{"id":"https://openalex.org/W3215682729","doi":"https://doi.org/10.1093/bioinformatics/btac166","title":"Analysing high-throughput sequencing data in Python with HTSeq 2.0","display_name":"Analysing high-throughput sequencing data in Python with HTSeq 2.0","publication_year":2022,"publication_date":"2022-03-18","ids":{"openalex":"https://openalex.org/W3215682729","doi":"https://doi.org/10.1093/bioinformatics/btac166","mag":"3215682729","pmid":"https://pubmed.ncbi.nlm.nih.gov/35561197"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac166","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac166","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/10/2943/43705068/btac166.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"preprint","indexed_in":["arxiv","crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/10/2943/43705068/btac166.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011549686","display_name":"Givanna Putri","orcid":"https://orcid.org/0000-0002-7399-8014"},"institutions":[{"id":"https://openalex.org/I2801862688","display_name":"Cancer Institute of New South Wales","ror":"https://ror.org/029a54f25","country_code":"AU","type":"other","lineage":["https://openalex.org/I1311436738","https://openalex.org/I2801351115","https://openalex.org/I2801862688"]},{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Givanna H Putri","raw_affiliation_strings":["Adult Cancer Program, Lowy Cancer Research Centre, University of New South Wales , Sydney, NSW 2033, Australia","School of Clinical Medicine, University of New South Wales , Sydney, NSW 2033, Australia"],"affiliations":[{"raw_affiliation_string":"Adult Cancer Program, Lowy Cancer Research Centre, University of New South Wales , Sydney, NSW 2033, Australia","institution_ids":["https://openalex.org/I2801862688","https://openalex.org/I31746571"]},{"raw_affiliation_string":"School of Clinical Medicine, University of New South Wales , Sydney, NSW 2033, Australia","institution_ids":["https://openalex.org/I31746571"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022280742","display_name":"Simon Anders","orcid":"https://orcid.org/0000-0003-4868-1805"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Simon Anders","raw_affiliation_strings":["Bioquant Center, University of Heidelberg , 69120 Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"Bioquant Center, University of Heidelberg , 69120 Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014255302","display_name":"Paul Theodor Pyl","orcid":"https://orcid.org/0000-0002-7651-883X"},"institutions":[{"id":"https://openalex.org/I187531555","display_name":"Lund University","ror":"https://ror.org/012a77v79","country_code":"SE","type":"education","lineage":["https://openalex.org/I187531555"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Paul Theodor Pyl","raw_affiliation_strings":["Division of Surgery, Oncology and Pathology, Department of Clinical Sciences Lund, Faculty of Medicine, Lund University , Lund, Sweden"],"affiliations":[{"raw_affiliation_string":"Division of Surgery, Oncology and Pathology, Department of Clinical Sciences Lund, Faculty of Medicine, Lund University , Lund, Sweden","institution_ids":["https://openalex.org/I187531555"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054479773","display_name":"John E. Pimanda","orcid":"https://orcid.org/0000-0002-0509-8962"},"institutions":[{"id":"https://openalex.org/I2801862688","display_name":"Cancer Institute of New South Wales","ror":"https://ror.org/029a54f25","country_code":"AU","type":"other","lineage":["https://openalex.org/I1311436738","https://openalex.org/I2801351115","https://openalex.org/I2801862688"]},{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]},{"id":"https://openalex.org/I4210108821","display_name":"Prince of Wales Hospital","ror":"https://ror.org/022arq532","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I4210108821"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"John E Pimanda","raw_affiliation_strings":["Adult Cancer Program, Lowy Cancer Research Centre, University of New South Wales , Sydney, NSW 2033, Australia","Department of Haematology, The Prince of Wales Hospital , Sydney, NSW 2031, Australia","Department of Pathology, School of Medical Sciences, University of New South Wales , Sydney, NSW 2052, Australia","School of Clinical Medicine, University of New South Wales , Sydney, NSW 2033, Australia"],"affiliations":[{"raw_affiliation_string":"Adult Cancer Program, Lowy Cancer Research Centre, University of New South Wales , Sydney, NSW 2033, Australia","institution_ids":["https://openalex.org/I2801862688","https://openalex.org/I31746571"]},{"raw_affiliation_string":"Department of Haematology, The Prince of Wales Hospital , Sydney, NSW 2031, Australia","institution_ids":["https://openalex.org/I4210108821"]},{"raw_affiliation_string":"Department of Pathology, School of Medical Sciences, University of New South Wales , Sydney, NSW 2052, Australia","institution_ids":["https://openalex.org/I31746571"]},{"raw_affiliation_string":"School of Clinical Medicine, University of New South Wales , Sydney, NSW 2033, Australia","institution_ids":["https://openalex.org/I31746571"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085566500","display_name":"Fabio Zanini","orcid":"https://orcid.org/0000-0001-7097-8539"},"institutions":[{"id":"https://openalex.org/I2801862688","display_name":"Cancer Institute of New South Wales","ror":"https://ror.org/029a54f25","country_code":"AU","type":"other","lineage":["https://openalex.org/I1311436738","https://openalex.org/I2801351115","https://openalex.org/I2801862688"]},{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Fabio Zanini","raw_affiliation_strings":["Adult Cancer Program, Lowy Cancer Research Centre, University of New South Wales , Sydney, NSW 2033, Australia","Cellular Genomics Futures Institute, University of New South Wales , Sydney, NSW 2033, Australia","School of Clinical Medicine, University of New South Wales , Sydney, NSW 2033, Australia","University of New South Wales,#TAB#"],"affiliations":[{"raw_affiliation_string":"Adult Cancer Program, Lowy Cancer Research Centre, University of New South Wales , Sydney, NSW 2033, Australia","institution_ids":["https://openalex.org/I2801862688","https://openalex.org/I31746571"]},{"raw_affiliation_string":"Cellular Genomics Futures Institute, University of New South Wales , Sydney, NSW 2033, Australia","institution_ids":["https://openalex.org/I31746571"]},{"raw_affiliation_string":"School of Clinical Medicine, University of New South Wales , Sydney, NSW 2033, Australia","institution_ids":["https://openalex.org/I31746571"]},{"raw_affiliation_string":"University of New South Wales,#TAB#","institution_ids":["https://openalex.org/I31746571"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5085566500"],"corresponding_institution_ids":["https://openalex.org/I2801862688","https://openalex.org/I31746571"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.5624,"has_fulltext":false,"cited_by_count":18,"citation_normalized_percentile":{"value":0.82325497,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"38","issue":"10","first_page":"2943","last_page":"2945"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9890000224113464,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9771999716758728,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.9557653665542603},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7738720178604126},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.6018255352973938},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.593307375907898},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.5814242362976074},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.49810147285461426},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.477693110704422},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.47741520404815674}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.9557653665542603},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7738720178604126},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.6018255352973938},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.593307375907898},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.5814242362976074},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.49810147285461426},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.477693110704422},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.47741520404815674}],"mesh":[{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008004","descriptor_name":"Licensure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008004","descriptor_name":"Licensure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008004","descriptor_name":"Licensure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1093/bioinformatics/btac166","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac166","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/10/2943/43705068/btac166.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35561197","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35561197","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:arXiv.org:2112.00939","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2112.00939","pdf_url":"https://arxiv.org/pdf/2112.00939","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"mag:3215682729","is_oa":true,"landing_page_url":"http://arxiv.org/pdf/2112.00939.pdf","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"arXiv (Cornell University)","raw_type":null},{"id":"pmh:oai:lup.lub.lu.se:248ec706-a863-4570-afcd-0d7cbb5bf686","is_oa":false,"landing_page_url":"https://lup.lub.lu.se/record/248ec706-a863-4570-afcd-0d7cbb5bf686","pdf_url":null,"source":{"id":"https://openalex.org/S4306400536","display_name":"Lund University Publications (Lund University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I187531555","host_organization_name":"Lund University","host_organization_lineage":["https://openalex.org/I187531555"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1367-4803","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:9113351","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9113351","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"doi:10.48550/arxiv.2112.00939","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2112.00939","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac166","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac166","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/10/2943/43705068/btac166.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.46000000834465027,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320334705","display_name":"National Health and Medical Research Council","ror":"https://ror.org/011kf5r70"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3215682729.pdf","grobid_xml":"https://content.openalex.org/works/W3215682729.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W1987427622","https://openalex.org/W2019552331","https://openalex.org/W2104266030","https://openalex.org/W2134526812","https://openalex.org/W2763354058","https://openalex.org/W2800392236","https://openalex.org/W3003257820","https://openalex.org/W3035965352","https://openalex.org/W3099878876","https://openalex.org/W3103145119","https://openalex.org/W3131443014"],"related_works":[],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":6}],"updated_date":"2026-04-09T08:11:56.329763","created_date":"2025-10-10T00:00:00"}
