398","https://openalex.org/W2798740241","https://openalex.org/W4285209474","https://openalex.org/W2247596074","https://openalex.org/W2786051832","https://openalex.org/W4297124805","https://openalex.org/W4225820494"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
