{"id":"https://openalex.org/W4212844381","doi":"https://doi.org/10.1093/bioinformatics/btac122","title":"SEPA: signaling entropy-based algorithm to evaluate personalized pathway activation for survival analysis on pan-cancer data","display_name":"SEPA: signaling entropy-based algorithm to evaluate personalized pathway activation for survival analysis on pan-cancer data","publication_year":2022,"publication_date":"2022-02-21","ids":{"openalex":"https://openalex.org/W4212844381","doi":"https://doi.org/10.1093/bioinformatics/btac122","pmid":"https://pubmed.ncbi.nlm.nih.gov/35199150"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac122","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac122","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100687807","display_name":"Xingyi Li","orcid":"https://orcid.org/0000-0002-6004-4174"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xingyi Li","raw_affiliation_strings":["School of Computer Science, Northwestern Polytechnical University , Xi\u2019an, Shaanxi 710072, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University , Xi\u2019an, Shaanxi 710072, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100719013","display_name":"Min Li","orcid":"https://orcid.org/0000-0002-0188-1394"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Min Li","raw_affiliation_strings":["School of Computer Science, Central South University , Changsha, Hunan 410083, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Central South University , Changsha, Hunan 410083, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046328933","display_name":"Ju Xiang","orcid":"https://orcid.org/0000-0002-3045-5706"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I165911609","display_name":"Changsha Medical University","ror":"https://ror.org/05dt7z971","country_code":"CN","type":"education","lineage":["https://openalex.org/I165911609"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ju Xiang","raw_affiliation_strings":["Neuroscience Research Center & Department of Basic Medical Sciences, Changsha Medical University , Changsha, Hunan 410219, China","School of Computer Science, Central South University , Changsha, Hunan 410083, China"],"affiliations":[{"raw_affiliation_string":"Neuroscience Research Center & Department of Basic Medical Sciences, Changsha Medical University , Changsha, Hunan 410219, China","institution_ids":["https://openalex.org/I165911609"]},{"raw_affiliation_string":"School of Computer Science, Central South University , Changsha, Hunan 410083, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028877201","display_name":"Zhelin Zhao","orcid":null},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhelin Zhao","raw_affiliation_strings":["School of Software, Northwestern Polytechnical University , Xi\u2019an, Shaanxi 710072, China"],"affiliations":[{"raw_affiliation_string":"School of Software, Northwestern Polytechnical University , Xi\u2019an, Shaanxi 710072, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009944817","display_name":"Xuequn Shang","orcid":"https://orcid.org/0000-0002-7249-8210"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xuequn Shang","raw_affiliation_strings":["School of Computer Science, Northwestern Polytechnical University , Xi\u2019an, Shaanxi 710072, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University , Xi\u2019an, Shaanxi 710072, China","institution_ids":["https://openalex.org/I17145004"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5009944817","https://openalex.org/A5100719013"],"corresponding_institution_ids":["https://openalex.org/I139660479","https://openalex.org/I17145004"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.6492,"has_fulltext":false,"cited_by_count":39,"citation_normalized_percentile":{"value":0.83452113,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"38","issue":"9","first_page":"2536","last_page":"2543"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.898965060710907},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.540088951587677},{"id":"https://openalex.org/keywords/discriminative-model","display_name":"Discriminative model","score":0.537127673625946},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4967072606086731},{"id":"https://openalex.org/keywords/personalized-medicine","display_name":"Personalized medicine","score":0.46310871839523315},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.4217374324798584},{"id":"https://openalex.org/keywords/entropy","display_name":"Entropy (arrow of time)","score":0.411003053188324},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.39532017707824707},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3731541335582733},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3433075547218323},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.33898621797561646},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24448224902153015}],"concepts":[{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.898965060710907},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.540088951587677},{"id":"https://openalex.org/C97931131","wikidata":"https://www.wikidata.org/wiki/Q5282087","display_name":"Discriminative model","level":2,"score":0.537127673625946},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4967072606086731},{"id":"https://openalex.org/C32220436","wikidata":"https://www.wikidata.org/wiki/Q2072214","display_name":"Personalized medicine","level":2,"score":0.46310871839523315},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.4217374324798584},{"id":"https://openalex.org/C106301342","wikidata":"https://www.wikidata.org/wiki/Q4117933","display_name":"Entropy (arrow of time)","level":2,"score":0.411003053188324},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.39532017707824707},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3731541335582733},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3433075547218323},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.33898621797561646},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24448224902153015},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016019","descriptor_name":"Survival Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016019","descriptor_name":"Survival Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016019","descriptor_name":"Survival Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019277","descriptor_name":"Entropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019277","descriptor_name":"Entropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019277","descriptor_name":"Entropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btac122","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac122","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35199150","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35199150","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/10","score":0.6299999952316284,"display_name":"Reduced inequalities"}],"awards":[{"id":"https://openalex.org/G5006237592","display_name":null,"funder_award_id":"U19A2064","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8693918016","display_name":null,"funder_award_id":"kq2009093","funder_id":"https://openalex.org/F4320336634","funder_display_name":"Training Program for Excellent Young Innovators of Changsha"},{"id":"https://openalex.org/G8881024869","display_name":null,"funder_award_id":"61772426","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320336634","display_name":"Training Program for Excellent Young Innovators of Changsha","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":51,"referenced_works":["https://openalex.org/W1826975184","https://openalex.org/W1977868384","https://openalex.org/W1990055914","https://openalex.org/W1992045522","https://openalex.org/W1996386813","https://openalex.org/W2006778392","https://openalex.org/W2011417152","https://openalex.org/W2033360354","https://openalex.org/W2049362398","https://openalex.org/W2050574264","https://openalex.org/W2051923123","https://openalex.org/W2058451329","https://openalex.org/W2059313996","https://openalex.org/W2071624651","https://openalex.org/W2088891952","https://openalex.org/W2096781310","https://openalex.org/W2100625056","https://openalex.org/W2119284420","https://openalex.org/W2123879591","https://openalex.org/W2140416663","https://openalex.org/W2158384363","https://openalex.org/W2159707944","https://openalex.org/W2160450758","https://openalex.org/W2161466790","https://openalex.org/W2165867280","https://openalex.org/W2167638767","https://openalex.org/W2186483613","https://openalex.org/W2208550830","https://openalex.org/W2429291696","https://openalex.org/W2489759979","https://openalex.org/W2620676965","https://openalex.org/W2765885372","https://openalex.org/W2775217148","https://openalex.org/W2803000543","https://openalex.org/W2899821983","https://openalex.org/W2910682475","https://openalex.org/W2912198494","https://openalex.org/W2950222828","https://openalex.org/W3004474617","https://openalex.org/W3037835453","https://openalex.org/W3095769488","https://openalex.org/W3154646048","https://openalex.org/W3161968936","https://openalex.org/W3184925852","https://openalex.org/W3196757689","https://openalex.org/W4210949798","https://openalex.org/W4294216483","https://openalex.org/W6686654053","https://openalex.org/W6749486397","https://openalex.org/W6751502750","https://openalex.org/W6759243761"],"related_works":["https://openalex.org/W2952757432","https://openalex.org/W2541920494","https://openalex.org/W4229079080","https://openalex.org/W4206534706","https://openalex.org/W4280605930","https://openalex.org/W3006943036","https://openalex.org/W3090617741","https://openalex.org/W4200511449","https://openalex.org/W4299487748","https://openalex.org/W2974888070"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":20},{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":3}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
